Contacts of the helix formed by residues 315 - 349 (chain G) in PDB entry 5UQ9
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 315 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312G PHE* 4.4 0.8 - - - -
314G GLY* 1.3 73.1 - - - -
316G LYS* 1.3 64.7 + - - +
317G LYS* 4.2 11.5 - - + +
318G SER* 2.4 37.0 + - - -
319G PHE* 3.3 17.0 + - - +
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Residues in contact with LYS 316 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
209G LEU* 3.4 58.7 + - + +
210G GLY 5.3 0.6 - - - -
211G MET* 4.1 3.7 - - - +
215G GLU* 3.1 32.7 + - - -
312G PHE* 4.3 7.6 - - + -
314G GLY 3.5 2.4 + - - +
315G ASP* 1.3 72.7 - - - +
317G LYS* 1.3 56.0 + - - +
319G PHE 4.5 0.2 - - - +
320G LEU* 2.6 40.7 + - + +
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Residues in contact with LYS 317 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315G ASP* 3.2 9.2 - - + +
316G LYS* 1.3 77.8 - - - +
318G SER* 1.3 86.7 + - - +
320G LEU* 4.3 6.0 - - - +
321G GLU* 3.4 23.9 + - + +
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Residues in contact with SER 318 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315G ASP* 2.4 35.2 + - - -
316G LYS 3.2 0.2 - - - -
317G LYS* 1.3 94.3 + - - +
319G PHE* 1.3 60.5 + - - +
321G GLU* 3.4 5.5 + - - +
322G ASP* 2.8 35.2 + - - +
408G ARG* 5.7 5.6 - - - -
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Residues in contact with PHE 319 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204G LEU* 5.1 4.0 - - + -
208G VAL* 3.6 24.0 - - + -
209G LEU* 3.5 24.2 - - + -
312G PHE* 3.9 18.6 - + + -
315G ASP 3.3 13.7 + - - +
316G LYS 3.3 2.8 + - - +
318G SER* 1.3 74.9 - - - +
320G LEU* 1.3 58.5 + - - +
321G GLU 3.1 1.6 - - - -
322G ASP* 2.9 15.9 + - + +
323G ILE* 2.9 50.0 + - + +
408G ARG* 4.1 4.0 - - + -
409G ALA* 3.7 24.2 - - + -
412G THR* 2.9 40.8 - - + -
413G GLY 5.1 0.9 - - - -
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Residues in contact with LEU 320 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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205G MET* 3.5 40.2 - - + -
209G LEU* 3.9 14.4 - - + +
211G MET* 4.0 20.2 - - + -
215G GLU* 5.7 1.6 - - - +
219G ALA* 4.3 10.3 - - + -
223G TRP* 3.2 41.4 + - + +
316G LYS* 2.6 25.8 + - + +
317G LYS* 4.3 5.6 - - - +
319G PHE* 1.3 72.5 - - - +
321G GLU* 1.3 60.4 + - - +
323G ILE* 3.7 3.4 + - + +
324G ARG* 3.4 5.4 + - - +
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Residues in contact with GLU 321 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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223G TRP* 5.2 2.3 + - - +
317G LYS* 3.4 19.7 + - + +
318G SER* 3.4 11.9 - - - +
319G PHE 3.1 0.6 - - - -
320G LEU* 1.3 76.8 - - - +
322G ASP* 1.3 61.0 + - - +
324G ARG* 2.3 50.9 + - - +
325G LYS* 2.9 41.2 + - + +
405G SER* 5.4 0.4 - - - +
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Residues in contact with ASP 322 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318G SER* 2.8 19.5 + - - +
319G PHE* 2.9 25.2 + - + +
321G GLU* 1.3 79.6 - - - +
323G ILE* 1.3 61.1 + - - +
325G LYS* 3.3 1.2 + - - +
326G ALA* 3.0 23.6 + - - +
405G SER* 2.8 43.5 + - - +
408G ARG* 3.3 38.5 + - - +
409G ALA* 4.1 4.7 - - + -
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Residues in contact with ILE 323 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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201G ALA* 3.8 34.8 - - + +
204G LEU* 3.6 35.9 - - + -
205G MET* 4.2 9.9 - - + -
209G LEU* 4.2 15.3 - - + -
223G TRP* 4.0 9.2 - - + -
319G PHE* 2.9 47.0 + - + +
320G LEU* 3.9 6.1 - - - +
322G ASP* 1.3 75.1 - - - +
324G ARG* 1.3 57.9 + - - +
326G ALA* 3.4 3.5 + - - +
327G LEU* 3.0 26.5 + - - +
409G ALA* 4.3 7.2 - - + -
423G PHE* 4.6 2.2 - - + -
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Residues in contact with ARG 324 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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223G TRP* 3.4 47.5 - - + +
226G THR* 3.8 18.5 + - - +
227G GLU* 3.3 29.0 + - - -
228G LEU* 3.6 22.8 - - + +
320G LEU 3.4 4.2 + - - +
321G GLU* 2.3 47.2 + - - +
323G ILE* 1.3 76.5 - - - +
325G LYS* 1.3 84.3 + - - +
327G LEU* 3.2 6.5 + - - +
328G TYR* 2.9 34.7 + - - +
402G CYS* 6.2 0.2 - - - -
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Residues in contact with LYS 325 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
227G GLU* 5.3 3.8 + - - -
321G GLU* 2.9 23.6 + - + +
322G ASP 3.3 0.2 + - - -
324G ARG* 1.3 106.3 - - - +
326G ALA* 1.3 57.4 + - - +
328G TYR* 4.5 1.6 - - - -
329G ALA* 3.0 29.8 + - - +
401G ASN* 2.1 56.1 + - - +
402G CYS* 3.4 25.9 - - + +
405G SER* 3.6 31.6 - - - +
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Residues in contact with ALA 326 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322G ASP 3.0 16.6 + - - +
323G ILE* 3.7 5.6 - - - +
324G ARG 3.2 0.4 - - - -
325G LYS* 1.3 75.2 - - - +
327G LEU* 1.3 58.2 + - - +
330G SER* 2.7 37.9 + - - -
406G TRP* 3.5 34.9 + - + +
409G ALA* 4.2 13.0 - - + -
410G VAL* 5.4 0.4 - - + -
423G PHE* 4.0 15.3 - - + -
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Residues in contact with LEU 327 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
194G ASP 5.4 0.2 - - - +
197G LEU* 3.6 42.8 - - + +
198G ILE* 4.3 9.0 - - + +
201G ALA* 4.3 15.7 - - + -
220G PHE* 4.8 1.1 - - + -
223G TRP* 4.4 11.7 - - + -
228G LEU* 3.7 27.8 - - + -
233G ILE* 4.6 14.4 - - + -
323G ILE 3.0 16.8 + - - +
324G ARG* 3.7 4.0 - - - +
326G ALA* 1.3 78.1 - - - +
328G TYR* 1.3 63.2 + - - +
330G SER* 4.1 0.2 - - - -
331G LYS* 3.0 27.6 + - + +
423G PHE* 3.8 12.9 - - + -
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Residues in contact with TYR 328 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
227G GLU* 3.5 46.9 - - + +
228G LEU* 3.5 28.2 - - + +
324G ARG* 2.9 22.8 + - - +
325G LYS* 4.0 4.0 - - - +
327G LEU* 1.3 78.9 - - - +
329G ALA* 1.3 60.0 + - - +
331G LYS* 3.6 3.4 + - + +
332G ILE* 3.2 38.7 + - + +
372G PHE* 4.2 28.7 - + - -
375G LYS* 5.2 3.1 - - - +
394G PHE* 4.5 13.5 - - - -
395G PHE* 5.6 1.2 - - - -
398G ALA* 4.0 28.6 - - + +
401G ASN* 5.0 1.3 - - - -
402G CYS* 3.6 24.5 - - - -
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Residues in contact with ALA 329 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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325G LYS 3.0 19.0 + - - +
326G ALA 4.1 0.2 - - - +
328G TYR* 1.3 74.7 - - - +
330G SER* 1.3 65.9 + - - +
332G ILE* 3.1 20.5 + - - +
333G ILE* 3.1 21.4 + - - +
399G VAL* 4.6 10.5 - - + +
402G CYS* 4.0 15.0 - - + -
406G TRP* 3.5 31.6 - - + -
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Residues in contact with SER 330 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197G LEU* 3.6 27.6 - - - +
280G LEU* 4.7 0.7 - - - +
326G ALA 2.7 25.4 + - - -
327G LEU 4.1 0.4 - - - -
329G ALA* 1.3 75.8 - - - +
331G LYS* 1.3 58.0 + - - +
333G ILE* 3.3 2.8 + - - +
334G SER* 2.9 28.2 + - - -
406G TRP* 3.2 23.5 + - - -
423G PHE* 3.3 10.9 - - - -
426G ALA* 3.8 22.2 - - - +
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Residues in contact with LYS 331 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
194G ASP* 3.4 36.4 + - + +
197G LEU* 3.7 14.5 - - + +
228G LEU* 5.1 15.7 - - + +
230G SER* 4.2 18.2 + - - -
232G LEU* 6.0 1.6 - - - +
233G ILE* 6.1 0.6 - - - +
327G LEU* 3.0 22.6 + - + +
328G TYR* 3.8 6.5 - - + +
329G ALA 3.2 0.2 - - - -
330G SER* 1.3 77.6 - - - +
332G ILE* 1.3 62.0 + - - +
334G SER* 3.5 1.7 + - - -
335G TYR* 3.1 52.2 + - + -
368G ILE 5.2 1.0 + - - -
370G SER* 4.1 16.6 + - - -
372G PHE* 3.7 22.7 - - + +
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Residues in contact with ILE 332 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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328G TYR* 3.2 40.2 - - + +
329G ALA* 3.1 9.7 + - - +
331G LYS* 1.3 75.1 - - - +
333G ILE* 1.3 60.4 + - - +
335G TYR* 3.4 3.5 + - - +
336G ALA* 2.9 27.6 + - + +
372G PHE* 3.5 23.1 - - + -
389G LEU* 5.0 4.9 - - + +
390G LEU* 3.9 14.4 - - + -
395G PHE* 3.8 31.6 - - + +
398G ALA* 4.5 7.6 - - + -
399G VAL* 3.6 31.6 - - + +
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Residues in contact with ILE 333 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
280G LEU* 5.4 0.7 - - + -
329G ALA 3.1 21.2 + - - +
330G SER 3.8 4.9 - - - +
332G ILE* 1.3 75.8 - - - +
334G SER* 1.3 63.8 + - - +
336G ALA* 3.3 7.5 + - - +
337G GLN* 3.0 31.8 + - - +
390G LEU* 3.9 27.6 - - + -
399G VAL* 4.4 9.4 - - + -
406G TRP* 3.6 19.1 - - + -
426G ALA* 3.6 42.4 - - + +
429G PHE* 3.8 18.4 - - + -
430G TYR* 4.1 15.3 - - + -
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Residues in contact with SER 334 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
190G ILE* 4.0 13.6 - - - +
193G GLY* 4.5 6.9 - - - -
194G ASP* 4.8 3.8 + - - -
197G LEU* 4.6 3.1 - - - -
278G VAL* 5.4 0.9 - - - +
280G LEU* 3.5 42.2 - - - +
281G ILE* 4.5 4.3 - - - +
330G SER 2.9 17.4 + - - -
331G LYS* 3.6 9.4 - - - -
333G ILE* 1.3 77.1 - - - +
335G TYR* 1.3 60.3 + - - +
337G GLN* 3.1 7.0 + - - +
338G GLY* 2.9 23.0 + - - -
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Residues in contact with TYR 335 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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190G ILE* 3.4 33.1 - - + +
194G ASP* 2.8 37.8 + - - -
331G LYS* 3.1 44.6 + - + +
332G ILE* 4.0 4.0 - - - +
334G SER* 1.3 77.1 - - - +
336G ALA* 1.3 67.0 + - - +
338G GLY* 3.6 1.1 - - - +
339G PHE* 3.1 42.7 + + + -
362G TRP* 4.3 15.7 - + - -
368G ILE* 3.9 16.7 + - + +
370G SER* 5.0 2.2 + - - -
372G PHE* 4.2 9.0 - + + -
376G ILE* 3.5 33.4 - - + -
389G LEU* 4.3 2.9 - - + -
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Residues in contact with ALA 336 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332G ILE 2.9 19.0 + - - +
333G ILE* 3.4 7.6 - - - +
334G SER 3.2 0.2 - - - -
335G TYR* 1.3 77.5 - - - +
337G GLN* 1.3 62.4 + - + +
339G PHE* 3.6 2.4 + - - +
340G MET* 3.1 29.6 + - - +
388G ASN* 3.9 11.5 + - - +
389G LEU* 3.9 19.1 + - + +
390G LEU* 3.9 28.7 - - + -
429G PHE* 5.3 1.8 - - + -
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Residues in contact with GLN 337 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
277G PRO 3.1 20.9 + - - +
278G VAL* 3.5 28.5 - - + +
279G THR* 2.9 23.8 + - - -
280G LEU* 2.8 35.2 + - - +
333G ILE* 3.0 25.2 + - - +
334G SER 3.1 5.6 + - - +
336G ALA* 1.3 74.2 - - - +
338G GLY* 1.3 64.9 + - - +
340G MET* 3.4 9.0 + - - +
341G LEU 3.2 16.6 + - - -
429G PHE* 3.1 39.2 - - + +
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Residues in contact with GLY 338 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
186G VAL* 3.9 14.5 - - - +
190G ILE* 4.1 17.3 - - - -
278G VAL* 4.6 5.6 - - - +
334G SER 2.9 13.8 + - - -
335G TYR 3.1 4.6 + - - -
337G GLN* 1.3 77.2 - - - +
339G PHE* 1.3 62.1 + - - +
341G LEU* 3.3 8.7 + - - +
342G LEU* 3.2 23.7 + - - +
362G TRP* 5.7 0.9 - - - -
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Residues in contact with PHE 339 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
335G TYR* 3.1 38.5 + + - +
336G ALA* 4.3 3.4 - - - +
338G GLY* 1.3 74.2 - - - +
340G MET* 1.3 63.6 + - - +
341G LEU 3.2 0.2 - - - -
342G LEU* 3.7 26.2 - - + +
343G ARG* 3.1 24.1 + - - +
355G TYR* 3.7 47.4 - + + -
358G ILE* 4.4 4.7 - - + -
359G ALA* 4.5 6.7 - - + -
362G TRP* 4.2 16.2 - + - -
376G ILE* 4.1 37.7 - - + -
389G LEU* 4.2 15.7 - - + +
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Residues in contact with MET 340 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
276G VAL* 3.6 9.2 - - + +
277G PRO* 3.8 22.0 - - + +
336G ALA 3.1 25.3 + - - +
337G GLN* 3.6 11.7 - - - +
338G GLY 3.2 0.2 - - - -
339G PHE* 1.3 77.7 - - - +
341G LEU* 1.3 56.6 + - - +
343G ARG* 3.6 4.1 + - - +
344G GLN* 3.1 29.1 + - - +
387G GLN 4.6 10.3 - - - +
388G ASN* 3.1 33.0 - - - +
429G PHE* 4.0 21.8 - - + -
433G TYR* 5.4 0.9 - - + -
293H LEU* 3.8 29.4 - - + -
296H GLU* 4.6 5.8 - - - +
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Residues in contact with LEU 341 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182G PHE* 4.1 12.7 - - + -
186G VAL* 3.9 13.7 - - + -
267G THR* 3.5 40.2 - - + +
270G SER* 3.5 14.8 - - - +
271G ALA* 3.8 17.7 - - - +
274G TYR* 4.6 4.7 - - + -
276G VAL* 3.6 26.2 - - + +
278G VAL* 3.8 22.7 - - + -
337G GLN 3.2 3.4 + - - +
338G GLY* 3.6 8.7 - - - +
339G PHE 3.2 0.4 - - - -
340G MET* 1.3 77.4 - - - +
342G LEU* 1.3 64.6 + - - +
345G ALA* 3.1 22.3 + - - +
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Residues in contact with LEU 342 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182G PHE* 4.0 15.9 - - + -
183G VAL* 4.2 18.6 - - + -
186G VAL* 3.6 29.8 - - + -
338G GLY 3.2 12.9 + - - +
339G PHE* 3.7 35.9 - - + +
340G MET 3.3 0.6 - - - -
341G LEU* 1.3 78.7 - - - +
343G ARG* 1.3 60.3 + - - +
345G ALA* 3.5 2.8 + - - +
346G ALA* 3.3 16.3 + - - +
353G LEU* 3.7 23.4 - - + +
355G TYR* 4.4 5.8 - - + -
358G ILE* 3.9 19.5 - - + -
362G TRP* 4.2 16.2 - - + -
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Residues in contact with ARG 343 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339G PHE 3.1 16.5 + - - +
340G MET* 4.0 4.9 - - - +
342G LEU* 1.3 75.6 - - - +
344G GLN* 1.3 66.8 + - - +
346G ALA* 3.1 5.8 + - - +
347G THR* 3.0 31.5 + - - +
355G TYR* 3.2 40.5 + - + +
384G PRO 4.6 4.4 + - - -
385G GLU* 4.4 12.5 - - - +
386G LEU 3.0 32.3 + - - +
387G GLN* 3.0 39.0 - - - +
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Residues in contact with GLN 344 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
274G TYR* 3.8 26.4 + - + +
275G GLY 4.1 10.5 + - - -
276G VAL* 3.6 24.9 - - + +
340G MET 3.1 19.4 + - - +
341G LEU 4.1 1.1 - - - +
342G LEU 3.4 0.2 - - - -
343G ARG* 1.3 77.7 - - - +
345G ALA* 1.3 56.8 + - - +
347G THR* 3.3 18.1 + - - +
348G GLU* 2.9 33.1 + - - +
293H LEU* 5.5 8.7 - - - +
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Residues in contact with ALA 345 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182G PHE* 3.5 35.0 - - + -
274G TYR* 4.5 10.5 - - + -
341G LEU 3.1 18.1 + - - +
342G LEU 3.8 3.4 - - - +
343G ARG 3.2 0.2 - - - -
344G GLN* 1.3 75.4 - - - +
346G ALA* 1.3 59.7 + - - +
348G GLU* 3.2 5.7 + - - +
349G PHE* 2.9 45.2 + - + -
351G TRP* 4.7 5.2 - - + -
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Residues in contact with ALA 346 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
342G LEU 3.3 10.0 + - - +
343G ARG 3.1 9.9 + - - +
345G ALA* 1.3 78.3 - - - +
347G THR* 1.3 61.4 + - - +
349G PHE 3.5 1.0 - - - +
350G GLY* 3.4 23.2 + - - -
351G TRP* 3.3 34.6 + - + +
353G LEU* 4.5 12.1 - - + +
355G TYR* 4.4 10.5 - - - +
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Residues in contact with THR 347 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225A LYS* 3.7 52.9 - - + +
343G ARG* 3.0 20.9 + - - +
344G GLN* 3.5 22.6 + - - +
345G ALA 3.2 0.2 - - - -
346G ALA* 1.3 75.0 - - - +
348G GLU* 1.3 65.4 + - - +
349G PHE 3.5 6.9 + - - +
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Residues in contact with GLU 348 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225A LYS 4.8 5.2 - - - +
226A THR* 5.5 2.6 - - - +
227A GLU* 5.7 0.5 - - - +
274G TYR* 3.7 47.6 - - + +
344G GLN* 2.9 22.7 + - - +
345G ALA* 3.2 7.8 + - - +
347G THR* 1.3 78.2 - - - +
349G PHE* 1.3 69.9 + - + +
260H GLN* 4.4 13.7 + - - -
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Residues in contact with PHE 349 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
226A THR* 4.0 17.2 - - - +
106G TYR* 3.8 19.7 - + - -
107G ARG* 5.9 1.6 - - + -
110G THR* 5.8 3.8 - - + -
114G ARG* 5.0 14.6 - - - -
177G GLU* 5.3 2.2 - - - +
274G TYR* 3.2 37.7 - + - -
345G ALA* 2.9 32.0 + - + +
346G ALA 3.5 3.5 - - - +
347G THR 3.5 7.4 - - - +
348G GLU* 1.3 87.7 - - + +
350G GLY* 1.3 61.0 + - - +
351G TRP* 3.9 45.8 - + + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il