Contacts of the helix formed by residues 213 - 256 (chain Z) in PDB entry 5WTI
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ARG 213 (chain Z).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
191Z THR* 3.1 24.9 + - + -
192Z ASP* 2.4 29.1 + - - -
203Z TRP* 3.6 37.4 - - - +
204Z MET* 2.6 30.3 + - - +
206Z LYS* 3.5 25.8 - - + +
210Z GLN* 4.0 13.0 - - - +
212Z VAL* 1.3 78.1 - - - +
214Z ARG* 1.3 60.6 + - - +
215Z LEU* 3.2 7.2 - - + +
216Z ASP* 2.9 39.1 + - - +
217Z LYS 3.4 3.6 + - - -
424Z ARG* 5.9 2.0 - - - +
436Z GLU* 3.4 22.3 + - - +
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Residues in contact with ARG 214 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5H G 3.7 15.0 - - - +
6H G 3.4 62.8 + - - +
7H A 5.1 6.9 + - - +
210Z GLN* 4.7 3.1 - - - +
212Z VAL 3.9 3.1 + - - +
213Z ARG* 1.3 72.1 - - - +
215Z LEU* 1.3 64.1 + - - +
217Z LYS* 3.4 20.5 + - + +
218Z ASP* 3.3 17.5 + - - +
397Z SER* 3.8 25.5 + - - +
398Z ASN 3.4 19.0 + - - +
399Z LEU* 3.8 29.3 + - - +
400Z ASN* 3.9 28.8 + - - +
401Z LYS* 4.7 6.3 - - - +
423Z ASP* 4.5 11.3 + - - -
424Z ARG* 5.0 4.0 - - - +
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Residues in contact with LEU 215 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23Z THR* 4.4 12.1 - - + -
26Z VAL* 3.8 29.6 - - + -
27Z LEU* 3.8 26.5 - - + +
191Z THR* 4.3 15.3 - - + -
203Z TRP* 4.6 2.7 - - + -
213Z ARG* 3.2 4.3 - - + +
214Z ARG* 1.3 74.4 - - - +
216Z ASP* 1.3 65.2 + - - +
218Z ASP* 3.3 7.3 + - + +
219Z MET* 3.0 35.7 + - - +
389Z VAL* 4.3 17.0 - - + -
400Z ASN* 4.1 15.6 - - - +
426Z ILE* 4.5 17.5 - - + -
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Residues in contact with ASP 216 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34Z TYR* 2.6 27.4 + - - +
121Z LEU* 4.3 5.1 - - + +
189Z PRO* 3.9 9.7 - - + +
190Z PHE 3.1 14.2 + - - -
191Z THR* 2.4 35.7 + - - +
212Z VAL* 4.5 8.7 - - + -
213Z ARG* 2.9 26.6 + - - +
215Z LEU* 1.3 76.3 - - - +
217Z LYS* 1.3 57.8 + - - +
219Z MET* 3.2 15.4 + - - +
220Z PHE* 2.9 30.5 + - - +
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Residues in contact with LYS 217 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7H A 4.5 7.6 + - - +
8H T 5.0 5.3 + - - +
117Z SER* 3.9 3.3 + - - +
118Z ASN* 3.6 22.4 + - - -
121Z LEU* 4.0 15.3 - - + -
122Z TYR* 3.3 28.7 + - + +
212Z VAL* 3.7 23.1 - - + -
213Z ARG 3.4 2.2 + - - +
214Z ARG* 3.6 23.2 - - + +
215Z LEU 3.3 0.6 - - - -
216Z ASP* 1.3 76.5 - - - +
218Z ASP* 1.3 57.7 + - - +
220Z PHE* 3.3 1.4 + - - +
221Z ILE* 2.8 39.8 + - + +
397Z SER 5.0 1.2 + - - -
398Z ASN* 2.6 38.8 + - - +
399Z LEU* 3.7 9.6 - - + -
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Residues in contact with ASP 218 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27Z LEU* 3.3 18.2 - - + +
214Z ARG 3.3 10.8 + - - +
215Z LEU* 3.6 11.5 - - + +
216Z ASP 3.2 0.4 - - - -
217Z LYS* 1.3 78.5 - - - +
219Z MET* 1.3 62.1 + - - +
221Z ILE* 3.5 5.4 + - - +
222Z GLN* 3.0 43.0 + - - +
389Z VAL* 3.9 1.9 - - - +
390Z ARG* 3.2 44.0 + - - +
399Z LEU* 4.0 17.8 - - + +
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Residues in contact with MET 219 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26Z VAL 3.6 15.0 - - - +
27Z LEU* 3.7 25.4 - - + +
30Z GLY* 3.6 20.6 - - - -
31Z ILE* 3.5 19.5 - - + +
34Z TYR* 3.5 21.3 - - + -
190Z PHE* 3.6 15.3 - - + -
191Z THR* 4.3 4.5 - - + -
215Z LEU* 3.0 17.3 + - - +
216Z ASP* 3.2 41.1 - - - +
218Z ASP* 1.3 76.9 - - - +
220Z PHE* 1.3 56.3 + - - +
222Z GLN 3.4 0.3 + - - -
223Z ALA* 2.9 29.1 + - - +
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Residues in contact with PHE 220 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34Z TYR* 3.5 37.2 - + + -
37Z ILE* 6.2 1.8 - - + -
38Z LEU* 4.9 11.9 - - + -
102Z LEU* 4.1 29.2 - - + -
117Z SER* 3.3 26.9 - - - +
121Z LEU* 3.9 33.9 - - + -
124Z LEU* 5.1 2.0 - - + -
187Z PHE* 3.7 27.8 - + - -
216Z ASP 2.9 16.7 + - - +
217Z LYS 3.9 0.2 - - - +
219Z MET* 1.3 73.0 - - - +
221Z ILE* 1.3 65.1 + - - +
223Z ALA* 3.3 3.0 + - + +
224Z LEU* 3.0 45.8 + - + +
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Residues in contact with ILE 221 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19E G 5.4 1.3 - - - +
20E G 5.9 0.4 - - - +
113Z ALA* 3.3 15.9 - - + +
114Z ASN* 3.9 27.8 - - + +
117Z SER* 3.5 24.7 - - - +
118Z ASN* 5.4 5.8 - - - +
217Z LYS* 2.8 23.7 + - + +
218Z ASP* 3.7 5.4 - - - +
219Z MET 3.3 0.2 - - - -
220Z PHE* 1.3 76.9 - - - +
222Z GLN* 1.3 58.2 + - - +
224Z LEU 3.2 2.3 + - - -
225Z GLU* 2.9 43.6 + - - +
390Z ARG* 4.2 10.1 - - - +
398Z ASN* 6.0 2.2 - - + -
399Z LEU* 4.1 30.7 - - + -
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Residues in contact with GLN 222 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27Z LEU* 4.1 6.7 - - - +
31Z ILE* 3.8 19.5 - - + +
218Z ASP* 3.0 38.8 + - - +
221Z ILE* 1.3 72.6 - - + +
223Z ALA* 1.3 65.7 + - - +
225Z GLU* 3.3 11.5 + - - +
226Z ARG* 3.0 27.7 + - - +
387Z LEU* 3.5 28.2 - - + +
388Z TRP 3.0 28.4 + - - +
390Z ARG* 3.7 34.8 + - - +
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Residues in contact with ALA 223 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31Z ILE* 4.0 11.6 - - + +
34Z TYR* 4.0 21.3 - - + -
35Z MET* 3.9 21.3 - - + -
38Z LEU* 4.4 8.5 - - + -
219Z MET 2.9 19.1 + - - +
220Z PHE* 3.7 4.5 - - + +
221Z ILE 3.3 0.4 - - - -
222Z GLN* 1.3 77.0 - - - +
224Z LEU* 1.3 61.9 + - - +
226Z ARG* 3.2 4.7 + - - +
227Z PHE* 3.1 29.1 + - - -
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Residues in contact with LEU 224 (chain Z).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38Z LEU* 4.1 20.9 - - + -
102Z LEU* 3.7 33.2 - - + +
103Z VAL* 4.3 10.3 - - + -
113Z ALA* 3.7 17.7 - - + +
116Z LEU* 4.0 10.1 - - + -
117Z SER* 3.8 26.5 - - - +
220Z PHE* 3.0 38.0 + - + +
221Z ILE 3.6 6.5 - - - +
223Z ALA* 1.3 72.6 - - - +
225Z GLU* 1.3 61.7 + - - +
227Z PHE* 3.8 3.0 - - - +
228Z LEU* 2.9 38.8 + - + +
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Residues in contact with GLU 225 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105B G 5.7 0.7 + - - -
106B G 5.3 1.0 + - - -
17E C 3.9 20.4 + - + +
18E C 3.3 38.0 + - - +
19E G 4.5 0.9 + - - -
113Z ALA* 3.5 15.0 - - + +
114Z ASN* 5.5 0.3 + - - +
221Z ILE* 2.9 28.9 + - - +
222Z GLN* 3.5 12.9 - - - +
223Z ALA 3.3 0.2 - - - -
224Z LEU* 1.3 76.5 - - - +
226Z ARG* 1.3 64.2 + - + +
228Z LEU* 4.7 0.2 - - - -
229Z SER* 3.5 22.0 + - - -
390Z ARG* 2.9 41.3 + - - -
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Residues in contact with ARG 226 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106B G 4.0 22.8 + - - +
107B G 2.9 50.3 + - - -
35Z MET* 3.9 30.1 - - + +
222Z GLN 3.0 22.4 + - - +
223Z ALA* 3.2 7.4 + - - +
225Z GLU* 1.3 79.1 - - - +
227Z PHE* 1.3 57.7 + - - +
229Z SER* 4.1 3.1 - - - -
230Z TRP* 3.0 37.1 + - - +
377Z PHE* 6.0 0.8 - - - -
378Z THR* 2.9 34.8 + - - +
379Z LEU 4.4 0.4 - - - -
380Z ALA* 4.1 14.6 - - - +
385Z HIS* 5.7 1.0 + - - +
387Z LEU* 4.4 15.2 - - + +
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Residues in contact with PHE 227 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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35Z MET* 3.2 47.6 - - + -
38Z LEU* 3.5 27.6 - - + -
39Z LYS* 3.6 11.2 - - - -
42Z ARG* 4.7 0.7 - - - -
99Z TYR* 3.4 31.4 - + - -
103Z VAL* 3.8 15.9 - - + -
223Z ALA 3.1 23.6 + - - +
224Z LEU* 3.1 6.2 + - - +
226Z ARG* 1.3 77.2 - - - +
228Z LEU* 1.3 60.8 + - - +
230Z TRP* 3.9 21.8 - + - -
231Z GLU* 2.8 35.0 + - - +
377Z PHE* 3.6 24.0 - + - -
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Residues in contact with LEU 228 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17E C 3.7 19.1 - - - +
18E C 3.6 23.8 - - - +
102Z LEU 4.4 0.4 - - - +
103Z VAL* 3.9 11.7 - - + -
104Z PRO* 3.7 28.9 - - + -
105Z SER* 3.2 28.9 + - - +
111Z GLY* 3.6 20.0 - - - +
112Z GLU 4.2 0.7 - - - -
113Z ALA* 3.7 16.6 - - + +
116Z LEU* 4.2 5.4 - - + -
224Z LEU* 2.9 23.1 + - + +
225Z GLU 4.3 0.9 - - - +
227Z PHE* 1.3 76.2 - - - +
229Z SER* 1.3 61.4 + - - +
232Z SER* 3.2 21.1 + - - -
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Residues in contact with SER 229 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106B G 3.8 6.0 + - - -
107B G 3.7 10.6 + - - -
16E C 2.6 28.5 + - - -
17E C 3.2 29.1 + - - -
225Z GLU 3.5 13.3 + - - -
226Z ARG* 4.1 2.5 - - - -
227Z PHE 3.3 0.4 - - - -
228Z LEU* 1.3 79.3 - - - +
230Z TRP* 1.3 62.4 + - - +
232Z SER* 3.4 2.6 + - - -
233Z TRP* 3.2 27.1 + - - -
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Residues in contact with TRP 230 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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107B G 5.5 4.5 - - - +
108B A 5.2 4.7 - - - -
42Z ARG* 3.4 44.4 - - - -
46Z ILE* 3.5 30.3 - - + -
226Z ARG* 3.0 28.0 + - - +
227Z PHE* 3.9 25.8 - + - -
229Z SER* 1.3 78.4 + - - +
231Z GLU* 1.3 78.6 + - + +
233Z TRP* 3.4 5.7 + - - +
234Z ASN* 3.0 40.0 + - - -
374Z GLN* 4.1 4.9 - - - -
375Z ALA* 2.8 29.9 + - + -
376Z THR 3.4 20.9 + - - -
377Z PHE* 3.8 20.0 - + + -
378Z THR 5.7 0.2 - - - -
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Residues in contact with GLU 231 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42Z ARG* 3.2 23.8 + - - +
96Z ARG* 5.3 0.3 + - - -
99Z TYR* 2.4 39.7 + - - +
103Z VAL* 3.9 7.2 - - + -
105Z SER* 4.0 5.6 - - - -
106Z SER* 3.7 30.3 - - - +
227Z PHE 2.8 21.2 + - - +
230Z TRP* 1.3 85.5 - - + +
232Z SER* 1.3 65.6 + - - +
234Z ASN* 3.3 22.9 + - - +
235Z LEU* 3.3 26.7 + - - +
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Residues in contact with SER 232 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16E C 3.3 28.3 - - - -
17E C 2.3 26.3 + - - -
105Z SER* 3.5 12.4 + - - -
228Z LEU 3.2 8.0 + - - -
229Z SER 3.7 2.2 - - - -
230Z TRP 3.4 0.2 - - - -
231Z GLU* 1.3 76.1 - - - +
233Z TRP* 1.3 57.8 + - - +
235Z LEU* 3.4 8.6 + - - +
236Z LYS* 3.0 31.2 + - - +
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Residues in contact with TRP 233 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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107B G 3.3 13.2 - - - +
108B A 3.4 33.0 - + - +
109B G 3.4 48.7 - - - -
14E T 4.8 1.3 - - - -
15E C 2.9 47.7 + - - -
16E C 3.1 17.8 + - - -
229Z SER* 3.2 26.2 + - - +
230Z TRP* 3.8 6.7 - - - +
231Z GLU 3.2 0.2 - - - -
232Z SER* 1.3 75.1 - - - +
234Z ASN* 1.3 56.4 + - - +
236Z LYS* 3.5 37.6 - - + +
237Z VAL* 2.6 42.7 + - + +
375Z ALA* 3.9 4.9 - - + -
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Residues in contact with ASN 234 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42Z ARG* 3.7 5.1 - - - +
230Z TRP* 3.0 43.3 + - - +
231Z GLU* 3.3 28.8 + - - +
233Z TRP* 1.3 77.6 - - - +
235Z LEU* 1.3 59.6 + - + +
237Z VAL* 3.6 2.1 + - - +
238Z LYS* 3.1 26.3 + - - +
373Z GLN 4.5 4.3 - - - +
374Z GLN* 3.7 18.4 + - + +
375Z ALA* 2.8 38.6 + - - +
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Residues in contact with LEU 235 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105Z SER 3.4 24.7 - - - +
106Z SER* 4.5 11.4 - - - +
108Z GLU* 3.6 34.1 - - + +
231Z GLU* 3.3 10.0 + - - +
232Z SER* 3.7 9.0 - - - +
233Z TRP 3.2 0.4 - - - -
234Z ASN* 1.3 79.4 - - + +
236Z LYS* 1.3 60.8 + - + +
238Z LYS* 3.3 18.1 + - + +
239Z GLU* 2.9 41.7 + - + +
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Residues in contact with LYS 236 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15E C 3.5 19.5 + - - -
16E C 3.2 38.9 + - - +
232Z SER* 3.0 19.8 + - - +
233Z TRP* 3.1 44.4 + - + +
235Z LEU* 1.3 75.9 - - + +
237Z VAL* 1.3 63.6 + - - +
239Z GLU* 4.0 9.6 - - - +
240Z GLU* 3.0 25.8 + - - +
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Residues in contact with VAL 237 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109B G 3.7 37.7 - - - +
233Z TRP* 2.6 26.7 + - + +
234Z ASN 3.9 4.5 - - - +
236Z LYS* 1.3 72.2 - - - +
238Z LYS* 1.3 61.2 + - - +
240Z GLU* 3.4 6.8 + - - +
241Z TYR* 3.0 22.2 + - - +
372Z LYS* 3.5 32.1 - - + +
373Z GLN 3.6 18.8 - - - +
374Z GLN 3.8 2.7 - - - +
375Z ALA* 3.9 14.6 - - + +
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Residues in contact with LYS 238 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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234Z ASN 3.1 19.0 + - - +
235Z LEU* 3.6 21.5 - - + +
236Z LYS 3.3 0.2 - - - -
237Z VAL* 1.3 77.2 - - - +
239Z GLU* 1.3 59.9 + - + +
241Z TYR* 3.0 8.1 + - + +
242Z GLU* 2.9 55.1 + - + +
373Z GLN* 4.6 9.4 - - - +
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Residues in contact with GLU 239 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108Z GLU* 4.6 12.0 - - - +
235Z LEU* 2.9 30.1 + - + +
236Z LYS* 4.0 8.9 - - - +
238Z LYS* 1.3 75.7 - - + +
240Z GLU* 1.3 58.3 + - - +
242Z GLU* 3.3 14.6 + - - +
243Z LYS* 2.8 30.5 + - - +
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Residues in contact with GLU 240 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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109B G 6.1 0.2 - - - +
110B A 5.5 13.9 - - - +
236Z LYS 3.0 19.4 + - - +
237Z VAL* 3.7 6.7 - - - +
239Z GLU* 1.3 75.3 - - - +
241Z TYR* 1.3 59.0 + - - +
243Z LYS* 3.3 31.7 + - - +
244Z VAL* 3.0 40.1 + - + +
367Z LYS* 4.4 13.3 + - - +
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Residues in contact with TYR 241 (chain Z).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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237Z VAL 3.0 18.1 + - - +
238Z LYS* 3.0 6.9 + - + +
240Z GLU* 1.3 77.2 - - - +
242Z GLU* 1.3 68.4 + - + +
244Z VAL* 3.3 9.6 + - + +
245Z GLU* 3.1 52.7 + - + +
367Z LYS 4.8 3.6 - - - -
368Z LYS* 3.8 22.9 + - + -
371Z ALA* 3.3 36.8 - - + +
372Z LYS 4.0 18.4 - - - +
373Z GLN* 5.5 6.3 - - + -
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Residues in contact with GLU 242 (chain Z).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
238Z LYS* 2.9 44.1 + - + +
239Z GLU* 3.8 14.2 - - - +
241Z TYR* 1.3 78.3 - - + +
243Z LYS* 1.3 65.8 + - - +
245Z GLU* 3.2 8.2 + - - +
246Z LYS* 3.1 23.7 + - - +
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Residues in contact with LYS 243 (chain Z).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
239Z GLU 2.8 18.1 + - - +
240Z GLU* 3.4 31.1 + - - +
242Z GLU* 1.3 76.6 - - - +
244Z VAL* 1.3 65.4 + - + +
246Z LYS* 3.4 12.3 + - - +
247Z GLU* 3.0 59.4 + - + +
----------------------------------------------------------
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Residues in contact with VAL 244 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240Z GLU* 3.0 28.5 + - + +
241Z TYR* 3.7 14.8 - - + +
242Z GLU 3.2 0.2 - - - -
243Z LYS* 1.3 81.6 - - + +
245Z GLU* 1.3 54.1 + - - +
247Z GLU* 3.2 8.4 + - - +
248Z HIS* 2.7 33.8 + - - +
364Z ILE* 4.1 19.3 - - + +
367Z LYS* 3.5 42.0 - - + +
368Z LYS* 4.1 20.0 - - + -
----------------------------------------------------------
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Residues in contact with GLU 245 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
241Z TYR* 3.1 44.4 + - + +
242Z GLU* 3.2 10.5 + - - +
244Z VAL* 1.3 76.2 - - - +
246Z LYS* 1.3 62.1 + - - +
248Z HIS* 3.5 6.9 + - - +
249Z LYS* 3.2 21.5 + - - +
368Z LYS* 2.3 41.3 + - + +
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Residues in contact with LYS 246 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
242Z GLU 3.1 16.9 + - - +
243Z LYS* 3.8 10.5 - - - +
245Z GLU* 1.3 77.3 - - - +
247Z GLU* 1.3 82.3 + - - +
249Z LYS* 3.2 8.3 + - + +
250Z THR* 3.1 31.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 247 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
243Z LYS* 3.0 50.2 + - - +
244Z VAL* 3.9 4.9 - - - +
246Z LYS* 1.3 93.3 + - - +
248Z HIS* 1.3 58.4 + - - +
250Z THR* 4.3 6.7 - - - +
251Z LEU* 3.0 34.7 + - + +
364Z ILE* 3.9 22.9 - - + +
1042Z LYS* 5.8 4.5 + - - -
----------------------------------------------------------
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Residues in contact with HIS 248 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
244Z VAL 2.7 21.0 + - - +
245Z GLU 3.9 5.1 + - - +
246Z LYS 3.2 0.2 - - - -
247Z GLU* 1.3 73.0 - - - +
249Z LYS* 1.3 63.1 + - - +
251Z LEU* 4.5 2.2 - - - -
252Z GLU* 2.9 52.1 + - - +
361Z PHE* 3.5 27.8 - + - -
364Z ILE* 3.6 14.6 - - + +
365Z ASP* 3.6 29.1 + - - -
368Z LYS* 3.7 38.0 - - + +
----------------------------------------------------------
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Residues in contact with LYS 249 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
245Z GLU 3.2 13.4 + - - +
246Z LYS* 3.2 11.7 + - + +
248Z HIS* 1.3 80.6 + - - +
250Z THR* 1.3 51.8 + - - +
252Z GLU* 3.2 6.3 + - - +
253Z GLU* 2.7 37.7 + - - +
----------------------------------------------------------
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Residues in contact with THR 250 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
246Z LYS* 3.1 20.2 + - - +
247Z GLU* 4.3 6.1 - - - -
249Z LYS* 1.3 77.5 - - - +
251Z LEU* 1.3 68.2 + - + +
253Z GLU* 3.2 37.8 + - + +
254Z ARG* 3.4 9.7 + - + +
1042Z LYS* 5.8 6.7 - - + -
----------------------------------------------------------
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Residues in contact with LEU 251 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247Z GLU* 3.0 22.7 + - + +
248Z HIS* 4.1 0.9 - - - +
249Z LYS 3.3 0.2 - - - -
250Z THR* 1.3 79.7 - - + +
252Z GLU* 1.3 59.8 + - - +
254Z ARG* 4.3 1.4 - - - +
255Z ILE* 3.3 23.9 + - - +
357Z LEU* 4.2 26.6 - - + +
360Z THR* 3.4 27.1 - - - +
361Z PHE* 3.6 30.1 - - + -
364Z ILE* 3.6 28.0 - - + -
1042Z LYS* 4.4 22.7 - - - -
----------------------------------------------------------
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Residues in contact with GLU 252 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
248Z HIS* 2.9 39.8 + - - +
249Z LYS* 3.7 4.8 - - - +
251Z LEU* 1.3 74.8 - - - +
253Z GLU* 1.3 63.0 + - - +
254Z ARG 3.1 4.3 + - - -
255Z ILE* 3.2 11.3 + - + -
256Z LYS* 3.0 57.2 + - + +
262Z PHE* 5.1 2.4 - - + -
361Z PHE* 3.5 24.9 - - + -
365Z ASP* 5.5 0.2 - - - +
----------------------------------------------------------
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Residues in contact with GLU 253 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
249Z LYS 2.7 17.9 + - - +
250Z THR* 3.2 35.6 + - + +
252Z GLU* 1.3 73.0 - - - +
254Z ARG* 1.3 54.6 + - + +
256Z LYS* 4.4 3.6 - - - +
257Z GLU* 2.5 23.5 - - - +
----------------------------------------------------------
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Residues in contact with ARG 254 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
250Z THR* 3.4 10.8 + - + +
251Z LEU* 4.8 1.8 - - + +
252Z GLU 3.1 0.2 - - - -
253Z GLU* 1.3 80.9 + - + +
255Z ILE* 1.3 62.3 + - - +
256Z LYS 3.2 1.6 - - - -
257Z GLU* 3.1 55.3 + - - +
353Z GLU* 5.8 4.7 - - - +
354Z TYR* 4.9 4.3 - - - -
357Z LEU* 4.9 17.9 - - + +
----------------------------------------------------------
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Residues in contact with ILE 255 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
251Z LEU 3.3 16.1 + - - +
252Z GLU* 3.2 21.5 + - + +
254Z ARG* 1.3 75.4 - - - +
256Z LYS* 1.3 64.5 + - + +
257Z GLU 3.4 5.6 + - - -
258Z ASP 3.9 4.7 - - - +
262Z PHE* 4.0 17.9 - - + +
354Z TYR* 3.1 45.7 + - + +
357Z LEU* 3.8 14.6 - - + +
358Z TYR* 3.3 48.2 - - + -
361Z PHE* 4.0 17.0 - - + -
----------------------------------------------------------
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Residues in contact with LYS 256 (chain Z).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
252Z GLU* 3.0 52.8 + - + +
253Z GLU* 4.8 2.9 - - - +
254Z ARG 3.2 2.8 - - - -
255Z ILE* 1.3 79.9 - - + +
257Z GLU* 1.3 68.5 + - - +
258Z ASP 5.1 0.7 - - - -
259Z ILE* 3.2 27.6 - - + +
262Z PHE* 3.2 38.2 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il