Contacts of the helix formed by residues 315 - 350 (chain H) in PDB entry 5UQ9
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 315 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312H PHE* 4.2 1.0 - - - -
314H GLY* 1.3 70.5 - - - -
316H LYS* 1.3 64.1 + - - +
317H LYS* 3.4 12.9 + - - +
318H SER* 2.7 34.6 + - - -
319H PHE* 3.0 30.0 + - - +
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Residues in contact with LYS 316 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
209H LEU* 4.7 15.1 - - + +
312H PHE* 4.4 13.9 - - + -
314H GLY 3.3 8.2 + - - +
315H ASP* 1.3 74.8 + - - +
317H LYS* 1.3 68.4 + - + +
319H PHE* 3.3 2.1 + - - +
320H LEU* 2.8 32.2 + - - +
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Residues in contact with LYS 317 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315H ASP* 3.4 10.2 + - - +
316H LYS* 1.3 89.0 - - + +
318H SER* 1.3 61.3 + - - +
320H LEU* 4.0 8.5 - - - +
321H GLU* 3.2 27.0 + - - +
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Residues in contact with SER 318 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315H ASP* 2.7 37.2 + - - +
316H LYS 3.2 0.6 - - - -
317H LYS* 1.3 76.8 - - - +
319H PHE* 1.3 60.1 + - - +
321H GLU* 3.3 8.2 + - - +
322H ASP* 2.7 33.3 + - - +
408H ARG* 5.4 4.5 - - - -
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Residues in contact with PHE 319 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204H LEU* 5.0 6.3 - - + -
208H VAL* 3.6 28.7 - - + -
209H LEU* 3.5 12.6 - - + -
312H PHE* 3.4 27.1 - + + -
315H ASP 3.0 18.7 + - - +
316H LYS 3.8 3.1 - - - +
318H SER* 1.3 75.4 - - - +
320H LEU* 1.3 60.2 + - - +
322H ASP* 2.8 14.3 + - + -
323H ILE* 2.8 50.2 + - + +
408H ARG* 5.1 5.2 - - + +
409H ALA* 3.4 32.8 - - + -
412H THR* 3.6 27.6 - - + -
413H GLY 4.9 1.8 - - - -
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Residues in contact with LEU 320 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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205H MET* 4.9 6.7 - - + -
209H LEU* 4.0 10.1 - - + +
211H MET* 3.7 35.0 - - + -
219H ALA* 4.4 15.7 - - + -
223H TRP* 4.8 9.6 - - + +
316H LYS* 2.8 21.5 + - + +
317H LYS* 4.1 8.3 - - - +
319H PHE* 1.3 73.3 - - - +
321H GLU* 1.3 60.9 + - + +
323H ILE* 3.7 12.4 + - + -
324H ARG* 3.1 45.6 - - - +
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Residues in contact with GLU 321 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
223H TRP* 3.1 40.7 + - - +
226H THR* 6.2 0.2 - - - +
317H LYS 3.2 17.1 + - - +
318H SER* 3.5 10.1 - - - +
319H PHE 3.0 0.6 - - - -
320H LEU* 1.3 80.5 - - + +
322H ASP* 1.3 60.2 + - - +
324H ARG* 3.5 2.1 + - - +
325H LYS* 3.1 42.1 + - - +
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Residues in contact with ASP 322 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318H SER* 2.7 21.0 + - - +
319H PHE* 2.8 16.8 + - + +
321H GLU* 1.3 73.7 - - - +
323H ILE* 1.3 64.4 + - - +
324H ARG 3.1 2.2 - - - -
325H LYS* 4.3 2.1 + - - -
326H ALA* 3.0 26.9 + - - +
405H SER* 2.5 51.8 + - - +
408H ARG* 2.7 39.9 + - + -
409H ALA* 3.9 4.0 - - + +
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Residues in contact with ILE 323 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201H ALA* 4.1 20.2 - - + +
204H LEU* 3.7 38.6 - - + -
205H MET* 4.9 6.5 - - + +
209H LEU* 4.1 20.6 - - + -
319H PHE* 2.8 52.1 + - + +
320H LEU* 3.9 10.3 - - - +
321H GLU 3.3 0.4 - - - -
322H ASP* 1.3 76.7 - - - +
324H ARG* 1.3 67.3 + - - +
326H ALA* 3.9 2.8 - - - +
327H LEU* 3.2 21.1 + - - +
409H ALA* 4.1 6.7 - - + -
423H PHE* 4.0 5.2 - - + -
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Residues in contact with ARG 324 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201H ALA* 4.8 2.5 - - - +
205H MET* 3.1 27.5 - - - +
219H ALA* 3.9 14.8 + - - +
220H PHE* 3.2 45.4 - - - +
223H TRP* 3.3 63.7 - - + +
320H LEU* 3.1 26.5 - - - +
321H GLU 3.5 1.0 + - - +
322H ASP 3.1 0.4 - - - -
323H ILE* 1.3 93.3 - - - +
325H LYS* 1.3 55.3 + - - +
326H ALA 3.1 1.3 - - - -
327H LEU* 3.3 23.8 - - + +
328H TYR* 2.6 35.2 + - - +
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Residues in contact with LYS 325 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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223H TRP* 4.3 17.9 - - + -
227H GLU* 5.8 3.6 - - - +
321H GLU* 3.1 26.2 + - - +
322H ASP* 4.3 2.8 + - - -
324H ARG* 1.3 75.1 - - - +
326H ALA* 1.3 58.4 + - - +
328H TYR* 3.5 4.4 + - - +
329H ALA* 3.0 28.8 + - - +
401H ASN* 3.5 34.3 - - - +
402H CYS* 3.5 27.5 - - + +
405H SER* 2.8 36.6 + - - -
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Residues in contact with ALA 326 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322H ASP 3.0 19.7 + - - +
323H ILE 3.9 4.5 - - - +
325H LYS* 1.3 74.4 - - - +
327H LEU* 1.3 59.9 + - - +
329H ALA* 3.3 1.2 + - - +
330H SER* 2.8 36.3 + - - -
406H TRP* 3.3 45.7 + - + +
409H ALA* 4.2 8.1 - - + -
410H VAL* 5.3 0.4 - - + -
423H PHE* 4.2 9.4 - - + -
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Residues in contact with LEU 327 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197H LEU* 3.5 44.0 - - + +
198H ILE* 4.1 15.5 - - + +
201H ALA* 4.1 12.3 - - + -
220H PHE* 5.4 3.1 - - + -
229H ASP* 5.5 7.0 - - - +
233H ILE* 6.5 1.3 - - + -
323H ILE 3.2 15.5 + - - +
324H ARG* 3.0 32.2 + - + +
326H ALA* 1.3 77.5 - - - +
328H TYR* 1.3 58.9 + - - +
330H SER* 3.8 1.0 - - - -
331H LYS* 3.0 34.5 + - - +
423H PHE* 3.5 13.4 - - + -
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Residues in contact with TYR 328 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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223H TRP* 5.3 9.4 - + + -
227H GLU* 4.6 15.9 - - + -
228H LEU* 3.1 55.5 - - + +
229H ASP* 5.3 5.4 - - - +
324H ARG 2.6 20.0 + - - +
325H LYS* 3.9 6.5 - - - +
327H LEU* 1.3 72.6 - - - +
329H ALA* 1.3 64.2 + - - +
331H LYS* 3.2 12.2 + - + +
332H ILE* 3.1 48.4 + - + +
372H PHE* 3.6 22.9 - + - -
394H PHE* 3.9 18.0 - - - -
395H PHE* 4.5 0.3 - - - -
398H ALA* 4.2 13.9 - - + +
402H CYS* 4.2 16.8 - - - -
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Residues in contact with ALA 329 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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325H LYS 3.0 17.8 + - - +
326H ALA 3.9 1.3 - - - +
328H TYR* 1.3 74.2 - - - +
330H SER* 1.3 65.3 + - - +
332H ILE* 3.1 23.0 + - - +
333H ILE* 3.1 17.5 + - - +
399H VAL* 4.6 11.2 - - + +
402H CYS* 4.0 15.0 - - + -
406H TRP* 3.5 31.4 - - + -
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Residues in contact with SER 330 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197H LEU* 3.6 27.8 - - - -
280H LEU* 3.5 8.1 - - - +
326H ALA 2.8 23.8 + - - -
327H LEU 3.8 2.7 - - - -
329H ALA* 1.3 72.9 - - - +
331H LYS* 1.3 66.5 + - - +
333H ILE* 3.2 1.7 + - - +
334H SER* 3.2 20.8 + - - -
406H TRP* 3.4 17.2 + - - -
422H CYS 4.6 0.2 - - - -
423H PHE* 3.2 17.6 - - - -
426H ALA* 4.0 16.8 - - - -
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Residues in contact with LYS 331 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
194H ASP* 3.3 51.0 + - - +
197H LEU* 3.8 9.8 - - + +
198H ILE* 4.8 12.5 - - - +
228H LEU 6.0 0.2 - - - -
229H ASP* 4.7 15.5 + - - -
232H LEU* 5.9 1.8 - - - +
233H ILE* 5.4 3.8 - - - +
327H LEU* 3.0 24.0 + - - +
328H TYR* 3.4 15.7 - - + +
329H ALA 3.2 0.2 - - - -
330H SER* 1.3 75.0 - - - +
332H ILE* 1.3 59.4 + - - +
334H SER* 3.0 9.2 + - - -
335H TYR* 3.0 34.3 + - + +
370H SER* 5.4 8.6 + - - -
372H PHE* 3.5 31.4 - - + -
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Residues in contact with ILE 332 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328H TYR* 3.2 40.6 - - + +
329H ALA* 3.1 14.9 + - + +
331H LYS* 1.3 74.8 - - - +
333H ILE* 1.3 61.3 + - + +
335H TYR* 3.5 1.7 + - - +
336H ALA* 2.9 28.3 + - + +
372H PHE* 3.8 22.7 - - + -
389H LEU* 5.1 5.1 - - + +
390H LEU* 4.4 17.3 - - + -
395H PHE* 3.6 42.2 - - + +
398H ALA* 4.4 11.2 - - + -
399H VAL* 5.0 7.6 - - + +
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Residues in contact with ILE 333 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
280H LEU* 5.1 1.3 - - + -
329H ALA 3.1 13.5 + - - +
330H SER 3.2 6.9 + - - +
332H ILE* 1.3 78.2 - - + +
334H SER* 1.3 58.5 + - - +
336H ALA* 3.2 3.6 + - - +
337H GLN* 2.9 36.9 + - - +
390H LEU* 4.1 23.3 - - + -
399H VAL* 5.5 1.6 - - + -
406H TRP* 3.6 20.2 - - + -
426H ALA* 3.8 22.9 - - + +
429H PHE* 3.5 25.1 - - + -
430H TYR* 3.8 33.7 - - + -
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Residues in contact with SER 334 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
190H ILE* 4.9 8.4 - - - +
193H GLY* 5.5 1.6 - - - -
194H ASP* 4.5 5.5 + - - -
197H LEU* 4.5 1.4 - - - +
278H VAL* 5.0 2.6 - - - +
280H LEU* 3.7 35.9 - - - +
281H ILE* 4.7 10.0 - - - +
330H SER 3.2 8.2 + - - -
331H LYS* 3.0 15.1 + - - -
333H ILE* 1.3 77.4 - - - +
335H TYR* 1.3 67.9 + - - +
337H GLN* 3.2 14.1 + - - +
338H GLY* 2.9 25.1 + - - -
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Residues in contact with TYR 335 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
190H ILE* 3.2 32.4 - - + +
194H ASP* 2.8 38.9 + - - -
331H LYS* 3.0 29.7 + - + +
332H ILE 4.0 2.5 - - - +
334H SER* 1.3 82.3 + - - +
336H ALA* 1.3 65.9 + - - +
338H GLY* 3.7 2.0 - - - +
339H PHE* 3.0 42.1 + + + -
362H TRP* 4.5 6.3 - + - -
368H ILE* 3.8 15.0 + - + +
370H SER* 5.6 1.0 - - - -
372H PHE* 3.4 23.7 - + + -
373H LEU* 3.8 23.3 - - + +
376H ILE* 3.5 27.6 - - + -
389H LEU* 4.1 4.5 - - + -
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Residues in contact with ALA 336 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332H ILE* 2.9 19.1 + - + +
333H ILE* 3.2 9.2 + - + +
335H TYR* 1.3 77.7 - - - +
337H GLN* 1.3 62.9 + - + +
339H PHE* 3.5 2.6 + - - +
340H MET* 3.1 28.7 + - - +
388H ASN* 4.4 12.4 + - - +
389H LEU* 3.9 29.7 + - + +
390H LEU* 4.4 14.6 - - + -
429H PHE* 5.5 2.0 - - + -
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Residues in contact with GLN 337 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
276H VAL* 5.6 0.2 - - - -
277H PRO 3.1 22.8 + - - +
278H VAL* 3.6 28.5 - - + +
279H THR* 3.0 35.0 + - - -
280H LEU* 3.3 19.1 + - - +
333H ILE* 2.9 24.2 + - - +
334H SER* 3.6 6.2 - - - +
336H ALA* 1.3 74.5 - - - +
338H GLY* 1.3 62.6 + - - +
340H MET* 3.2 11.5 + - - +
341H LEU 3.0 17.7 + - - -
429H PHE* 3.2 40.0 - - + +
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Residues in contact with GLY 338 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
186H VAL* 4.2 7.3 - - - +
190H ILE* 4.4 18.8 - - - -
278H VAL* 4.6 6.5 - - - +
334H SER 2.9 15.3 + - - -
335H TYR 3.3 3.3 + - - -
336H ALA 3.3 0.4 - - - -
337H GLN* 1.3 77.4 - - - +
339H PHE* 1.3 58.9 + - - +
341H LEU* 3.1 10.2 + - - +
342H LEU* 3.0 30.3 + - - +
362H TRP* 6.2 0.2 - - - -
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Residues in contact with PHE 339 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
190H ILE* 6.4 0.2 - - + -
335H TYR* 3.0 41.8 + + - +
336H ALA 4.1 3.4 - - - +
338H GLY* 1.3 74.3 - - - +
340H MET* 1.3 55.7 + - - +
341H LEU 3.2 0.2 - - - -
342H LEU* 3.6 17.4 - - + +
343H ARG* 2.7 33.4 + - - +
355H TYR* 3.3 45.9 - + + -
358H ILE* 4.9 2.7 - - + -
359H ALA* 4.5 11.0 - - + -
362H TRP* 4.3 24.5 - + - -
373H LEU* 6.3 0.2 - - + -
376H ILE* 3.9 23.8 - - + -
380H PHE* 3.5 30.1 - + + -
389H LEU* 4.3 9.6 - - + +
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Residues in contact with MET 340 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293G LEU* 3.7 30.1 - - + -
296G GLU* 4.2 1.1 - - - +
276H VAL* 3.8 6.9 - - + +
277H PRO* 4.2 18.2 - - + -
336H ALA* 3.1 22.3 + - - +
337H GLN* 3.2 16.6 + - - +
339H PHE* 1.3 75.7 - - - +
341H LEU* 1.3 58.8 + - - +
343H ARG* 3.4 37.1 + - - +
344H GLN* 2.9 27.5 + - - +
387H GLN 5.1 2.5 - - - +
388H ASN* 3.2 31.2 - - - +
429H PHE* 4.2 18.2 - - + -
433H TYR* 4.8 1.6 - - + -
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Residues in contact with LEU 341 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182H PHE* 4.0 12.1 - - + -
185H MET* 4.8 0.2 - - + -
186H VAL* 4.0 22.0 - - + -
267H THR* 3.7 29.6 - - + +
270H SER* 3.9 12.3 - - - +
271H ALA* 3.9 15.9 - - - +
274H TYR* 4.2 12.3 - - + -
276H VAL* 3.6 24.6 - - + +
278H VAL* 4.1 14.1 - - + -
337H GLN 3.0 11.8 + - - +
338H GLY* 3.1 11.0 + - - +
340H MET* 1.3 73.6 - - - +
342H LEU* 1.3 59.9 + - - +
344H GLN* 3.4 0.9 + - - -
345H ALA* 3.0 26.9 + - - +
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Residues in contact with LEU 342 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182H PHE* 3.6 32.5 - - + -
183H VAL* 4.3 14.8 - - + -
186H VAL* 3.7 16.4 - - + -
338H GLY 3.0 19.5 + - - +
339H PHE* 3.7 28.3 - - + +
340H MET 3.3 0.2 - - - -
341H LEU* 1.3 72.4 - - - +
343H ARG* 1.3 65.9 + - - +
345H ALA* 3.4 1.3 + - - +
346H ALA* 3.1 19.1 + - - +
353H LEU* 3.5 18.8 - - + +
355H TYR* 4.1 12.3 - - + -
358H ILE* 4.2 21.3 - - + -
362H TRP* 4.6 18.2 - - + -
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Residues in contact with ARG 343 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293G LEU* 4.7 11.0 - - - +
296G GLU* 3.0 38.4 + - - -
276H VAL* 4.6 7.1 - - - +
277H PRO* 5.5 1.0 - - - +
339H PHE 2.7 22.5 + - - +
340H MET* 3.4 45.0 + - - +
341H LEU 3.3 0.2 - - - -
342H LEU* 1.3 73.3 - - - +
344H GLN* 1.3 80.0 + - - +
346H ALA* 3.4 4.5 + - - +
347H THR* 2.9 33.0 + - - +
355H TYR* 3.8 18.5 + - + +
386H LEU 5.9 2.5 - - - +
387H GLN* 4.1 34.9 + - - +
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Residues in contact with GLN 344 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
260G GLN* 4.4 13.4 + - - -
274H TYR* 3.9 28.9 + - + +
275H GLY 6.1 0.2 - - - -
276H VAL* 3.6 18.6 - - + -
340H MET 2.9 16.7 + - - +
341H LEU 3.9 1.6 - - - +
342H LEU 3.3 0.2 - - - -
343H ARG* 1.3 91.2 + - - +
345H ALA* 1.3 59.8 - - - +
347H THR* 3.2 16.4 + - - +
348H GLU* 2.8 36.1 + - + +
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Residues in contact with ALA 345 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182H PHE* 3.6 35.2 - - + -
274H TYR* 4.8 6.2 - - + -
341H LEU 3.0 16.8 + - - +
342H LEU 3.7 3.8 - - - +
343H ARG 3.3 0.2 - - - -
344H GLN* 1.3 77.0 - - - +
346H ALA* 1.3 61.3 + - - +
348H GLU* 3.4 2.4 + - - -
349H PHE* 3.0 46.2 + - + +
351H TRP* 4.3 7.8 - - + -
353H LEU* 5.5 0.4 - - + -
----------------------------------------------------------
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Residues in contact with ALA 346 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
342H LEU 3.1 16.5 + - - +
343H ARG 3.7 4.7 - - - +
345H ALA* 1.3 76.1 - - - +
347H THR* 1.3 58.1 + - - +
350H GLY* 2.9 24.3 + - - -
351H TRP* 2.9 36.1 + - - +
353H LEU* 3.9 16.2 - - + +
355H TYR* 3.8 15.7 - - - +
----------------------------------------------------------
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Residues in contact with THR 347 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
343H ARG* 2.9 21.9 + - - +
344H GLN* 3.2 21.7 + - - +
346H ALA* 1.3 76.5 - - - +
348H GLU* 1.3 65.9 + - - +
349H PHE 3.6 0.3 + - - -
350H GLY* 3.8 5.2 + - - -
----------------------------------------------------------
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Residues in contact with GLU 348 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
274H TYR* 4.4 22.8 - - + -
344H GLN* 2.8 29.1 + - + +
345H ALA* 3.9 4.9 - - - +
347H THR* 1.3 76.6 - - - +
349H PHE* 1.3 85.1 + - + +
----------------------------------------------------------
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Residues in contact with PHE 349 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106H TYR* 4.0 14.4 - + - -
107H ARG* 5.8 2.0 - - + -
110H THR* 5.7 8.7 - - + -
177H GLU* 4.8 6.5 - - - +
274H TYR* 3.1 35.2 - + - -
345H ALA* 3.0 32.3 + - + +
348H GLU* 1.3 93.1 - - + +
350H GLY* 1.3 60.0 + - - +
351H TRP* 3.4 52.9 - + + +
----------------------------------------------------------
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Residues in contact with GLY 350 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
176H ASP* 4.8 4.3 - - - +
346H ALA 2.9 11.2 + - - -
347H THR* 3.8 4.3 + - - -
348H GLU 3.5 2.2 - - - -
349H PHE* 1.3 79.0 - - - +
351H TRP* 1.3 66.9 + - - +
352H THR* 4.6 3.1 + - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il