Contacts of the helix formed by residues 151 - 180 (chain B) in PDB entry 5X11
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 151 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138B LEU* 5.2 7.8 - - + +
141B SER* 4.9 14.6 - - - +
145B MET* 4.0 10.6 - - + +
149B SER* 3.1 12.3 + - - +
150B PRO* 1.3 89.6 - - - +
152B PHE* 1.3 57.2 + - - +
153B GLY 3.3 2.5 - - - -
154B HIS* 3.2 20.1 + - + +
155B TYR* 2.9 28.6 + - - +
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Residues in contact with PHE 152 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105A ILE* 3.6 29.8 - - + -
175A ILE* 4.5 13.2 - - + -
178A MET* 4.5 23.6 - - + -
179A ILE* 5.7 2.5 - - + -
145B MET* 4.1 11.2 - - - -
146B SER 3.2 27.8 - - - +
147B PHE* 3.6 35.0 - + + +
149B SER* 3.0 19.3 + - - +
150B PRO 3.3 1.0 - - - -
151B ASP* 1.3 78.2 - - - +
153B GLY* 1.3 57.4 + - - +
155B TYR* 3.3 14.8 + + - +
156B LEU* 3.0 66.7 + - + +
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Residues in contact with GLY 153 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102A ALA 4.0 12.1 - - - -
103A TYR* 3.5 37.5 - - - -
105A ILE* 4.1 8.2 - - - +
13B ARG* 6.0 0.4 - - - -
150B PRO 4.8 2.8 + - - -
151B ASP* 3.3 0.4 - - - +
152B PHE* 1.3 76.8 - - - +
154B HIS* 1.3 65.1 + - - +
156B LEU* 3.3 9.8 + - - +
157B VAL* 3.3 10.0 + - - +
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Residues in contact with HIS 154 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103A TYR* 4.2 8.2 - - + -
29B GLU* 3.3 47.8 + - + +
138B LEU* 4.5 17.5 - - + +
150B PRO 5.5 0.2 + - - -
151B ASP* 3.2 24.5 + - + +
153B GLY* 1.3 74.2 - - - +
155B TYR* 1.3 63.1 + - - +
157B VAL* 3.1 12.7 - - - +
158B LEU* 3.0 43.9 + - + +
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Residues in contact with TYR 155 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
175A ILE* 5.1 4.7 - - + +
178A MET* 3.9 31.1 - - + +
135B TYR* 3.8 14.0 + + - -
138B LEU* 5.2 6.4 - - + +
139B MET* 3.4 32.3 - - + +
145B MET* 3.7 34.5 - - + -
151B ASP 2.9 14.1 + - - +
152B PHE* 3.3 21.1 + + - +
154B HIS* 1.3 76.2 - - - +
156B LEU* 1.3 58.8 + - + +
158B LEU* 3.9 4.9 - - + -
159B THR* 2.7 66.1 + - + +
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Residues in contact with LEU 156 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99A MET* 3.9 2.7 - - - -
102A ALA* 3.6 31.0 - - + +
105A ILE* 3.8 24.0 - - + -
117A PHE* 4.0 17.3 - - + -
171A TRP* 3.5 9.0 - - + -
175A ILE* 3.6 26.9 - - + -
152B PHE* 3.0 53.3 + - + +
153B GLY 3.7 4.7 - - - +
154B HIS 3.2 0.6 + - - -
155B TYR* 1.3 81.8 - - + +
157B VAL* 1.3 62.6 + - - +
159B THR* 3.1 15.2 + - - -
160B LYS* 3.1 16.1 + - - +
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Residues in contact with VAL 157 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99A MET* 3.7 34.8 - - + +
103A TYR* 3.6 28.3 - - + +
29B GLU* 3.8 37.2 - - + +
30B LEU* 5.0 4.9 - - + -
32B GLN* 5.2 0.3 - - - +
33B PHE* 3.1 26.7 - - + -
153B GLY 3.3 6.3 + - - +
154B HIS 3.1 18.4 + - - +
156B LEU* 1.3 75.0 - - - +
158B LEU* 1.3 57.0 + - - +
161B ALA* 3.1 23.7 + - - +
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Residues in contact with LEU 158 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29B GLU* 5.1 5.8 - - + -
131B LEU* 3.7 39.0 - - + +
134B SER* 3.9 17.7 - - - +
135B TYR* 3.9 33.9 - - + +
138B LEU* 4.2 10.3 - - + -
154B HIS* 3.0 41.1 + - + +
155B TYR* 3.9 4.7 - - - +
157B VAL* 1.3 77.6 - - + +
159B THR* 1.3 60.4 + - - +
161B ALA* 3.3 3.1 + - - +
162B LEU* 2.9 28.5 + - + +
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Residues in contact with THR 159 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
171A TRP* 3.3 16.4 + - - -
175A ILE* 4.7 2.6 - - + +
135B TYR* 3.7 17.9 - - + +
155B TYR* 2.7 62.0 + - + +
156B LEU* 3.1 10.0 + - - -
158B LEU* 1.3 72.6 - - - +
160B LYS* 1.3 58.2 + - - +
162B LEU* 3.5 7.3 + - + +
163B GLU* 2.8 43.9 + - - +
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Residues in contact with LYS 160 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96A ASP* 5.1 0.2 - - - -
99A MET* 3.6 20.9 - - + -
164A ARG 5.6 0.6 + - - -
167A ASN* 5.1 3.2 + - - +
168A TYR* 3.5 63.0 - - - +
171A TRP* 3.5 34.3 - - + +
33B PHE* 3.6 21.6 - - + -
156B LEU 3.1 19.4 + - - +
157B VAL 3.8 0.2 - - - +
159B THR* 1.3 78.1 + - - +
161B ALA* 1.3 56.3 + - - +
163B GLU* 3.3 5.3 + - + +
164B ARG* 2.9 40.2 + - + +
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Residues in contact with ALA 161 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32B GLN* 3.9 28.4 - - + +
33B PHE* 3.7 15.7 - - + -
131B LEU* 3.4 21.8 - - + +
157B VAL 3.1 16.5 + - - +
158B LEU* 3.7 5.6 - - - +
160B LYS* 1.3 77.7 - - - +
162B LEU* 1.3 62.7 + - - +
164B ARG* 3.5 9.6 + - - +
165B GLU* 3.1 19.4 + - - +
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Residues in contact with LEU 162 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128B LEU* 3.8 18.8 - - + -
131B LEU* 4.0 27.7 - - + +
132B GLN* 3.8 17.5 - - + +
135B TYR* 3.8 41.5 - - + -
158B LEU* 2.9 17.0 + - + +
159B THR* 3.7 6.5 - - + +
161B ALA* 1.3 74.7 - - - +
163B GLU* 1.3 71.2 + - - +
165B GLU* 3.3 3.9 + - - +
166B LYS* 3.0 41.8 + - + +
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Residues in contact with GLU 163 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167A ASN* 5.6 10.5 - - + +
171A TRP* 4.3 20.0 - - + -
159B THR* 2.8 35.2 + - - +
160B LYS* 3.7 6.5 - - + +
162B LEU* 1.3 81.3 - - - +
164B ARG* 1.3 54.4 + - - +
166B LYS* 3.1 25.8 + - - +
167B ASN* 2.9 35.5 + - - +
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Residues in contact with ARG 164 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92A GLU 4.4 4.9 + - - -
94A VAL* 3.5 34.9 + - - +
96A ASP* 5.9 0.2 - - - +
160A LYS* 5.4 1.3 + - - +
167A ASN* 6.3 0.9 - - - -
32B GLN* 3.0 52.5 + - - +
33B PHE* 3.2 29.5 - - - -
127B LYS* 4.6 4.2 - - - +
160B LYS* 2.9 26.7 + - - +
161B ALA* 3.5 6.9 + - - +
162B LEU 3.3 0.2 - - - -
163B GLU* 1.3 77.3 - - - +
165B GLU* 1.3 68.3 + - - +
167B ASN* 3.7 6.6 + - - +
168B TYR* 3.2 31.9 + - + +
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Residues in contact with GLU 165 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124B ARG* 2.7 56.9 + - - +
127B LYS* 3.4 31.1 + - + +
128B LEU* 4.3 19.7 - - + -
131B LEU* 3.7 25.4 - - + -
161B ALA 3.1 9.0 + - - +
162B LEU 4.0 3.4 - - - +
163B GLU 3.3 0.2 - - - -
164B ARG* 1.3 88.6 + - + +
166B LYS* 1.3 60.5 + - - +
168B TYR* 3.3 3.0 + - - +
169B VAL* 2.9 36.5 + - - +
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Residues in contact with LYS 166 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128B LEU* 3.8 19.5 - - + +
132B GLN* 3.8 27.6 - - - +
162B LEU* 3.0 25.0 + - + +
163B GLU* 3.1 28.3 + - - +
165B GLU* 1.3 75.2 - - - +
167B ASN* 1.3 62.1 + - - +
169B VAL* 3.4 5.4 + - - +
170B SER* 3.0 25.7 + - - -
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Residues in contact with ASN 167 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160A LYS* 5.2 4.7 - - - +
163A GLU* 5.1 15.1 - - + +
164A ARG* 6.2 0.7 - - - -
167A ASN* 4.5 20.4 - - + -
163B GLU 2.9 15.7 + - - +
164B ARG* 3.8 7.2 - - - +
166B LYS* 1.3 77.0 - - - +
168B TYR* 1.3 55.5 + - - +
170B SER* 2.9 21.0 + - - -
171B TRP* 3.0 20.7 + - - +
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Residues in contact with TYR 168 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160A LYS* 3.4 37.2 - - - +
96B ASP* 2.7 32.2 + - - -
98B PHE* 3.3 27.2 - + - +
99B MET* 3.9 2.9 - - - +
120B GLN* 4.6 1.3 - - - -
124B ARG* 3.6 46.6 + - - -
164B ARG* 3.2 21.2 + - + +
165B GLU* 3.7 6.3 - - - +
166B LYS 3.3 0.2 - - - -
167B ASN* 1.3 75.9 - - - +
169B VAL* 1.3 66.1 + - - +
171B TRP* 3.6 3.5 + + - +
172B LEU* 3.1 58.9 + - + +
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Residues in contact with VAL 169 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121B LEU* 3.8 19.9 - - + +
124B ARG* 3.9 35.4 - - + +
125B LYS* 4.0 20.6 - - + -
128B LEU* 4.1 15.9 - - + -
165B GLU 2.9 21.0 + - - +
166B LYS* 3.8 4.0 - - - +
168B TYR* 1.3 75.9 - - - +
170B SER* 1.3 64.3 + - - +
172B LEU* 3.2 4.8 + - - +
173B GLU* 3.0 34.1 + - + +
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Residues in contact with SER 170 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163A GLU* 4.9 6.0 + - - -
166B LYS 3.0 14.2 + - - -
167B ASN* 2.9 20.1 + - - -
169B VAL* 1.3 77.5 - - - +
171B TRP* 1.3 60.0 + - - +
173B GLU* 3.5 8.8 + - - +
174B SER* 3.2 25.1 + - - -
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Residues in contact with TRP 171 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156A LEU* 3.5 26.5 - - + -
159A THR* 3.0 23.6 + - - -
160A LYS* 3.5 30.5 - - + +
163A GLU* 3.9 35.0 + - + +
98B PHE* 4.1 3.4 - + - -
99B MET* 3.5 31.0 - - + -
102B ALA* 4.7 0.7 - - + -
117B PHE* 3.9 22.2 - + - -
167B ASN 3.0 18.8 + - - +
168B TYR* 3.8 3.1 - + - +
170B SER* 1.3 78.6 + - - +
172B LEU* 1.3 95.9 + - + +
174B SER* 3.0 28.5 + - - -
175B ILE* 3.2 28.9 + - + +
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Residues in contact with LEU 172 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98B PHE* 3.7 24.5 - - + -
117B PHE* 3.6 29.6 - - + +
120B GLN* 3.8 20.2 - - + -
121B LEU* 3.9 30.7 - - + -
124B ARG* 3.9 8.3 - - + -
168B TYR* 3.1 43.6 + - + +
169B VAL 3.7 3.6 - - - +
171B TRP* 1.3 85.4 - - + +
173B GLU* 1.3 57.9 + - - +
175B ILE* 3.2 5.0 + - - +
176B LEU* 2.9 34.6 + - + +
----------------------------------------------------------
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Residues in contact with GLU 173 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121B LEU* 3.7 33.0 - - + +
125B LYS* 4.5 13.2 + - - -
169B VAL* 3.0 28.2 + - + +
170B SER* 3.7 8.3 - - - +
172B LEU* 1.3 75.0 - - - +
174B SER* 1.3 62.0 + - - +
176B LEU* 4.0 9.7 - - - +
177B ALA* 3.2 22.9 + - - +
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Residues in contact with SER 174 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163A GLU* 5.8 0.2 + - - -
170B SER 3.2 13.6 + - - -
171B TRP* 3.0 16.4 + - - -
173B GLU* 1.3 76.6 - - - +
175B ILE* 1.3 71.0 + - - +
177B ALA* 3.5 7.8 + - - +
178B MET* 3.4 24.7 + - - +
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Residues in contact with ILE 175 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152A PHE* 4.1 5.4 - - + -
155A TYR* 4.9 11.2 - - + +
156A LEU* 3.4 33.4 - - + -
159A THR* 4.9 3.4 - - + +
117B PHE* 3.6 20.4 - - + -
171B TRP* 3.2 44.6 + - + +
172B LEU 3.2 6.3 + - - +
174B SER* 1.3 82.4 - - - +
176B LEU* 1.3 54.5 + - - +
178B MET* 3.0 11.5 + - - +
179B ILE* 2.7 54.9 + - + +
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Residues in contact with LEU 176 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114B SER* 3.8 15.0 - - - +
117B PHE* 3.9 18.8 - - + +
118B THR* 3.7 34.3 - - + +
121B LEU* 3.9 29.4 - - + -
172B LEU 2.9 17.7 + - - +
173B GLU* 4.0 8.7 - - - +
175B ILE* 1.3 78.1 - - - +
177B ALA* 1.3 55.5 + - - +
179B ILE* 4.1 5.2 - - + +
180B ASP* 2.8 61.0 + - - +
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Residues in contact with ALA 177 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
173B GLU 3.2 14.7 + - - +
174B SER* 3.5 12.8 - - - +
175B ILE 3.2 0.2 - - - -
176B LEU* 1.3 77.3 - - - +
178B MET* 1.3 61.5 + - + +
180B ASP* 4.1 12.2 - - - -
----------------------------------------------------------
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Residues in contact with MET 178 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145A MET* 3.6 33.4 - - + +
146A SER* 4.0 12.1 - - - -
147A PHE* 3.8 16.6 + - - +
152A PHE* 4.0 18.2 - - + -
155A TYR* 3.9 29.2 - - + +
174B SER 3.4 15.3 - - - +
175B ILE* 3.0 12.0 + - - +
177B ALA* 1.3 79.0 - - + +
179B ILE* 1.3 64.2 + - - +
180B ASP 4.6 1.7 - - - +
----------------------------------------------------------
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Residues in contact with ILE 179 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147A PHE* 4.1 25.2 - - + +
152A PHE* 4.3 3.8 - - + -
105B ILE* 4.1 5.4 - - + -
110B ARG* 3.6 35.2 - - - +
113B ALA* 4.0 15.9 - - + +
114B SER* 3.7 17.9 - - - +
117B PHE* 3.7 30.3 - - + -
175B ILE* 2.7 44.0 + - + +
176B LEU* 3.9 5.8 - - + +
178B MET* 1.3 76.2 - - - +
180B ASP* 1.3 63.9 + - - +
----------------------------------------------------------
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Residues in contact with ASP 180 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111B GLN* 5.4 1.9 + - - -
114B SER* 2.7 31.7 + - - -
118B THR* 4.9 0.3 + - - -
176B LEU* 2.8 41.2 + - - +
177B ALA* 4.1 14.1 - - - -
178B MET 4.6 2.0 - - - +
179B ILE* 1.3 75.7 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il