Contacts of the helix formed by residues 291 - 336 (chain A) in PDB entry 5WJ9
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLN 291 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
248A ASN* 3.7 22.1 + - + +
249A GLU* 2.8 29.7 + - - +
250A ILE* 4.7 2.8 - - - +
251A PRO* 4.3 12.9 - - - +
286A HIS 5.4 2.6 + - - -
287A PRO* 5.3 1.9 - - - +
288A SER* 4.4 17.1 + - - +
289A VAL* 4.6 8.5 - - + +
290A PHE* 1.3 78.8 - - - +
292A HIS* 1.3 69.7 + - - +
293A GLY 3.6 2.0 + - - -
294A ASP* 4.7 4.7 - - + -
295A ASN* 3.5 31.0 + - + +
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Residues in contact with HIS 292 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288A SER* 4.2 19.2 + - - -
289A VAL 5.7 5.8 - - - -
290A PHE* 3.9 4.8 - - - -
291A GLN* 1.3 86.3 + - + +
293A GLY* 1.3 62.0 + - - +
295A ASN* 4.2 2.6 - - - +
296A SER* 3.9 14.4 + - - -
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Residues in contact with GLY 293 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291A GLN 3.6 0.2 - - - -
292A HIS* 1.3 76.9 - - - +
294A ASP* 1.3 52.9 + - - +
295A ASN 3.2 0.2 - - - -
296A SER* 2.6 36.0 + - - -
297A PHE* 2.8 33.6 + - - -
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Residues in contact with ASP 294 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247A ASN* 2.9 32.5 - - - +
248A ASN* 4.5 13.0 - - + +
249A GLU* 6.0 0.5 - - - +
291A GLN* 4.2 5.0 + - + +
292A HIS 3.7 0.2 - - - -
293A GLY* 1.3 73.6 - - - +
295A ASN* 1.3 63.2 + - - +
297A PHE* 3.9 10.1 - - - +
298A ARG* 3.1 56.3 + - - +
376A GLU* 5.2 4.3 - - - +
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Residues in contact with ASN 295 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291A GLN* 3.5 31.2 + - + +
292A HIS 4.2 4.3 - - - +
293A GLY 3.2 0.6 - - - -
294A ASP* 1.3 79.7 + - - +
296A SER* 1.3 57.0 + - - +
299A LEU* 3.2 29.4 + - - +
376A GLU* 5.1 10.4 - - - +
377A ALA* 4.8 13.7 - - - +
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Residues in contact with SER 296 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292A HIS 3.9 7.2 + - - -
293A GLY* 2.6 32.2 + - - -
295A ASN* 1.3 74.1 - - - +
297A PHE* 1.3 66.7 + - - -
299A LEU* 3.6 7.3 + - - +
300A LEU* 2.8 45.2 + - - +
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Residues in contact with PHE 297 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293A GLY* 2.8 44.0 + - - +
294A ASP* 3.9 8.1 - - - +
296A SER* 1.3 79.8 + - - +
298A ARG* 1.3 59.8 + - + +
300A LEU* 3.1 13.1 + - + +
301A PHE* 2.8 30.6 + - - +
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Residues in contact with ARG 298 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82A LEU* 3.0 41.5 + - + +
83A PHE* 4.3 2.2 - - - +
86A SER* 4.3 13.9 + - - -
247A ASN* 3.4 36.7 + - - +
294A ASP* 3.1 41.8 + - - +
297A PHE* 1.3 73.7 - - + +
299A LEU* 1.3 63.9 + - - +
301A PHE* 3.8 7.0 - - - +
302A ASP* 2.9 31.6 + - - +
372A LYS* 3.2 33.4 - - - +
376A GLU* 4.0 31.6 - - - +
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Residues in contact with LEU 299 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295A ASN* 3.2 26.1 + - - +
296A SER* 3.6 8.9 + - - +
297A PHE 3.3 0.2 - - - -
298A ARG* 1.3 78.6 - - - +
300A LEU* 1.3 73.4 + - + +
302A ASP* 2.8 24.0 - - - +
303A VAL* 3.4 23.2 - - + +
373A ILE* 4.3 18.2 - - + -
376A GLU* 5.3 2.2 + - - +
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Residues in contact with LEU 300 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
296A SER* 2.8 39.8 + - - +
297A PHE* 3.6 14.6 - - + +
299A LEU* 1.3 82.7 - - + +
301A PHE* 1.3 57.8 + - - +
303A VAL* 3.3 16.5 - - + +
304A VAL* 3.1 28.7 - - + +
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Residues in contact with PHE 301 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74A LEU* 6.4 1.1 - - + -
75A VAL* 3.5 34.8 - - + -
78A VAL* 3.8 27.8 - - + -
79A GLN* 3.8 23.1 - - + -
82A LEU* 4.5 13.9 - - + -
297A PHE 2.8 19.0 + - - +
298A ARG* 3.8 9.0 - - - +
299A LEU 3.3 0.4 - - - -
300A LEU* 1.3 71.7 - - - +
302A ASP* 1.3 60.7 + - - +
304A VAL* 3.1 10.2 + - + +
305A VAL* 3.0 36.6 + - + +
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Residues in contact with ASP 302 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A GLN* 3.3 24.7 - - - +
298A ARG 2.9 17.3 + - - +
299A LEU 2.8 19.8 - - - +
301A PHE* 1.3 75.9 - - - +
303A VAL* 1.3 70.9 + - - +
305A VAL* 3.2 5.8 + - - +
306A ILE* 2.8 36.4 + - + +
369A THR* 4.2 13.0 - - + +
372A LYS* 3.9 15.3 - - - -
373A ILE* 3.2 36.9 - - - +
376A GLU* 5.7 0.7 - - - +
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Residues in contact with VAL 303 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299A LEU* 3.4 24.7 - - + +
300A LEU* 3.3 28.9 - - + +
302A ASP* 1.3 86.0 + - - +
304A VAL* 1.3 59.4 + - + +
306A ILE* 3.6 14.3 - - + +
307A LEU* 2.8 46.0 + - + +
373A ILE* 5.7 1.6 - - + -
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Residues in contact with VAL 304 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71A VAL* 6.4 0.2 - - + -
75A VAL* 4.9 12.1 - - + -
300A LEU* 3.1 18.6 - - + +
301A PHE* 3.1 11.5 + - + +
303A VAL* 1.3 77.2 - - + +
305A VAL* 1.3 56.7 + - - +
307A LEU* 3.5 11.7 - - + +
308A THR* 2.8 47.0 + - + +
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Residues in contact with VAL 305 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A VAL* 3.3 21.5 - - + -
76A VAL* 4.1 9.9 - - + -
79A GLN* 4.1 14.4 - - + +
301A PHE* 3.0 28.5 + - + +
302A ASP* 3.2 13.0 + - - +
304A VAL* 1.3 75.7 - - - +
306A ILE* 1.3 52.2 + - - +
308A THR* 2.7 20.4 + - - -
309A CYS* 2.8 29.3 + - - -
365A THR* 3.8 22.4 - - + -
369A THR* 3.5 21.5 - - + -
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Residues in contact with ILE 306 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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302A ASP* 2.8 26.8 + - - +
303A VAL* 3.6 16.2 - - + +
305A VAL* 1.3 76.3 - - - +
307A LEU* 1.3 55.9 + - + +
309A CYS* 4.0 4.6 - - - +
310A SER* 2.7 43.2 + - - +
366A ILE* 3.9 25.1 - - + +
369A THR* 3.2 31.2 - - - +
370A ILE* 4.5 16.6 - - + +
373A ILE* 6.3 2.5 - - + -
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Residues in contact with LEU 307 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
303A VAL* 2.8 36.0 + - + +
304A VAL* 3.5 14.1 - - + +
305A VAL 3.3 0.4 - - - -
306A ILE* 1.3 78.8 - - + +
308A THR* 1.3 58.4 + - + +
310A SER* 2.9 7.4 + - - +
311A LEU* 2.8 35.6 + - + +
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Residues in contact with THR 308 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A LEU* 4.0 28.0 - - + +
71A VAL* 4.4 17.5 - - + -
72A LYS* 3.8 20.9 - - - +
75A VAL* 4.0 9.8 - - + +
304A VAL* 2.8 33.5 + - + +
305A VAL* 2.7 25.3 + - - -
307A LEU* 1.3 73.1 - - + +
309A CYS* 1.3 58.0 + - - +
311A LEU* 4.0 1.7 - - - +
312A SER* 3.1 29.6 + - - -
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Residues in contact with CYS 309 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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72A LYS* 3.7 20.2 - - - +
76A VAL* 4.3 2.2 - - - -
305A VAL* 2.8 32.5 + - - +
306A ILE* 4.0 4.9 - - - +
308A THR* 1.3 76.2 + - - +
310A SER* 1.3 57.8 + - - +
312A SER* 2.7 20.5 + - - -
313A PHE* 2.8 11.8 + - - +
362A ASP* 3.2 23.8 - - - +
365A THR* 3.4 39.3 - - - -
366A ILE* 4.7 7.6 - - + -
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Residues in contact with SER 310 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306A ILE* 2.7 31.4 + - - +
307A LEU* 2.9 18.4 + - - +
309A CYS* 1.3 70.2 - - - +
311A LEU* 1.3 59.3 + - - +
313A PHE* 3.3 11.3 + - - +
314A LEU* 2.8 30.7 + - - +
362A ASP* 4.3 1.5 + - - -
366A ILE* 4.6 12.3 - - - +
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Residues in contact with LEU 311 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64A CYS* 5.1 9.0 - - - -
68A LEU* 4.0 30.1 - - + -
307A LEU* 2.8 23.9 + - + +
308A THR* 4.0 4.7 - - - +
310A SER* 1.3 72.6 + - - +
312A SER* 1.3 58.2 + - - +
314A LEU* 3.4 8.0 + - - +
315A LEU* 3.0 50.8 + - + +
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Residues in contact with SER 312 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A LEU* 5.5 6.7 - - - +
69A GLN* 3.5 25.9 - - - +
72A LYS* 3.3 25.0 + - - +
308A THR 3.1 16.1 + - - -
309A CYS 2.7 20.6 + - - -
311A LEU* 1.3 76.3 - - - +
313A PHE* 1.3 59.7 + - - +
315A LEU* 3.4 8.0 + - - +
316A CYS* 2.8 30.4 + - - +
358A LEU* 4.8 4.1 - - - +
359A VAL* 5.4 0.7 - - - -
362A ASP* 4.9 1.0 - - - +
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Residues in contact with PHE 313 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
309A CYS 2.8 21.8 + - - +
310A SER* 3.3 10.3 + - - +
312A SER* 1.3 72.1 + - - +
314A LEU* 1.3 60.9 + - - +
316A CYS* 3.5 4.0 + - - +
317A ALA* 2.8 34.7 + - + +
359A VAL* 3.7 28.0 - - + -
362A ASP* 3.3 29.2 - - - +
363A VAL* 5.2 7.2 - - + -
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Residues in contact with LEU 314 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310A SER 2.8 20.4 + - - +
311A LEU* 3.6 8.5 - - + +
313A PHE* 1.3 73.3 - - + +
315A LEU* 1.3 62.6 + - + +
317A ALA* 3.0 11.0 + - + +
318A ARG* 2.8 47.8 + - + +
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Residues in contact with LEU 315 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64A CYS* 4.7 4.3 - - + +
65A LYS* 3.7 48.3 - - + +
68A LEU* 5.5 1.8 - - + -
311A LEU* 3.0 41.9 + - + +
312A SER* 3.8 7.6 - - - +
314A LEU* 1.3 77.6 - - + +
316A CYS* 1.3 56.7 + - - +
318A ARG* 3.6 34.0 + - - +
319A SER* 3.1 23.4 + - - -
355A TYR* 5.3 1.0 - - - -
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Residues in contact with CYS 316 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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312A SER 2.8 18.5 + - - +
313A PHE 3.7 1.3 - - - +
315A LEU* 1.3 71.5 - - - +
317A ALA* 1.3 59.9 + - - +
319A SER* 2.5 31.7 + - - -
320A LEU* 2.8 23.3 + - - +
355A TYR* 3.7 29.6 - - + -
358A LEU* 5.5 2.9 - - + -
359A VAL* 3.1 47.8 - - + -
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Residues in contact with ALA 317 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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313A PHE* 2.8 27.4 + - + +
314A LEU* 3.0 15.0 + - + +
316A CYS* 1.3 71.6 - - - +
318A ARG* 1.3 56.8 + - - +
320A LEU* 3.5 9.9 + - - +
321A LEU* 2.8 30.4 + - - +
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Residues in contact with ARG 318 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61A ARG* 4.8 24.6 - - - +
314A LEU* 2.8 34.2 + - + +
315A LEU* 3.6 33.0 - - + +
317A ALA* 1.3 76.2 - - - +
319A SER* 1.3 59.8 + - - +
321A LEU* 3.4 15.0 + - + +
322A ARG* 3.2 39.3 + - - +
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Residues in contact with SER 319 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A PHE* 4.3 13.4 - - - -
315A LEU 3.1 11.5 + - - -
316A CYS* 2.5 23.2 + - - -
318A ARG* 1.3 73.8 - - - +
320A LEU* 1.3 63.8 + - - +
322A ARG* 3.5 11.4 + - - +
323A GLY* 3.5 13.0 + - - -
351A VAL* 5.9 1.0 - - - +
355A TYR* 3.4 47.7 - - - +
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Residues in contact with LEU 320 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316A CYS* 2.8 32.5 + - - +
317A ALA* 3.9 7.4 - - - +
319A SER* 1.3 73.5 + - - +
321A LEU* 1.3 59.1 + - - +
322A ARG 3.2 0.4 - - - -
323A GLY* 2.8 25.9 + - - +
324A PHE* 3.3 13.5 + - + -
351A VAL* 3.9 27.8 - - + -
352A ASN 6.0 0.2 - - - +
355A TYR* 5.7 5.6 - - + -
356A ILE* 5.6 14.6 - - + +
359A VAL* 4.7 11.7 - - + -
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Residues in contact with LEU 321 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317A ALA 2.8 22.3 + - - +
318A ARG* 3.4 16.6 - - + +
319A SER 3.4 0.2 - - - -
320A LEU* 1.3 73.6 - - - +
322A ARG* 1.3 69.4 + - + +
324A PHE* 3.6 11.7 + - - +
325A LEU* 3.2 34.6 + - + +
----------------------------------------------------------
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Residues in contact with ARG 322 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44A ARG* 5.4 10.4 - - - +
47A TYR* 5.1 14.5 - - - -
48A PHE* 3.7 31.3 - - + -
55A LYS* 6.2 0.4 - - - +
318A ARG* 3.2 28.5 + - - +
319A SER* 3.6 10.8 - - - +
320A LEU 3.2 0.4 - - - -
321A LEU* 1.3 80.4 - - + +
323A GLY* 1.3 66.1 + - - +
325A LEU* 3.3 20.9 + - - +
326A LEU* 3.6 10.6 + - - +
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Residues in contact with GLY 323 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A PHE* 5.0 6.0 - - - -
319A SER 3.5 7.2 + - - -
320A LEU* 2.8 13.8 + - - -
322A ARG* 1.3 79.5 - - - +
324A PHE* 1.3 59.5 + - - -
325A LEU 3.5 0.3 + - - -
326A LEU* 3.6 8.1 + - - +
327A GLN* 3.6 12.2 + - - +
350A PHE* 3.6 17.9 - - - -
351A VAL* 4.4 20.2 - - - -
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Residues in contact with PHE 324 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320A LEU* 3.3 14.1 + - + -
321A LEU* 3.6 10.3 + - - +
322A ARG 3.3 0.8 - - - -
323A GLY* 1.3 71.5 - - - +
325A LEU* 1.3 64.8 + - + +
327A GLN* 3.5 30.9 + - + +
328A ASN* 3.2 19.4 + - - +
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Residues in contact with LEU 325 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44A ARG* 3.9 27.1 - - - +
321A LEU* 3.2 39.9 - - + +
322A ARG* 3.3 15.4 + - - +
324A PHE* 1.3 75.3 - - + +
326A LEU* 1.3 61.1 + - - +
328A ASN* 2.8 27.1 + - + +
329A GLU* 3.1 18.4 + - - +
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Residues in contact with LEU 326 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45A LEU* 3.3 33.0 - - + -
49A PHE* 6.2 4.3 - - + -
322A ARG 3.6 6.6 + - - +
323A GLY* 3.6 9.9 + - - +
324A PHE 3.4 0.4 - - - -
325A LEU* 1.3 76.2 - - - +
327A GLN* 1.3 58.3 + - - +
329A GLU* 2.8 49.5 + - + +
330A PHE* 3.4 3.8 + - - -
331A VAL* 4.7 10.7 + - - +
350A PHE* 3.3 42.0 - - + -
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Residues in contact with GLN 327 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323A GLY 3.6 8.2 + - - +
324A PHE* 3.5 35.8 + - + +
325A LEU 3.3 0.2 - - - -
326A LEU* 1.3 79.3 - - - +
328A ASN* 1.3 59.5 + - - +
330A PHE* 3.3 32.9 + - - +
347A ARG* 3.8 44.4 + - - +
348A LEU* 5.6 2.8 + - - +
350A PHE* 3.6 24.2 - - + -
351A VAL* 5.0 7.5 - - - +
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Residues in contact with ASN 328 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324A PHE 3.2 11.7 + - - +
325A LEU* 2.8 19.3 + - + +
327A GLN* 1.3 71.8 - - - +
329A GLU* 1.3 58.7 + - - +
330A PHE* 3.2 26.5 - - - -
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Residues in contact with GLU 329 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A GLU* 5.0 2.6 - - - +
41A LEU* 3.5 39.3 - - + +
44A ARG* 5.8 6.9 + - - +
45A LEU* 4.1 12.1 - - - +
325A LEU* 3.1 12.5 + - - +
326A LEU* 2.8 40.1 + - + +
328A ASN* 1.3 76.3 - - - +
330A PHE* 1.3 70.6 + - - +
331A VAL 4.7 0.2 - - - +
332A GLY* 3.3 19.2 + - - +
333A PHE* 3.3 7.8 + - - +
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Residues in contact with PHE 330 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326A LEU 3.4 2.6 + - - -
327A GLN* 3.3 19.7 + - - +
328A ASN* 3.2 42.6 - - - -
329A GLU* 1.3 74.5 - - - +
331A VAL* 1.3 78.8 + - - +
333A PHE* 2.8 24.5 + + + +
334A MET* 5.1 0.7 - - - +
344A LEU* 5.3 11.4 - - + -
347A ARG* 4.8 18.2 - - - +
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Residues in contact with VAL 331 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A GLU* 4.4 7.0 - - - +
326A LEU* 4.7 12.2 + - - +
329A GLU* 3.5 1.4 - - - +
330A PHE* 1.3 77.6 - - - +
332A GLY* 1.3 52.7 + - - +
334A MET* 2.8 39.3 + - + -
335A TRP* 3.3 22.3 + - + +
342A ILE* 3.7 41.7 - - + -
344A LEU* 6.1 3.4 - - + -
----------------------------------------------------------
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Residues in contact with GLY 332 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A GLU* 4.2 21.7 + - - -
326A LEU* 6.3 0.2 - - - +
329A GLU* 3.3 18.0 + - - +
330A PHE 3.2 1.4 - - - -
331A VAL* 1.3 72.6 - - - +
333A PHE* 1.3 67.0 + - - +
335A TRP* 2.8 13.7 + - - -
336A ARG* 3.0 10.0 + - - +
----------------------------------------------------------
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Residues in contact with PHE 333 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
329A GLU 3.3 7.2 + - - +
330A PHE* 2.8 24.1 + + + -
332A GLY* 1.3 70.5 - - - +
334A MET* 1.3 64.8 + - + +
336A ARG* 2.8 37.5 + - + +
337A GLN 4.1 0.3 + - - -
338A ARG* 4.5 23.9 + - + -
----------------------------------------------------------
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Residues in contact with MET 334 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
330A PHE 3.7 1.3 + - - +
331A VAL* 2.8 23.8 + - + -
333A PHE* 1.3 79.9 - - + +
335A TRP* 1.3 69.9 + - - +
337A GLN* 3.0 17.2 + - - +
338A ARG* 3.4 28.6 + - + -
339A GLY* 3.8 10.1 + - - +
340A ARG 5.5 0.9 - - - +
341A VAL* 5.3 3.8 - - - -
342A ILE* 3.9 53.4 - - + +
344A LEU* 4.6 9.9 - - + -
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Residues in contact with TRP 335 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A GLU* 3.7 55.3 + - + -
331A VAL* 3.3 22.6 + - + +
332A GLY* 2.8 16.2 + - - -
334A MET* 1.3 77.2 - - - +
336A ARG* 1.3 66.9 + - - +
337A GLN* 3.2 24.8 + - - +
340A ARG* 6.0 12.4 - - - +
342A ILE* 5.3 5.4 - - + +
----------------------------------------------------------
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Residues in contact with ARG 336 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332A GLY 3.0 5.8 + - - +
333A PHE* 2.8 28.2 + - + -
335A TRP* 1.3 78.1 - - - +
337A GLN* 1.3 59.0 + - - +
338A ARG* 3.8 2.5 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il