Contacts of the helix formed by residues 777 - 804 (chain Z) in PDB entry 5WTI


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ALA 777 (chain Z).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     61B    A      3.1    22.4    +      -       -      +
     62B    A      3.2     8.9    +      -       -      -
    726Z  ARG*     5.5     5.4    -      -       -      +
    751Z  ARG*     3.0    23.5    +      -       -      +
    754Z  LEU*     5.5     1.6    -      -       +      -
    776Z  PHE*     1.3    89.3    -      -       +      +
    778Z  ILE*     1.3    67.1    +      -       -      +
    779Z  ASP      3.4     2.5    -      -       -      -
    780Z  GLN*     3.3    22.5    +      -       +      +
    781Z  LEU*     3.1    11.6    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ILE 778 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62B    A      2.9    21.6    +      -       -      +
     63B    C      4.2     8.1    -      -       -      +
    495Z  ARG*     3.5    49.6    -      -       +      +
    775Z  ARG*     3.7    61.9    -      -       +      +
    776Z  PHE      4.2     3.6    -      -       -      -
    777Z  ALA*     1.3    71.2    -      -       -      +
    779Z  ASP*     1.3    52.4    +      -       -      +
    781Z  LEU*     2.9     8.9    +      -       +      +
    782Z  ASN*     2.7    45.7    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ASP 779 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     49B    A      4.4    17.6    +      -       -      +
     62B    A      4.6     1.2    +      -       -      -
    495Z  ARG*     2.9    31.9    +      -       -      -
    777Z  ALA      3.4     0.4    -      -       -      -
    778Z  ILE*     1.3    76.2    -      -       -      +
    780Z  GLN*     1.3    56.7    +      -       -      +
    782Z  ASN*     3.7    11.8    +      -       -      +
    783Z  HIS*     3.0    29.3    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with GLN 780 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     48B    C      2.5    45.0    +      -       -      +
    726Z  ARG*     4.8    11.8    -      -       -      +
    729Z  LEU*     4.8     2.2    -      -       -      +
    747Z  ILE*     4.1    14.4    +      -       +      +
    750Z  THR*     4.0    15.0    -      -       -      +
    751Z  ARG*     3.1    38.1    -      -       +      +
    754Z  LEU*     4.0    11.4    -      -       -      +
    777Z  ALA*     3.3    20.9    +      -       +      +
    778Z  ILE      3.2     0.8    -      -       -      -
    779Z  ASP*     1.3    78.1    -      -       -      +
    781Z  LEU*     1.3    58.5    +      -       -      +
    783Z  HIS*     3.9     4.8    -      -       -      +
    784Z  LEU*     3.0    26.3    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 781 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     10E    C      3.8    38.8    -      -       +      +
     11E    T      4.3     6.7    -      -       -      +
    751Z  ARG*     3.9    35.9    -      -       -      +
    775Z  ARG*     5.1    13.5    -      -       -      +
    776Z  PHE      5.2     1.3    -      -       -      +
    777Z  ALA      3.1    12.1    +      -       -      +
    778Z  ILE*     2.9     9.9    +      -       -      +
    780Z  GLN*     1.3    75.0    -      -       -      +
    782Z  ASN*     1.3    66.3    +      -       -      +
    784Z  LEU*     3.7    13.6    -      -       +      +
    785Z  ASN*     2.9    47.1    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ASN 782 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    491Z  ASP*     4.0    30.8    +      -       -      +
    495Z  ARG*     5.1     1.2    -      -       -      +
    775Z  ARG*     4.7     5.9    +      -       -      -
    778Z  ILE*     2.7    37.3    +      -       -      +
    779Z  ASP*     3.7    14.6    +      -       -      +
    781Z  LEU*     1.3    73.9    -      -       -      +
    783Z  HIS*     1.3    56.9    +      -       -      +
    785Z  ASN*     3.2     9.4    +      -       -      +
    786Z  ALA*     2.9    29.8    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with HIS 783 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45B    C      2.6    37.7    +      -       -      +
     46B    U      3.2    40.2    +      -       -      -
     48B    C      3.0    43.9    +      -       -      +
     49B    A      4.8     7.4    +      -       -      +
    747Z  ILE*     3.6    25.9    -      -       +      +
    779Z  ASP      3.0    17.9    +      -       -      +
    780Z  GLN*     3.9     4.7    -      -       -      +
    781Z  LEU      3.3     0.2    -      -       -      -
    782Z  ASN*     1.3    76.4    -      -       -      +
    784Z  LEU*     1.3    57.3    +      -       -      +
    786Z  ALA*     3.7     0.4    -      -       -      +
    787Z  LEU*     2.9    30.4    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 784 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    744Z  ILE*     3.7    28.8    -      -       +      +
    747Z  ILE*     4.0    22.0    -      -       +      +
    748Z  ASP*     3.8    35.0    -      -       +      +
    751Z  ARG*     4.5    16.2    -      -       -      -
    780Z  GLN      3.0    18.0    +      -       -      +
    781Z  LEU*     3.7    14.6    -      -       +      +
    783Z  HIS*     1.3    80.4    -      -       -      +
    785Z  ASN*     1.3    65.1    +      -       -      +
    787Z  LEU*     3.6     7.6    +      -       -      +
    788Z  LYS*     3.3    21.0    +      -       +      +
    849Z  LYS*     6.0     0.9    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ASN 785 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     11E    T      3.2    39.3    +      -       -      +
     12E    T      4.6     9.7    +      -       -      -
    781Z  LEU*     2.9    35.5    +      -       -      +
    782Z  ASN*     3.7     8.4    +      -       -      +
    784Z  LEU*     1.3    78.7    -      -       -      +
    786Z  ALA*     1.3    59.8    +      -       -      +
    788Z  LYS*     3.2     6.9    +      -       -      +
    789Z  GLU*     2.9    30.0    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ALA 786 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     44B    G      3.2    39.7    +      -       -      +
     45B    C      3.8     6.3    -      -       -      +
    782Z  ASN      2.9    17.0    +      -       -      +
    783Z  HIS      3.2     3.6    +      -       -      +
    785Z  ASN*     1.3    75.0    -      -       -      +
    787Z  LEU*     1.3    57.8    +      -       -      +
    789Z  GLU*     3.4    12.2    +      -       -      +
    790Z  ASP*     2.9    30.8    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 787 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45B    C      3.5    38.3    -      -       -      +
     46B    U      3.9     2.7    -      -       -      +
    739Z  ILE*     4.2    20.6    -      -       +      -
    743Z  ASN*     3.5    39.7    -      -       +      +
    744Z  ILE*     3.8    23.6    -      -       +      +
    747Z  ILE*     3.9    16.6    -      -       +      -
    783Z  HIS*     2.9    18.7    +      -       +      +
    784Z  LEU*     3.9     5.2    -      -       -      +
    786Z  ALA*     1.3    77.3    -      -       -      +
    788Z  LYS*     1.3    57.1    +      -       -      +
    790Z  ASP      3.4     0.7    +      -       -      -
    791Z  ARG*     2.9    26.5    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LYS 788 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12E    T      4.2    15.3    -      -       -      +
    741Z  LEU*     4.5     0.6    -      -       -      +
    744Z  ILE*     3.7    23.8    -      -       +      -
    784Z  LEU*     3.3    13.8    +      -       +      +
    785Z  ASN*     3.2    11.2    +      -       -      +
    787Z  LEU*     1.3    76.8    -      -       -      +
    789Z  GLU*     1.3    66.0    +      -       -      +
    791Z  ARG*     3.4    32.4    +      -       -      +
    792Z  LEU*     3.2    50.9    +      -       +      +
    849Z  LYS*     3.4    22.8    +      -       -      +
    850Z  TRP      3.5     7.6    +      -       -      -
    851Z  SER*     3.2    32.1    -      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with GLU 789 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     44B    G      4.9     5.2    +      -       -      -
    104B    G      5.0     2.3    +      -       -      +
    785Z  ASN      2.9    16.3    +      -       -      +
    786Z  ALA*     3.7    11.4    -      -       -      +
    788Z  LYS*     1.3    77.2    -      -       -      +
    790Z  ASP*     1.3    61.2    +      -       -      +
    791Z  ARG      3.4     0.2    +      -       -      -
    792Z  LEU*     3.4     7.2    +      -       -      +
    793Z  LYS*     3.1    49.8    +      -       +      +
    858Z  GLN*     5.3     2.9    +      -       -      +
   1201Z   MG      2.3    30.4    -      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ASP 790 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     44B    G      2.9    29.5    +      -       -      +
     45B    C      2.8    39.4    +      -       -      +
    101B    A      4.0     7.6    +      -       -      +
    739Z  ILE*     3.9     2.8    -      -       -      +
    786Z  ALA      2.9    17.5    +      -       -      +
    787Z  LEU      3.8     4.3    -      -       -      +
    789Z  GLU*     1.3    78.1    -      -       -      +
    791Z  ARG*     1.3    62.3    +      -       -      +
    793Z  LYS*     4.0     8.0    -      -       -      +
    794Z  LYS*     3.1    50.1    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ARG 791 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    576Z  GLY      5.3     3.4    +      -       -      -
    577Z  GLN      5.4     1.4    +      -       -      -
    579Z  GLN      5.2     2.0    +      -       -      -
    580Z  ALA*     4.7     4.6    +      -       -      +
    620Z  LEU*     3.8    14.6    -      -       +      +
    623Z  GLU*     2.9    28.3    +      -       -      -
    739Z  ILE*     3.2    39.1    +      -       +      +
    740Z  SER*     4.0     6.2    -      -       -      +
    741Z  LEU*     3.5    42.6    -      -       -      +
    744Z  ILE*     4.3     7.0    -      -       -      -
    787Z  LEU*     2.9    19.1    +      -       +      +
    788Z  LYS*     3.7    22.5    -      -       -      +
    789Z  GLU      3.2     0.4    -      -       -      -
    790Z  ASP*     1.3    78.0    -      -       -      +
    792Z  LEU*     1.3    57.4    +      -       -      +
    794Z  LYS*     3.9     1.7    -      -       -      +
    795Z  MET*     2.9    51.8    +      -       +      +
    850Z  TRP*     5.3     8.5    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 792 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    788Z  LYS*     3.2    53.4    +      -       +      +
    789Z  GLU*     3.4     4.5    +      -       -      +
    790Z  ASP      3.4     0.4    -      -       -      -
    791Z  ARG*     1.3    75.0    -      -       +      +
    793Z  LYS*     1.3    61.6    +      -       -      +
    795Z  MET*     3.9     9.3    -      -       +      +
    796Z  ALA*     2.9    31.9    +      -       -      +
    850Z  TRP      4.4     1.6    -      -       -      +
    851Z  SER*     3.5    31.9    -      -       -      +
    854Z  GLU*     4.2    16.8    -      -       +      +
    855Z  ILE*     3.5    27.4    -      -       +      +
    858Z  GLN*     3.7    16.7    -      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LYS 793 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     43B    U      5.4     4.2    +      -       -      -
    101B    A      3.3    20.6    +      -       -      +
    102B    C      3.2    40.9    +      -       -      +
    104B    G      3.3    22.5    +      -       -      -
    789Z  GLU*     3.1    55.9    +      -       +      +
    790Z  ASP*     4.0     7.6    -      -       -      +
    792Z  LEU*     1.3    77.1    -      -       -      +
    794Z  LYS*     1.3    56.9    +      -       +      +
    797Z  ASN*     3.1    27.7    +      -       -      +
    858Z  GLN*     3.6    22.0    -      -       -      +
    862Z  GLN*     3.6     7.7    +      -       -      +
   1201Z   MG      3.8     5.5    -      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with LYS 794 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      3B    A      5.1     8.8    -      -       -      +
     44B    G      3.7     1.1    -      -       -      +
     45B    C      3.2    15.4    +      -       -      -
     46B    U      4.8     1.2    +      -       -      -
     99B    G      3.9     6.1    -      -       -      +
    100B    C      3.0    47.3    +      -       -      +
    101B    A      3.6    24.5    -      -       -      +
    620Z  LEU*     4.9     1.3    -      -       +      -
    621Z  PRO*     6.2     0.2    -      -       +      -
    739Z  ILE*     3.8    28.8    -      -       +      +
    790Z  ASP*     3.1    44.5    +      -       -      +
    791Z  ARG      4.0     2.9    -      -       -      +
    793Z  LYS*     1.3    74.1    -      -       -      +
    795Z  MET*     1.3    61.5    +      -       -      +
    797Z  ASN*     3.5     5.2    +      -       -      +
    798Z  THR*     2.8    35.5    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with MET 795 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    575Z  LEU*     4.8     0.7    -      -       -      -
    580Z  ALA*     4.1    29.6    -      -       +      +
    618Z  ILE*     5.8     0.9    -      -       +      -
    620Z  LEU*     3.9    16.5    -      -       +      +
    791Z  ARG*     2.9    57.7    +      -       +      +
    792Z  LEU*     3.9     8.7    -      -       +      +
    794Z  LYS*     1.3    74.9    -      -       -      +
    796Z  ALA*     1.3    60.2    +      -       -      +
    798Z  THR*     3.3     5.9    +      -       -      -
    799Z  ILE*     2.9    46.3    +      -       +      +
    855Z  ILE*     3.5    41.7    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ALA 796 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    792Z  LEU      2.9    18.8    +      -       -      +
    795Z  MET*     1.3    76.2    -      -       -      +
    797Z  ASN*     1.3    58.0    +      -       -      +
    799Z  ILE*     3.4     3.0    +      -       -      +
    800Z  ILE*     3.0    32.8    +      -       -      +
    855Z  ILE*     4.5     4.9    -      -       -      +
    858Z  GLN*     3.7    27.8    -      -       +      +
    859Z  VAL*     3.6    23.1    -      -       +      +
    862Z  GLN*     3.8    13.5    -      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ASN 797 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    101B    A      3.4    39.3    +      -       -      +
    102B    C      3.3    20.2    +      -       -      -
    470Z  ASP*     5.6     3.2    +      -       -      -
    472Z  SER*     5.1     4.8    +      -       -      -
    473Z  ILE*     6.0     1.0    -      -       -      +
    793Z  LYS      3.1    18.8    +      -       -      +
    794Z  LYS      3.8     3.9    -      -       -      +
    795Z  MET      3.2     0.2    -      -       -      -
    796Z  ALA*     1.3    74.8    -      -       -      +
    798Z  THR*     1.3    68.6    +      -       -      +
    800Z  ILE*     3.1     4.7    +      -       -      +
    801Z  MET*     2.9    45.1    +      -       -      +
    815Z  TRP*     4.5     4.2    -      -       -      -
    862Z  GLN*     3.7    14.1    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with THR 798 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      3B    A      3.3    32.0    +      -       +      +
      4B    G      5.2     0.9    +      -       -      +
    618Z  ILE*     3.5    27.6    -      -       +      -
    619Z  LYS      5.0     1.3    -      -       -      +
    620Z  LEU*     4.0     5.0    -      -       +      +
    794Z  LYS      2.8    24.6    +      -       -      -
    795Z  MET*     3.3     6.9    +      -       -      -
    797Z  ASN*     1.3    79.5    +      -       -      +
    799Z  ILE*     1.3    63.3    +      -       -      +
    801Z  MET*     3.3     4.2    +      -       -      +
    802Z  HIS*     2.9    46.5    +      -       +      -
    815Z  TRP*     5.0     7.5    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ILE 799 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    571Z  MET*     4.3     3.2    -      -       -      +
    573Z  ILE*     4.1    32.5    -      -       +      -
    575Z  LEU*     4.7     2.0    -      -       +      -
    581Z  ALA*     4.7     3.4    -      -       +      -
    618Z  ILE*     4.5    23.3    -      -       +      -
    795Z  MET*     2.9    33.7    +      -       +      +
    796Z  ALA      3.7     4.0    -      -       -      +
    797Z  ASN      3.2     0.2    -      -       -      -
    798Z  THR*     1.3    76.2    -      -       -      +
    800Z  ILE*     1.3    63.2    +      -       -      +
    802Z  HIS*     3.6     1.7    +      -       -      +
    803Z  ALA*     3.1    21.8    +      -       -      +
    825Z  ILE*     4.5     6.5    -      -       +      -
    827Z  PHE*     4.2    10.3    -      -       +      -
    855Z  ILE*     3.9    28.0    -      -       +      -
    859Z  VAL*     4.1    24.2    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ILE 800 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    473Z  ILE*     4.8     4.7    -      -       +      -
    796Z  ALA      3.0    21.9    +      -       -      +
    797Z  ASN*     3.1     9.6    +      -       -      +
    799Z  ILE*     1.3    76.6    -      -       -      +
    801Z  MET*     1.3    65.8    +      -       -      +
    803Z  ALA*     3.2     5.2    +      -       -      +
    804Z  LEU*     2.9    48.2    +      -       +      +
    825Z  ILE*     4.3     2.0    -      -       +      -
    859Z  VAL*     3.4    36.8    -      -       +      +
    862Z  GLN*     3.7    26.7    -      -       +      +
    863Z  GLY*     3.5    18.6    -      -       -      +
    866Z  TYR*     5.3     1.8    -      -       +      -
    868Z  LEU*     4.1    12.1    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with MET 801 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    472Z  SER*     4.0     9.6    -      -       -      +
    473Z  ILE*     3.6    35.9    -      -       +      -
    797Z  ASN*     2.9    39.2    +      -       -      +
    798Z  THR      3.9     1.6    -      -       -      +
    799Z  ILE      3.3     0.2    -      -       -      -
    800Z  ILE*     1.3    80.2    -      -       -      +
    802Z  HIS*     1.3    60.2    +      -       -      +
    804Z  LEU*     3.3     4.4    +      -       -      -
    805Z  GLY      3.1     4.5    +      -       -      -
    806Z  TYR*     2.9    66.6    +      -       +      +
    815Z  TRP*     3.6    47.1    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with HIS 802 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     17B    G      3.1    22.4    +      -       -      +
    571Z  MET*     4.0    10.4    -      -       +      +
    616Z  PHE*     3.4    38.1    -      +       +      -
    617Z  ASN      5.5     0.6    +      -       -      -
    618Z  ILE*     3.9    18.0    -      -       +      +
    798Z  THR*     2.9    45.4    +      -       +      +
    799Z  ILE      4.0     2.9    -      -       -      +
    801Z  MET*     1.3    75.7    -      -       -      +
    803Z  ALA*     1.3    58.1    +      -       -      +
    805Z  GLY      3.0    15.4    +      -       -      -
    806Z  TYR      4.1    15.5    +      -       -      -
    807Z  CYS*     5.7     2.9    -      -       +      +
    815Z  TRP*     4.8    11.7    -      +       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ALA 803 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    571Z  MET*     3.7    18.3    -      -       -      +
    799Z  ILE      3.1    19.0    +      -       -      +
    800Z  ILE*     3.2     5.4    +      -       -      +
    802Z  HIS*     1.3    76.7    -      -       -      +
    804Z  LEU*     1.3    56.8    +      -       -      +
    820Z  PRO      4.4     0.3    -      -       -      +
    821Z  ALA*     3.3     2.4    -      -       -      +
    822Z  CYS*     2.6    43.6    +      -       +      +
    825Z  ILE*     3.6    30.3    -      -       +      -
    868Z  LEU*     4.7     5.4    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 804 (chain Z). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    473Z  ILE*     3.7    27.6    -      -       +      -
    560Z  GLY*     3.4    25.3    -      -       -      -
    561Z  ILE*     3.7    31.2    -      -       +      -
    564Z  LEU*     4.1     1.8    -      -       +      -
    800Z  ILE*     2.9    30.2    +      -       +      +
    801Z  MET*     3.8     5.4    -      -       -      +
    802Z  HIS      3.1     0.6    -      -       -      -
    803Z  ALA*     1.3    78.0    -      -       -      +
    805Z  GLY*     1.3    58.5    +      -       -      +
    806Z  TYR*     3.4    15.1    -      -       +      -
    821Z  ALA*     3.5    21.6    -      -       +      +
    822Z  CYS      4.8     0.2    -      -       -      +
    866Z  TYR*     4.3     8.7    -      -       +      -
    868Z  LEU*     3.9    33.4    -      -       +      -
----------------------------------------------------------
 Back to top of page


A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il