Contacts of the helix formed by residues 514 - 560 (chain D) in PDB entry 5YW9
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TRP 514 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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509D LEU* 3.5 7.5 + - + -
512D TYR* 3.2 71.0 + + + +
513D ALA* 1.3 77.3 - - - +
515D GLU* 1.3 61.1 + - - +
516D SER 3.4 2.0 - - - -
517D ILE* 3.2 21.2 + - + +
518D PHE* 3.0 31.2 - + + -
1432D PHE* 5.0 6.5 - + - -
1439D ASN 4.9 5.2 - - - -
1440D LEU 4.8 4.7 - - - -
1442D PRO* 4.5 25.8 - - + -
1443D GLU* 4.2 18.3 + - + -
1494D ARG* 3.1 46.9 - - + -
1497D VAL* 5.4 1.8 - - + -
1498D ARG* 4.6 14.3 - - + +
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Residues in contact with GLU 515 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502D MET* 4.1 0.3 - - - +
509D LEU* 3.6 33.7 - - + +
510D LYS* 3.8 30.3 + - + +
513D ALA* 3.1 16.0 - - + +
514D TRP* 1.3 75.7 - - - +
516D SER* 1.3 65.7 + - - +
518D PHE* 3.1 5.2 + - - +
519D CYS* 2.9 27.4 + - - +
1106D ILE* 2.4 49.4 - - + +
1107D LEU* 4.5 9.5 - - - +
1113D PHE* 5.3 2.3 - - - -
1415D LEU* 4.5 8.1 - - - +
1419D ARG* 5.1 1.8 + - - -
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Residues in contact with SER 516 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
513D ALA 4.4 3.6 + - - -
515D GLU* 1.3 82.8 - - - +
517D ILE* 1.3 71.5 + - - +
519D CYS* 3.2 8.0 + - - +
520D SER* 3.0 33.5 + - - -
1106D ILE* 4.7 8.5 - - - -
1416D HIS* 4.4 18.5 + - - -
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Residues in contact with ILE 517 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
513D ALA 4.0 3.8 - - - +
514D TRP* 3.4 26.9 - - + +
515D GLU 3.1 0.6 - - - -
516D SER* 1.3 91.0 - - - +
518D PHE* 1.3 60.4 + - + +
520D SER* 3.6 15.7 + - - -
521D ARG* 3.7 7.1 + - - +
1416D HIS* 6.0 1.3 - - - +
1438D PHE* 5.1 6.7 - - + -
1442D PRO* 3.1 49.1 - - + +
1443D GLU* 3.2 43.5 - - + +
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Residues in contact with PHE 518 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501D GLU* 5.3 3.1 - - - -
502D MET* 3.7 28.0 - - + -
509D LEU* 3.5 22.0 - - + -
512D TYR* 5.6 0.9 - + - -
514D TRP* 3.0 36.8 - + + -
515D GLU 3.1 5.3 + - - +
517D ILE* 1.3 76.1 - - + +
519D CYS* 1.3 60.7 + - - +
520D SER 3.2 0.7 - - - -
521D ARG* 3.1 8.5 + - + +
522D VAL* 2.9 31.4 + - - +
1432D PHE* 2.7 70.9 - + + -
1438D PHE* 4.4 15.9 - + - -
1442D PRO* 4.5 11.0 - - + -
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Residues in contact with CYS 519 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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502D MET* 4.4 1.3 - - - +
515D GLU 2.9 12.7 + - - +
516D SER* 3.2 8.3 + - - +
518D PHE* 1.3 72.9 - - - +
520D SER* 1.3 60.6 + - - +
522D VAL* 3.3 8.9 + - - -
523D GLU* 2.9 39.2 + - - +
1102D LEU* 3.5 10.6 - - + +
1103D ASN* 5.9 1.1 - - - +
1106D ILE* 3.5 35.4 - - + -
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Residues in contact with SER 520 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516D SER 3.0 13.8 + - - -
517D ILE* 3.6 12.4 - - - -
518D PHE 3.2 0.2 - - - -
519D CYS* 1.3 76.3 - - - +
521D ARG* 1.3 57.4 + - - +
523D GLU* 3.3 12.5 + - - +
524D VAL* 2.9 34.2 + - - +
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Residues in contact with ARG 521 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
494D GLU* 5.4 2.6 + - - -
498D GLN* 4.1 25.9 - - - +
517D ILE 3.7 4.0 + - - +
518D PHE* 3.1 11.9 + - + +
520D SER* 1.3 74.9 - - - +
522D VAL* 1.3 67.1 + - + +
524D VAL* 3.1 35.5 + - - +
525D THR* 3.1 29.9 + - - -
1438D PHE* 3.9 41.2 - - + -
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Residues in contact with VAL 522 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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495D ARG* 5.0 12.4 - - + +
498D GLN* 4.2 26.2 - - + +
499D THR* 4.8 11.4 - - - +
502D MET* 3.7 23.3 - - - -
518D PHE 2.9 19.8 + - - +
519D CYS* 3.6 7.9 - - - +
521D ARG* 1.3 75.2 - - + +
523D GLU* 1.3 63.1 + - - +
525D THR* 3.2 7.0 + - - -
526D ARG* 3.2 18.5 + - - +
1098D HIS* 4.7 9.0 - - + +
1102D LEU* 3.8 25.8 - - + -
1125D PHE* 6.2 1.6 - - + -
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Residues in contact with GLU 523 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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519D CYS* 2.9 19.0 + - - +
520D SER* 3.7 9.2 - - - +
522D VAL* 1.3 72.4 - - - +
524D VAL* 1.3 66.5 + - - +
526D ARG* 3.1 18.3 + - + +
527D ARG* 3.2 29.3 + - - +
1098D HIS* 5.7 2.2 - - + -
1099D ARG* 4.2 18.7 - - + +
1102D LEU* 2.9 28.7 - - + +
1103D ASN* 3.1 24.9 + - - +
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Residues in contact with VAL 524 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
520D SER* 2.9 23.4 + - - +
521D ARG* 3.1 33.8 + - - +
523D GLU* 1.3 77.8 - - - +
525D THR* 1.3 64.1 + - - +
527D ARG* 3.3 36.6 + - - +
528D LYS* 3.8 14.4 + - + +
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Residues in contact with THR 525 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491D HIS* 4.4 14.5 - - + +
494D GLU* 5.0 7.5 + - + +
495D ARG* 3.7 37.9 - - + +
498D GLN* 3.0 31.5 + - - -
521D ARG* 3.1 11.2 + - - -
522D VAL* 3.6 8.1 - - - -
523D GLU 3.2 0.4 - - - -
524D VAL* 1.3 77.6 - - - +
526D ARG* 1.3 63.0 + - - +
528D LYS* 3.1 13.2 + - + +
529D GLU* 3.1 19.2 + - + +
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Residues in contact with ARG 526 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495D ARG* 4.9 1.8 - - - +
522D VAL 3.2 6.5 + - - +
523D GLU* 3.1 12.1 + - - +
525D THR* 1.3 81.9 - - - +
527D ARG* 1.3 57.2 + - + +
529D GLU* 3.2 14.0 + - - +
530D MET* 2.9 34.1 + - + +
1098D HIS* 3.3 40.4 - - + +
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Residues in contact with ARG 527 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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523D GLU* 3.2 31.4 + - - +
524D VAL* 3.3 40.3 + - - +
525D THR 3.2 0.6 - - - -
526D ARG* 1.3 76.3 - - + +
528D LYS* 1.3 59.0 + - + +
530D MET* 3.2 11.0 + - + +
531D THR* 2.9 32.2 + - - +
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Residues in contact with LYS 528 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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491D HIS* 3.6 35.9 + - + -
524D VAL* 3.8 17.5 - - + +
525D THR* 3.1 9.1 + - - +
527D ARG* 1.3 73.1 - - + +
529D GLU* 1.3 66.9 + - - +
531D THR* 3.1 14.1 + - - +
532D SER* 3.1 21.1 + - - -
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Residues in contact with GLU 529 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488D THR* 4.7 13.8 - - + +
491D HIS* 4.5 17.6 - - + -
492D SER* 4.0 12.0 - - - +
495D ARG* 3.0 34.7 + - - -
525D THR* 3.1 13.0 + - + +
526D ARG* 3.2 11.3 + - - +
528D LYS* 1.3 77.7 - - - +
530D MET* 1.3 62.5 + - + +
532D SER* 2.8 24.9 + - - -
533D LEU* 3.4 16.5 + - + +
1098D HIS* 4.9 4.0 + - - -
1129D CYS* 5.5 1.4 - - - +
1130D ASN* 3.1 24.1 - - - +
1133D ASP* 4.0 9.3 - - - +
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Residues in contact with MET 530 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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526D ARG* 2.9 19.1 + - + +
527D ARG* 3.4 12.6 - - + +
529D GLU* 1.3 76.8 - - - +
531D THR* 1.3 62.7 + - - +
533D LEU* 3.3 31.5 + - + +
534D ARG* 3.3 12.3 + - - +
1091D LEU* 4.7 7.0 - - - +
1094D ALA* 3.1 20.2 - - + +
1095D LYS* 2.9 73.6 - - + +
1098D HIS* 4.7 9.9 - - + -
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Residues in contact with THR 531 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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527D ARG* 2.9 15.4 + - - +
528D LYS* 3.1 17.6 + - - +
530D MET* 1.3 77.8 - - - +
532D SER* 1.3 64.4 + - - +
533D LEU 3.4 0.2 + - - -
534D ARG* 3.4 16.3 + - - +
535D ALA* 4.1 3.3 + - - +
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Residues in contact with SER 532 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484D ALA* 5.1 3.9 - - - +
487D SER* 5.2 6.1 - - - -
488D THR* 2.5 45.6 + - - +
491D HIS* 5.3 6.7 - - - -
528D LYS 3.1 11.3 + - - -
529D GLU* 2.8 19.4 + - - -
531D THR* 1.3 77.9 - - - +
533D LEU* 1.3 58.7 + - - +
535D ALA* 3.2 18.2 + - - +
536D PHE* 3.3 10.6 + - - +
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Residues in contact with LEU 533 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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488D THR* 4.3 10.3 - - + +
529D GLU* 3.5 17.3 - - + +
530D MET* 3.4 34.3 - - + +
532D SER* 1.3 76.6 + - - +
534D ARG* 1.3 59.9 + - - +
536D PHE* 3.7 15.9 - - + +
537D ALA* 2.9 32.4 + - - +
1091D LEU* 3.8 17.7 - - + +
1094D ALA* 5.2 1.8 - - + -
1133D ASP* 3.4 53.2 - - + +
1134D GLN* 3.7 14.6 - - - +
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Residues in contact with ARG 534 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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530D MET 3.3 8.0 + - - +
531D THR* 3.7 12.8 - - - +
532D SER 3.2 0.8 - - - -
533D LEU* 1.3 79.8 - - - +
535D ALA* 1.3 58.3 + - - +
537D ALA* 3.7 1.6 - - - +
538D VAL* 2.9 35.2 + - + +
1087D GLU* 5.4 1.8 - - - +
1091D LEU* 3.3 23.7 - - + +
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Residues in contact with ALA 535 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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484D ALA* 5.4 4.9 - - + -
531D THR 4.1 2.1 + - - +
532D SER* 3.2 11.1 + - - +
534D ARG* 1.3 79.3 - - - +
536D PHE* 1.3 63.9 + - - +
538D VAL* 3.2 9.4 + - - +
539D TYR* 3.0 41.4 + - + -
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Residues in contact with PHE 536 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481D LEU* 3.6 45.0 - - + +
484D ALA* 4.3 17.1 - - + +
485D GLN* 3.7 13.5 - - - -
488D THR* 5.3 3.6 - - - +
532D SER 3.3 11.2 + - - +
533D LEU* 3.7 23.1 - - + +
534D ARG 3.3 0.2 - - - -
535D ALA* 1.3 78.5 - - - +
537D ALA* 1.3 63.6 + - + +
539D TYR* 3.2 8.5 + - - +
540D THR* 3.0 43.4 + - + -
1133D ASP 4.2 9.4 - - - -
1134D GLN* 3.2 46.7 - - - -
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Residues in contact with ALA 537 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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533D LEU 2.9 17.6 + - - +
534D ARG 3.9 1.8 - - - +
536D PHE* 1.3 81.9 - - + +
538D VAL* 1.3 60.1 + - - +
540D THR* 3.3 7.8 + - - -
541D SER* 2.8 29.5 + - - -
1087D GLU* 3.9 26.9 - - + +
1091D LEU* 4.2 14.8 - - + -
1137D PRO* 6.1 7.2 - - + -
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Residues in contact with VAL 538 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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534D ARG* 2.9 22.1 + - + +
535D ALA* 3.2 12.1 + - - +
537D ALA* 1.3 77.7 - - - +
539D TYR* 1.3 62.9 + - + +
541D SER* 3.2 7.0 + - - -
542D ILE* 2.9 42.3 + - + +
1087D GLU* 4.0 18.8 - - - +
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Residues in contact with TYR 539 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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476D PHE* 5.9 2.5 - + - -
477D VAL* 3.9 20.2 - - + +
480D LYS* 3.6 57.9 - - + -
481D LEU* 4.6 14.1 - - + +
484D ALA* 5.0 5.4 - - + -
535D ALA* 3.0 39.1 + - + -
536D PHE* 3.6 9.4 - - - +
538D VAL* 1.3 77.1 - - + +
540D THR* 1.3 65.4 + - - +
542D ILE* 3.2 20.8 + - + +
543D SER* 2.9 22.9 + - - -
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Residues in contact with THR 540 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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481D LEU* 4.5 9.0 - - - +
536D PHE* 3.0 37.7 + - + -
537D ALA* 3.6 11.4 - - - -
538D VAL 3.3 0.2 - - - -
539D TYR* 1.3 75.7 - - - +
541D SER* 1.3 58.2 + - - +
543D SER* 3.2 7.3 + - - -
544D ILE* 3.0 38.8 + - + +
1137D PRO* 6.1 1.8 - - + -
1138D SER* 4.0 30.3 - - - +
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Residues in contact with SER 541 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537D ALA 2.8 17.4 + - - -
538D VAL* 3.5 8.7 - - - -
539D TYR 3.2 0.2 - - - -
540D THR* 1.3 77.6 - - - +
542D ILE* 1.3 57.6 + - - +
544D ILE* 4.7 1.3 - - - -
545D PHE* 2.8 29.2 + - - +
1080D LEU* 5.3 2.3 - - - +
1083D SER* 2.8 50.2 + - - -
1084D VAL* 3.8 8.7 + - - +
1087D GLU* 4.4 8.1 - - - -
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Residues in contact with ILE 542 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477D VAL* 4.6 11.9 - - + -
538D VAL* 2.9 32.2 + - + +
539D TYR* 3.2 23.8 + - + +
541D SER* 1.3 75.5 - - - +
543D SER* 1.3 58.4 + - - +
545D PHE* 3.3 12.2 + - + +
546D MET* 2.9 57.3 + - + +
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Residues in contact with SER 543 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474D GLN* 3.8 27.7 + - - +
477D VAL* 4.4 14.6 - - - +
539D TYR 2.9 14.0 + - - -
540D THR* 3.5 11.7 - - - -
542D ILE* 1.3 78.8 - - - +
544D ILE* 1.3 68.9 + - - +
545D PHE 3.2 0.2 + - - -
546D MET* 3.3 1.2 + - - -
547D ASN* 3.0 23.1 + - - +
591D PHE* 4.8 4.3 - - - -
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Residues in contact with ILE 544 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540D THR* 3.0 28.9 + - + +
541D SER* 3.9 3.8 - - - +
543D SER* 1.3 80.2 - - - +
545D PHE* 1.3 63.1 + - - +
547D ASN* 3.3 23.0 - - - +
548D THR* 3.6 8.9 + - - +
1023D LYS* 5.8 2.2 - - - +
1079D CYS* 4.6 2.1 - - - -
1083D SER* 4.0 11.4 - - - +
1138D SER* 5.4 8.5 - - - +
1141D GLU* 3.2 44.6 - - + +
1142D CYS* 5.9 4.5 - - + +
1145D ARG* 4.3 18.2 + - - +
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Residues in contact with PHE 545 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541D SER 2.8 19.1 + - - +
542D ILE* 3.6 15.5 - - + +
544D ILE* 1.3 76.0 - - - +
546D MET* 1.3 85.7 + - + +
547D ASN 3.3 0.3 + - - -
548D THR* 3.4 2.8 + - - -
549D ALA* 2.9 48.4 + - + +
1076D ILE* 4.2 13.2 - - + -
1079D CYS* 4.0 11.5 - - + -
1080D LEU* 4.1 45.8 - - + -
1083D SER* 4.2 10.7 + - - +
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Residues in contact with MET 546 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470D LEU* 5.6 6.0 - - + +
473D VAL* 3.7 34.3 - - + -
474D GLN* 4.0 15.9 - - - +
477D VAL* 4.5 9.2 - - + -
542D ILE* 2.9 40.7 + - + +
543D SER 3.8 3.4 - - - +
545D PHE* 1.3 91.8 - - + +
547D ASN* 1.3 64.1 + - - +
549D ALA* 4.0 6.5 - - - -
550D ILE* 3.0 41.3 + - + +
591D PHE* 5.0 0.7 - - - -
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Residues in contact with ASN 547 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470D LEU* 6.2 0.2 - - - +
543D SER* 3.0 13.2 + - - +
544D ILE* 3.3 20.1 - - - +
545D PHE 3.2 0.4 - - - -
546D MET* 1.3 75.8 - - - +
548D THR* 1.3 58.8 + - - +
550D ILE* 5.1 0.2 - - - +
551D PRO* 3.1 21.3 - - - +
587D VAL* 4.7 5.7 - - - +
591D PHE* 3.3 45.9 - - + -
1145D ARG* 3.2 34.5 + - - +
1297D TRP* 5.2 7.9 - - - -
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Residues in contact with THR 548 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544D ILE* 3.6 3.2 + - - +
545D PHE 3.4 1.0 + - - -
546D MET 3.2 0.2 - - - -
547D ASN* 1.3 77.4 - - - +
549D ALA* 1.3 61.9 + - - +
550D ILE 3.6 0.7 - - - -
551D PRO* 3.6 11.3 - - + +
552D ILE* 3.4 26.4 - - - +
1023D LYS* 4.7 6.5 + - - +
1027D LEU* 6.1 7.4 - - + -
1079D CYS* 2.8 35.8 - - - -
1145D ARG* 3.3 40.6 - - - +
1149D LEU* 5.9 2.2 - - + -
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Residues in contact with ALA 549 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545D PHE* 2.9 47.5 + - + +
546D MET* 3.1 5.6 + - - +
548D THR* 1.3 78.1 - - - +
550D ILE* 1.3 65.5 + - + +
552D ILE* 3.1 5.3 + - - +
553D ALA* 2.8 29.1 + - + +
1076D ILE* 4.4 18.2 - - + +
1079D CYS* 5.4 2.2 - - - -
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Residues in contact with ILE 550 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466D VAL* 4.3 15.7 - - + +
467D ILE* 3.8 25.8 - - + +
470D LEU* 3.6 45.3 - - + -
546D MET* 3.0 28.0 + - + +
547D ASN 5.1 0.2 - - - +
549D ALA* 1.3 81.8 - - + +
551D PRO* 1.3 68.1 - - + +
553D ALA* 4.3 6.5 - - + -
554D ALA* 2.9 24.1 + - - +
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Residues in contact with PRO 551 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467D ILE* 5.5 0.4 - - + -
470D LEU* 5.8 0.4 - - + -
547D ASN 3.1 25.6 - - - +
548D THR* 3.6 12.6 - - + +
550D ILE* 1.3 93.4 - - + +
552D ILE* 1.3 62.1 + - + +
554D ALA* 3.9 4.5 - - + +
555D VAL* 3.2 26.9 + - - +
583D PHE* 5.0 7.1 - - + +
584D HIS* 5.0 18.2 - - + +
587D VAL* 3.9 30.5 - - + -
1027D LEU* 6.5 0.2 - - + -
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Residues in contact with ILE 552 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
548D THR* 3.4 20.2 - - - +
549D ALA 3.1 7.4 + - - +
551D PRO* 1.3 76.1 - - + +
553D ALA* 1.3 61.8 + - - +
555D VAL* 3.3 6.1 + - - +
556D LEU* 2.9 26.9 + - + +
1023D LYS* 6.5 0.9 - - + -
1027D LEU* 4.4 26.5 - - + -
1030D ILE* 5.0 8.1 - - + -
1072D CYS* 3.5 40.0 - - + +
1075D GLY* 4.1 28.5 - - - +
1076D ILE* 4.0 10.3 - - + +
1079D CYS* 5.8 2.7 - - + -
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Residues in contact with ALA 553 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466D VAL* 4.7 12.1 - - + +
549D ALA* 2.8 17.2 + - + +
550D ILE* 3.9 11.4 - - + +
552D ILE* 1.3 73.9 - - - +
554D ALA* 1.3 65.8 + - - +
556D LEU* 4.2 12.1 - - + -
557D ILE* 2.9 36.1 + - + +
1076D ILE* 5.1 4.9 - - + +
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Residues in contact with ALA 554 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463D GLY* 4.9 6.7 - - - +
466D VAL* 4.7 11.8 - - + +
467D ILE* 3.8 22.7 - - + -
550D ILE 2.9 18.1 + - - +
551D PRO* 3.9 5.4 - - + +
553D ALA* 1.3 76.2 - - - +
555D VAL* 1.3 56.6 + - - +
557D ILE* 3.8 1.4 - - - +
558D THR* 2.4 39.4 + - - +
583D PHE* 4.1 21.3 - - + -
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Residues in contact with VAL 555 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
551D PRO 3.2 18.4 - - - +
552D ILE* 3.3 7.0 + - - +
554D ALA* 1.3 74.7 - - - +
556D LEU* 1.3 64.1 + - - +
558D THR* 4.4 1.6 - - - -
559D PHE* 2.9 50.5 + - + +
580D LEU* 4.4 20.2 - - + -
583D PHE* 3.5 26.7 - - + -
1030D ILE* 5.6 3.4 - - + -
1034D LEU* 4.8 2.7 - - + -
1068D PHE* 3.3 27.8 - - + -
1072D CYS* 5.4 0.4 - - - -
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Residues in contact with LEU 556 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552D ILE* 2.9 18.1 + - + +
553D ALA* 3.6 11.2 - - + +
555D VAL* 1.3 81.4 - - - +
557D ILE* 1.3 79.1 + - + +
560D VAL* 3.0 38.5 + - + +
1068D PHE* 4.1 2.5 - - - -
1069D THR* 3.8 30.7 - - + +
1072D CYS* 3.7 40.1 - - + +
1073D SER* 5.3 2.0 - - - +
1076D ILE* 5.3 11.0 - - + -
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Residues in contact with ILE 557 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
459D SER* 5.3 0.2 + - - -
462D ILE* 4.9 20.5 - - + +
463D GLY* 5.9 1.1 - - - -
466D VAL* 5.2 14.6 - - + -
553D ALA* 2.9 24.2 + - + +
554D ALA 4.6 0.4 - - - +
556D LEU* 1.3 92.7 - - + +
558D THR* 1.3 60.2 + - - +
560D VAL* 5.0 2.2 - - + -
561D GLY* 3.6 17.8 + - - +
----------------------------------------------------------
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Residues in contact with THR 558 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456D LEU* 3.6 30.7 - - + -
459D SER* 3.2 25.2 + - - +
460D ALA* 4.7 3.1 - - - -
462D ILE* 6.2 0.2 - - - -
463D GLY* 3.3 24.1 - - - +
554D ALA 2.4 24.9 + - - -
555D VAL* 4.0 2.9 - - - -
557D ILE* 1.3 79.3 - - - +
559D PHE* 1.3 66.6 + - + +
560D VAL 3.4 0.2 - - - -
561D GLY 3.3 0.3 + - - -
562D HIS* 2.8 32.3 + - + +
583D PHE* 4.1 10.3 - - + -
----------------------------------------------------------
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Residues in contact with PHE 559 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456D LEU* 4.0 17.3 - - + -
555D VAL* 2.9 45.4 + - + +
558D THR* 1.3 78.4 - - + +
560D VAL* 1.3 66.4 + - - +
562D HIS* 3.3 12.6 + - + +
563D VAL* 3.3 18.8 + - + +
564D SER 4.5 0.2 + - - -
571D LEU* 4.3 18.8 - - + -
576D ALA* 3.5 24.7 - - + -
579D SER* 3.0 28.9 - - - -
580D LEU* 5.3 1.1 - - + -
583D PHE* 5.2 2.7 - + - -
1034D LEU* 3.5 21.8 - - + -
1037D TRP* 5.9 5.1 - + + -
1065D ALA* 5.9 2.0 - - - +
1068D PHE* 3.9 20.4 - + + -
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Residues in contact with VAL 560 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556D LEU* 3.0 29.5 + - + +
557D ILE* 5.0 1.8 - - + -
559D PHE* 1.3 76.7 - - - +
561D GLY* 1.3 59.9 + - - +
562D HIS 3.5 0.7 + - - -
564D SER* 3.7 27.6 + - - +
565D PHE* 3.7 6.6 + - - +
1065D ALA* 4.5 11.7 - - + +
1066D MET* 6.4 2.0 - - - -
1068D PHE* 4.5 11.9 - - + -
1069D THR* 3.2 29.6 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il