Contacts of the helix formed by residues 315 - 350 (chain C) in PDB entry 5UQ9
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 315 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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312C PHE* 3.4 16.4 - - - -
314C GLY* 1.3 73.2 - - - -
316C LYS* 1.3 64.6 + - - +
317C LYS* 3.5 24.4 - - - +
318C SER* 4.2 14.0 + - - -
319C PHE* 3.7 10.0 + - - +
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Residues in contact with LYS 316 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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209C LEU* 3.8 44.3 + - + +
210C GLY 5.4 0.6 + - - -
211C MET* 3.7 20.3 - - + +
215C GLU* 3.1 38.0 + - - +
312C PHE* 3.8 2.0 - - + -
315C ASP* 1.3 73.1 - - - +
317C LYS* 1.3 67.3 + - - +
319C PHE 4.0 0.2 - - - -
320C LEU* 3.3 22.7 + - + +
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Residues in contact with LYS 317 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315C ASP* 3.2 16.8 + - - +
316C LYS* 1.3 82.3 - - - +
318C SER* 1.3 65.0 + - - +
320C LEU* 4.0 7.3 + - - +
321C GLU* 4.1 10.0 + - - +
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Residues in contact with SER 318 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315C ASP* 4.0 14.3 + - - -
317C LYS* 1.3 80.7 - - - +
319C PHE* 1.3 65.4 + - - +
320C LEU 3.4 0.2 - - - -
321C GLU* 3.4 9.7 + - - +
322C ASP* 3.1 27.3 + - - +
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Residues in contact with PHE 319 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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204C LEU* 4.9 5.6 - - + -
208C VAL* 3.7 20.4 - - + -
209C LEU* 3.6 22.4 - - + -
312C PHE* 3.7 16.2 - + + -
315C ASP 3.7 17.0 + - - +
316C LYS 3.5 3.0 + - - +
317C LYS 3.4 1.0 - - - -
318C SER* 1.3 77.4 - - - +
320C LEU* 1.3 59.8 + - - +
322C ASP* 2.9 29.6 + - - +
323C ILE* 3.0 36.7 + - + +
408C ARG* 3.9 6.3 - - + -
409C ALA* 3.9 24.0 - - + -
412C THR* 3.4 41.5 - - + -
413C GLY 5.1 0.7 - - - -
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Residues in contact with LEU 320 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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205C MET* 3.7 17.0 - - + -
209C LEU* 4.1 4.0 - - + +
211C MET* 3.6 37.0 - - + -
219C ALA* 3.8 17.7 - - + -
222C ASP* 6.4 0.7 - - + -
223C TRP* 3.4 37.2 - - + +
316C LYS* 3.3 17.7 + - + +
317C LYS 4.4 3.8 - - - +
318C SER 3.4 0.2 - - - -
319C PHE* 1.3 79.0 - - - +
321C GLU* 1.3 59.5 + - + +
323C ILE* 3.2 13.1 + - - +
324C ARG* 3.0 20.4 + - - +
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Residues in contact with GLU 321 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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223C TRP* 5.1 1.3 + - - +
317C LYS 4.1 7.2 + - - +
318C SER* 3.4 15.4 + - - +
319C PHE 3.2 0.6 - - - -
320C LEU* 1.3 81.2 - - + +
322C ASP* 1.3 62.6 + - - +
324C ARG* 2.4 37.7 + - - +
325C LYS* 3.0 65.2 + - - +
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Residues in contact with ASP 322 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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318C SER* 3.1 18.5 + - - +
319C PHE* 2.9 19.7 + - + +
321C GLU* 1.3 77.2 - - - +
323C ILE* 1.3 58.0 + - - +
325C LYS* 3.5 0.9 + - - +
326C ALA* 3.0 28.8 + - - +
405C SER* 2.8 39.5 + - - +
408C ARG* 2.5 44.9 + - - +
409C ALA* 4.1 9.4 - - + +
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Residues in contact with ILE 323 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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201C ALA* 3.6 33.9 - - + +
204C LEU* 3.7 36.6 - - + -
205C MET* 4.3 18.4 - - + +
209C LEU* 4.5 2.2 - - + -
223C TRP* 3.8 11.2 - - + -
319C PHE* 3.0 38.7 + - + +
320C LEU* 3.2 11.9 + - - +
322C ASP* 1.3 76.0 - - - +
324C ARG* 1.3 58.9 + - - +
326C ALA* 3.4 5.5 + - - +
327C LEU* 2.9 27.4 + - - +
409C ALA* 4.5 2.7 - - + -
423C PHE* 4.6 3.5 - - + -
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Residues in contact with ARG 324 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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223C TRP* 3.4 45.7 - - + +
226C THR* 2.8 25.6 + - - +
227C GLU* 2.8 35.1 + - - +
228C LEU* 3.7 19.8 - - + +
320C LEU 3.0 8.2 + - - +
321C GLU* 2.4 34.6 + - - +
322C ASP 3.2 0.2 - - - -
323C ILE* 1.3 74.0 - - - +
325C LYS* 1.3 92.9 + - - +
327C LEU* 3.3 6.4 + - - +
328C TYR* 2.9 33.3 + - - +
401C ASN* 5.6 0.4 + - - -
402C CYS* 6.0 1.0 - - - -
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Residues in contact with LYS 325 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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321C GLU* 3.0 42.3 + - - +
322C ASP 3.9 0.2 - - - +
324C ARG* 1.3 96.3 - - - +
326C ALA* 1.3 57.4 + - - +
328C TYR* 3.3 1.7 + - - -
329C ALA* 2.9 32.2 + - - +
401C ASN* 3.4 30.6 + - - +
402C CYS* 3.5 38.3 - - + +
405C SER* 3.7 31.6 + - - +
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Residues in contact with ALA 326 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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322C ASP 3.0 19.4 + - - +
323C ILE* 3.7 5.2 - - - +
325C LYS* 1.3 78.2 - - - +
327C LEU* 1.3 56.6 + - - +
329C ALA* 4.0 0.3 - - - +
330C SER* 2.9 35.5 + - - -
406C TRP* 3.5 35.1 - - + +
409C ALA* 4.2 11.9 - - + -
410C VAL* 5.6 0.4 - - + -
423C PHE* 3.8 16.6 - - + -
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Residues in contact with LEU 327 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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197C LEU* 3.4 49.1 - - + +
198C ILE* 4.0 9.6 - - + +
201C ALA* 4.5 6.5 - - + -
220C PHE* 4.8 5.4 - - + -
223C TRP* 4.1 22.7 - - + -
228C LEU* 3.9 22.8 - - + +
233C ILE* 4.5 11.7 - - + -
323C ILE 2.9 19.1 + - - +
324C ARG 3.7 4.0 - - - +
326C ALA* 1.3 76.7 - - - +
328C TYR* 1.3 61.9 + - - +
330C SER* 4.3 0.5 - - - -
331C LYS* 3.2 26.3 + - + +
423C PHE* 3.7 11.8 - - + -
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Residues in contact with TYR 328 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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227C GLU* 3.5 39.7 - - + +
228C LEU* 3.5 28.7 - - + +
324C ARG* 2.9 21.0 + - - +
325C LYS* 3.8 5.2 - - - +
327C LEU* 1.3 75.4 - - - +
329C ALA* 1.3 64.0 + - - +
331C LYS* 3.4 5.3 + - + +
332C ILE* 3.2 36.1 + - + +
372C PHE* 3.6 29.6 - + - -
394C PHE* 3.2 34.1 - + - -
398C ALA* 3.7 23.4 - - + +
402C CYS* 3.8 18.6 - - - -
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Residues in contact with ALA 329 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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325C LYS 2.9 17.9 + - - +
326C ALA 4.0 0.2 - - - +
328C TYR* 1.3 78.1 - - - +
330C SER* 1.3 61.9 + - - +
332C ILE* 3.1 14.7 + - - +
333C ILE* 3.1 26.2 + - - +
399C VAL* 4.9 8.5 - - + +
402C CYS* 3.9 15.7 - - + -
406C TRP* 3.6 34.3 - - + -
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Residues in contact with SER 330 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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197C LEU* 3.6 27.8 - - - -
280C LEU* 3.4 10.9 - - - +
326C ALA 2.9 19.0 + - - -
327C LEU 4.3 0.4 - - - -
329C ALA* 1.3 76.3 - - - +
331C LYS* 1.3 57.0 + - - +
333C ILE* 3.2 1.3 + - - +
334C SER 2.9 23.4 + - - -
406C TRP* 3.3 17.7 + - - -
423C PHE* 3.2 14.0 - - - -
426C ALA* 3.6 19.8 - - - +
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Residues in contact with LYS 331 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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194C ASP* 3.3 33.0 + - + +
197C LEU* 3.8 12.3 - - + +
228C LEU* 4.7 19.3 + - + +
230C SER* 3.9 21.6 + - - -
232C LEU* 6.3 0.6 - - - +
233C ILE* 6.0 0.8 - - - +
327C LEU* 3.2 21.6 + - + +
328C TYR* 3.7 7.2 - - + +
330C SER* 1.3 74.5 - - - +
332C ILE* 1.3 64.6 + - - +
334C SER* 3.3 2.9 + - - -
335C TYR* 3.1 53.1 + - + -
368C ILE* 5.1 1.6 + - - +
370C SER* 3.9 16.5 + - - -
372C PHE* 4.2 22.1 - - + +
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Residues in contact with ILE 332 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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328C TYR* 3.2 31.0 + - + +
329C ALA* 3.1 9.5 + - - +
331C LYS* 1.3 73.8 - - - +
333C ILE* 1.3 64.7 + - - +
335C TYR* 3.4 2.5 + - - +
336C ALA* 3.0 22.7 + - - +
372C PHE* 3.6 24.7 - - + -
389C LEU* 4.8 5.8 - - + +
390C LEU* 4.7 10.1 - - + -
395C PHE* 3.8 32.5 - - + +
398C ALA* 3.8 28.9 - - + -
399C VAL* 4.1 22.4 - - + +
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Residues in contact with ILE 333 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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280C LEU* 5.0 0.9 - - + -
329C ALA 3.1 14.6 + - - +
330C SER 3.6 7.2 - - - +
332C ILE* 1.3 75.9 - - - +
334C SER* 1.3 62.7 + - - +
336C ALA* 3.4 4.0 + - - +
337C GLN* 3.0 31.9 + - - +
390C LEU* 3.8 29.2 - - + -
399C VAL* 5.2 2.9 - - + -
406C TRP* 3.7 20.6 - - + -
426C ALA* 3.8 22.9 - - + +
429C PHE* 3.5 26.2 - - + -
430C TYR* 4.1 26.9 - - + -
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Residues in contact with SER 334 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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190C ILE* 3.6 18.2 - - - +
193C GLY* 4.6 2.1 - - - -
194C ASP* 4.3 10.1 + - - -
197C LEU* 4.8 0.7 - - - -
280C LEU* 3.5 32.2 - - - +
281C ILE* 4.2 8.4 - - - +
330C SER 2.9 13.8 + - - -
331C LYS* 3.6 11.7 - - - -
332C ILE 3.2 0.4 - - - -
333C ILE* 1.3 77.0 - - - +
335C TYR* 1.3 61.0 + - - +
337C GLN* 3.2 11.3 + - - +
338C GLY 2.9 23.2 + - - -
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Residues in contact with TYR 335 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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190C ILE* 3.4 33.0 - - + +
194C ASP* 2.7 38.1 + - - -
331C LYS* 3.1 43.2 + - + +
332C ILE 4.1 2.9 - - - +
334C SER* 1.3 79.9 - - - +
336C ALA* 1.3 62.3 + - - +
338C GLY* 3.7 0.2 - - - -
339C PHE* 3.0 44.7 + + + -
362C TRP* 4.8 2.5 - + - -
368C ILE* 3.6 24.1 + - + +
370C SER* 4.7 0.2 + - - -
372C PHE* 3.9 12.8 - + + -
373C LEU* 3.5 35.4 - - + +
376C ILE* 4.4 5.6 - - + -
389C LEU* 3.8 14.4 - - + -
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Residues in contact with ALA 336 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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332C ILE 3.0 18.5 + - - +
333C ILE 3.6 4.5 - - - +
335C TYR* 1.3 77.3 - - - +
337C GLN* 1.3 62.3 + - + +
339C PHE* 3.5 1.7 + - - +
340C MET* 3.1 29.2 + - - +
388C ASN* 3.8 11.7 + - - +
389C LEU* 3.7 22.3 + - + +
390C LEU* 3.6 29.8 - - + -
429C PHE* 5.4 1.1 - - + -
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Residues in contact with GLN 337 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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277C PRO 3.3 18.3 + - - +
278C VAL* 3.5 28.3 - - + +
279C THR* 3.0 24.7 + - - -
280C LEU* 3.0 30.4 + - - +
281C ILE* 5.5 0.2 - - - +
333C ILE* 3.0 24.7 + - - +
334C SER* 3.6 6.6 - - - +
336C ALA* 1.3 75.3 - - - +
338C GLY* 1.3 63.2 + - - +
340C MET* 3.3 12.1 + - - +
341C LEU 3.2 16.1 + - - -
429C PHE* 3.2 41.8 - - + +
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Residues in contact with GLY 338 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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186C VAL* 3.9 14.0 - - - +
190C ILE* 4.0 16.8 - - - -
278C VAL* 4.8 2.2 - - - +
281C ILE* 4.9 5.6 - - - -
334C SER 2.9 14.7 + - - -
335C TYR 3.2 3.5 + - - -
337C GLN* 1.3 77.0 - - - +
339C PHE* 1.3 62.4 + - - +
341C LEU* 3.2 17.2 + - - +
342C LEU* 3.2 15.6 + - - +
362C TRP* 6.2 0.4 - - - -
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Residues in contact with PHE 339 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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190C ILE* 6.2 0.7 - - + -
335C TYR* 3.0 43.9 + + + +
336C ALA 4.2 2.5 - - - +
338C GLY* 1.3 74.2 - - - +
340C MET* 1.3 59.2 + - - +
342C LEU* 3.3 22.9 + - + +
343C ARG* 3.0 34.3 + - - +
355C TYR* 3.6 35.4 - + + -
358C ILE* 4.3 5.6 - - + -
359C ALA* 4.5 5.4 - - + -
362C TRP* 4.0 28.9 - + - -
373C LEU* 5.2 0.4 - - + -
376C ILE* 3.9 24.7 - - + -
380C PHE* 3.7 24.9 - + + -
389C LEU* 4.3 10.5 - - + -
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Residues in contact with MET 340 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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276C VAL* 3.7 12.3 - - + +
277C PRO* 4.0 21.1 - - + -
336C ALA 3.1 16.3 + - - +
337C GLN* 3.4 16.8 - - - +
338C GLY 3.2 0.2 - - - -
339C PHE* 1.3 77.2 - - - +
341C LEU* 1.3 56.3 + - - +
343C ARG* 3.5 7.2 + - - +
344C GLN* 3.0 28.9 + - - +
387C GLN 4.8 9.0 - - - +
388C ASN* 3.1 30.5 - - - +
429C PHE* 4.3 14.4 - - + -
433C TYR* 5.5 1.1 - - + -
293D LEU* 3.6 31.4 - - + -
296D GLU* 4.8 6.5 - - - +
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Residues in contact with LEU 341 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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182C PHE* 4.1 11.9 - - + -
185C MET* 4.9 0.4 - - + -
186C VAL* 3.9 23.3 - - + -
267C THR* 3.8 30.7 - - + +
270C SER* 4.0 15.0 - - - +
271C ALA* 3.9 24.9 - - - +
274C TYR* 4.3 10.1 - - + -
276C VAL* 3.9 14.5 - - + +
278C VAL* 4.1 12.8 - - + -
337C GLN 3.2 8.2 + - - +
338C GLY* 3.2 11.5 + - - +
340C MET* 1.3 76.9 - - - +
342C LEU* 1.3 64.1 + - - +
344C GLN* 3.4 0.3 + - - +
345C ALA* 3.1 23.0 + - - +
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Residues in contact with LEU 342 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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182C PHE* 3.8 12.6 - - + -
183C VAL* 3.8 24.5 - - + -
186C VAL* 3.6 28.0 - - + -
338C GLY 3.2 12.4 + - - +
339C PHE* 3.3 34.7 + - + +
341C LEU* 1.3 77.5 - - - +
343C ARG* 1.3 57.5 + - - +
345C ALA* 3.5 1.2 + - - +
346C ALA* 3.0 30.1 + - - +
353C LEU* 3.5 15.2 - - + +
355C TYR* 4.3 5.8 - - + -
358C ILE* 3.9 17.3 - - + -
362C TRP* 4.1 18.6 - - + -
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Residues in contact with ARG 343 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339C PHE* 3.0 19.8 + - - +
340C MET* 3.9 6.1 - - - +
341C LEU 3.3 0.2 - - - -
342C LEU* 1.3 76.7 - - - +
344C GLN* 1.3 63.1 + - - +
346C ALA* 3.4 1.6 + - - +
347C THR* 2.9 37.0 + - - +
355C TYR* 3.2 51.2 + - + +
380C PHE* 4.7 4.6 - - - -
384C PRO 3.6 4.4 + - - -
385C GLU* 3.5 27.3 + - - +
386C LEU 3.2 27.5 + - - -
387C GLN* 4.1 27.4 + - - +
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Residues in contact with GLN 344 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
274C TYR* 3.9 23.1 + - + +
276C VAL* 3.7 26.4 - - + +
340C MET 3.0 19.0 + - - +
341C LEU 3.9 2.5 - - - +
342C LEU 3.3 0.2 - - - -
343C ARG* 1.3 78.6 - - - +
345C ALA* 1.3 57.5 + - - +
347C THR* 3.4 8.2 + - - +
348C GLU* 3.0 43.2 + - - +
260D GLN* 5.7 3.8 - - - +
225E LYS* 3.2 33.9 + - - +
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Residues in contact with ALA 345 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182C PHE* 3.4 42.0 - - + -
274C TYR* 4.4 17.2 - - + -
341C LEU 3.1 10.5 + - - +
342C LEU 4.1 0.7 - - - +
344C GLN* 1.3 75.2 - - - +
346C ALA* 1.3 60.1 + - - +
348C GLU* 4.2 6.1 - - - -
349C PHE* 3.0 40.8 + - + +
351C TRP* 4.4 4.0 - - + -
353C LEU* 6.2 0.2 - - + -
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Residues in contact with ALA 346 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
342C LEU 3.0 19.2 + - - +
343C ARG 3.7 4.0 - - - +
345C ALA* 1.3 76.2 - - - +
347C THR* 1.3 58.5 + - - +
350C GLY* 3.0 8.1 + - - -
351C TRP* 2.8 53.3 + - - +
353C LEU* 3.8 20.4 - - + +
355C TYR* 3.8 15.0 - - - +
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Residues in contact with THR 347 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343C ARG* 2.9 26.1 + - - +
344C GLN* 3.7 9.2 - - - +
346C ALA* 1.3 75.5 - - - +
348C GLU* 1.3 66.1 + - - +
350C GLY* 3.6 7.5 + - - -
355C TYR* 5.5 0.3 + - - -
222E ASP* 3.7 36.4 - - + +
225E LYS* 4.1 28.3 - - + +
226E THR* 3.7 13.0 - - + +
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Residues in contact with GLU 348 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
274C TYR* 3.4 37.4 - - + +
344C GLN* 3.0 32.0 + - - +
345C ALA 3.3 3.8 + - - +
347C THR* 1.3 80.3 - - - +
349C PHE* 1.3 67.8 + - + +
350C GLY* 4.5 0.2 - - - -
225E LYS 4.3 14.4 - - - +
226E THR* 4.4 19.6 - - - +
227E GLU* 5.6 1.6 - - - +
324E ARG* 4.4 7.8 + - - -
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Residues in contact with PHE 349 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106C TYR* 3.7 22.2 - + - -
107C ARG* 5.4 7.0 - - + -
110C THR* 5.5 7.4 - - + -
114C ARG* 5.3 12.2 + - - -
177C GLU* 4.9 4.4 - - - +
182C PHE* 5.2 0.4 - + - -
274C TYR* 3.0 32.3 - + - -
345C ALA* 3.0 28.2 + - + +
348C GLU* 1.3 81.9 - - + +
350C GLY* 1.3 59.5 + - - +
351C TRP* 3.4 54.3 + + + +
321E GLU* 3.2 17.4 - - - +
324E ARG* 4.4 2.8 + - - +
325E LYS* 4.6 4.9 + - - -
----------------------------------------------------------
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Residues in contact with GLY 350 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
176C ASP* 5.8 0.5 - - - +
346C ALA 3.0 9.7 + - - -
347C THR 4.2 5.8 - - - -
348C GLU 3.2 3.6 - - - -
349C PHE* 1.3 78.7 - - - +
351C TRP* 1.3 66.2 + - - +
352C THR* 4.5 3.3 + - - -
317E LYS 5.0 3.3 - - - +
321E GLU* 3.3 34.3 - - - +
324E ARG* 5.3 0.7 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il