Contacts of the helix formed by residues 1061 - 1107 (chain B) in PDB entry 5YWB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLN1061 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1037B TRP* 4.6 26.3 + - + +
1040B SER* 5.5 4.2 + - - -
1060B ASP* 1.3 88.3 + - - +
1062B SER* 1.3 61.2 + - - +
1064B TYR* 3.2 6.6 + - - +
1065B ALA* 2.9 27.3 + - - +
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Residues in contact with SER1062 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1060B ASP* 3.4 0.4 - - - +
1061B GLN* 1.3 75.1 - - - +
1063B VAL* 1.3 68.2 + - - +
1065B ALA* 3.2 8.6 + - - +
1066B MET* 2.9 25.1 + - - +
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Residues in contact with VAL1063 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1033B TRP* 6.5 0.2 - - + -
1060B ASP* 3.3 32.1 - - + +
1061B GLN 3.2 0.2 - - - -
1062B SER* 1.3 78.9 - - - +
1064B TYR* 1.3 57.7 + - - +
1066B MET* 3.3 13.4 + - + +
1067B VAL* 2.9 42.0 + - + +
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Residues in contact with TYR1064 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1033B TRP* 4.0 23.3 - + + +
1034B LEU* 3.5 40.0 - - + +
1037B TRP* 3.2 76.7 - + + +
1060B ASP* 3.2 7.9 + - - +
1061B GLN 3.2 5.6 + - - +
1063B VAL* 1.3 80.0 - - - +
1065B ALA* 1.3 62.6 + - + +
1067B VAL* 3.2 7.3 + - + +
1068B PHE* 2.9 54.6 + + + +
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Residues in contact with ALA1065 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
560B VAL* 6.5 0.7 - - + -
1061B GLN 2.9 14.6 + - - +
1062B SER* 3.2 12.8 + - - +
1064B TYR* 1.3 85.8 - - + +
1066B MET* 1.3 57.5 + - - +
1068B PHE* 3.7 5.0 - - - +
1069B THR* 2.9 34.9 + - - +
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Residues in contact with MET1066 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1062B SER 2.9 15.4 + - - +
1063B VAL* 3.8 15.5 - - + +
1065B ALA* 1.3 76.0 - - - +
1067B VAL* 1.3 64.1 + - + +
1069B THR* 3.4 5.9 + - - -
1070B LEU* 2.9 36.4 + - + +
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Residues in contact with VAL1067 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1033B TRP* 4.1 41.7 - - + +
1063B VAL* 2.9 32.2 + - + +
1064B TYR* 3.6 9.2 - - + +
1066B MET* 1.3 82.5 - - + +
1068B PHE* 1.3 56.9 + - - +
1070B LEU* 3.3 9.4 + - + +
1071B LEU* 2.9 49.8 + - + +
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Residues in contact with PHE1068 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555B VAL* 5.0 7.4 - - + -
556B LEU* 3.5 44.6 - - + -
559B PHE* 4.6 12.1 - - + -
560B VAL* 4.3 10.1 - - + -
1030B ILE* 3.4 33.2 - - + -
1034B LEU* 3.8 26.7 - - + -
1064B TYR* 2.9 47.0 + + + +
1065B ALA* 3.7 5.2 - - - +
1067B VAL* 1.3 77.4 - - - +
1069B THR* 1.3 56.0 + - - +
1071B LEU* 3.4 5.1 + - - -
1072B CYS* 3.0 46.1 + - - -
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Residues in contact with THR1069 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556B LEU* 4.4 26.6 - - + +
1065B ALA* 2.9 19.9 + - - +
1066B MET* 3.9 6.5 - - - -
1068B PHE* 1.3 75.8 - - - +
1070B LEU* 1.3 61.6 + - - +
1072B CYS* 3.6 3.0 + - - +
1073B SER* 3.6 17.8 + - - -
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Residues in contact with LEU1070 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1066B MET* 2.9 24.4 + - + +
1067B VAL* 3.6 8.7 - - + +
1069B THR* 1.3 75.2 - - - +
1071B LEU* 1.3 63.1 + - + +
1073B SER* 3.2 7.3 + - - -
1074B LEU* 3.0 49.9 + - + +
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Residues in contact with LEU1071 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1026B VAL* 4.1 20.5 - - + +
1029B ALA* 4.9 4.9 - - + -
1030B ILE* 3.7 44.5 - - + +
1033B TRP* 5.0 10.3 - - + -
1067B VAL* 2.9 38.5 + - + +
1068B PHE* 3.9 4.3 - - - +
1070B LEU* 1.3 79.0 - - + +
1072B CYS* 1.3 57.8 + - - +
1074B LEU* 3.7 22.1 - - + +
1075B GLY* 2.9 28.4 + - - -
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Residues in contact with CYS1072 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552B ILE* 3.5 32.3 - - + +
553B ALA* 5.5 0.6 + - - +
555B VAL* 6.4 0.2 - - - -
556B LEU* 3.6 45.5 - - + -
1030B ILE* 3.8 8.7 - - - -
1068B PHE* 3.0 46.9 + - - +
1069B THR 4.0 2.7 - - - +
1070B LEU 3.2 0.4 - - - -
1071B LEU* 1.3 76.9 - - - +
1073B SER* 1.3 57.8 + - - +
1075B GLY 4.2 0.4 - - - -
1076B ILE* 3.5 15.6 + - - +
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Residues in contact with SER1073 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1069B THR 3.6 9.4 + - - -
1070B LEU* 3.2 9.0 + - - -
1071B LEU 3.2 0.2 - - - -
1072B CYS* 1.3 76.1 - - - +
1074B LEU* 1.3 66.2 + - - +
1075B GLY 3.2 1.3 - - - -
1076B ILE* 3.1 17.5 - - - +
1077B VAL* 3.0 31.9 + - - +
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Residues in contact with LEU1074 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1026B VAL* 4.3 14.6 - - + -
1070B LEU* 3.0 40.9 + - + +
1071B LEU* 3.7 26.0 - - + +
1073B SER* 1.3 77.2 - - - +
1075B GLY* 1.3 62.7 + - - +
1077B VAL* 3.2 7.0 + - + +
1078B LEU* 3.0 44.7 + - + +
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Residues in contact with GLY1075 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552B ILE* 4.2 14.6 - - - -
1023B LYS* 4.0 10.7 - - - +
1026B VAL* 4.1 14.1 - - - +
1071B LEU 2.9 15.6 + - - -
1072B CYS* 4.2 0.9 - - - -
1073B SER 3.2 0.2 - - - -
1074B LEU* 1.3 76.9 - - - +
1076B ILE* 1.3 56.9 + - - +
1078B LEU* 3.4 3.8 + - - +
1079B CYS* 3.0 30.7 + - - +
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Residues in contact with ILE1076 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545B PHE* 4.9 8.7 - - + -
548B THR* 5.0 2.0 - - - -
549B ALA* 3.7 37.0 - - + +
552B ILE* 3.6 25.8 - - + -
553B ALA* 5.3 1.3 - - + +
1072B CYS 3.5 13.9 + - - +
1073B SER* 3.1 29.3 + - - +
1075B GLY* 1.3 72.3 - - - +
1077B VAL* 1.3 70.8 + - + +
1079B CYS* 4.0 4.4 - - - +
1080B LEU* 3.0 27.3 + - - +
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Residues in contact with VAL1077 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1073B SER* 3.0 26.9 + - - +
1074B LEU* 3.6 9.0 - - + +
1076B ILE* 1.3 81.9 - - + +
1078B LEU* 1.3 72.9 + - + +
1080B LEU* 3.4 7.9 + - - +
1081B VAL* 3.0 36.4 + - + +
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Residues in contact with LEU1078 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1018B PHE* 5.9 0.9 - - + -
1019B SER* 4.6 11.9 - - - +
1022B LEU* 3.6 41.3 - - + +
1023B LYS* 3.8 21.5 - - + +
1026B VAL* 5.0 6.1 - - + -
1074B LEU* 3.0 46.1 + - + +
1075B GLY* 3.9 2.2 - - - +
1077B VAL* 1.3 86.8 - - + +
1079B CYS* 1.3 58.8 + - - +
1081B VAL* 3.3 10.5 + - + +
1082B THR* 3.0 33.1 + - - +
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Residues in contact with CYS1079 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544B ILE* 5.1 3.8 - - - -
545B PHE* 6.1 0.4 - - - -
548B THR* 3.2 44.4 - - + -
1023B LYS* 3.7 21.9 - - + +
1075B GLY 3.0 17.4 + - - +
1076B ILE 4.0 1.8 - - - +
1077B VAL 3.3 0.2 - - - -
1078B LEU* 1.3 74.3 - - - +
1080B LEU* 1.3 63.9 + - - +
1082B THR* 2.3 29.7 + - - -
1083B SER* 3.0 20.3 + - - -
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Residues in contact with LEU1080 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541B SER* 4.9 2.7 - - - +
542B ILE* 6.0 0.4 - - - -
545B PHE* 3.5 60.5 - - + +
548B THR* 5.9 0.2 - - - -
1076B ILE 3.0 17.8 + - - +
1077B VAL* 3.7 7.0 - - - +
1079B CYS* 1.3 75.5 - - - +
1081B VAL* 1.3 68.0 + - + +
1083B SER* 3.3 5.9 + - - -
1084B VAL* 3.1 46.8 + - + +
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Residues in contact with VAL1081 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1015B LEU* 4.3 7.0 - - + -
1019B SER* 3.8 20.0 - - - +
1077B VAL* 3.0 27.3 + - + +
1078B LEU* 3.5 13.0 - - + +
1080B LEU* 1.3 80.6 - - + +
1082B THR* 1.3 63.4 + - - +
1084B VAL* 3.4 5.5 + - - +
1085B THR* 3.0 34.6 + - - +
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Residues in contact with THR1082 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1016B LEU* 5.2 2.2 - - - +
1019B SER* 3.4 40.8 - - - +
1020B GLN* 3.6 28.7 + - + +
1023B LYS* 4.5 4.0 - - + +
1078B LEU 3.0 20.8 + - - +
1079B CYS* 2.3 36.0 + - - -
1081B VAL* 1.3 76.7 - - - +
1083B SER* 1.3 66.8 + - - +
1085B THR* 3.2 4.2 + - - -
1086B VAL* 3.0 28.8 + - - +
1141B GLU* 5.0 1.9 + - - -
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Residues in contact with SER1083 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541B SER* 3.9 14.4 - - - -
544B ILE* 3.2 41.0 - - - +
545B PHE 5.0 0.7 - - - -
1079B CYS* 3.0 17.1 + - - -
1080B LEU* 3.8 6.0 - - - -
1082B THR* 1.3 78.3 + - - +
1084B VAL* 1.3 64.9 + - - +
1086B VAL* 3.2 8.2 + - - +
1087B GLU* 3.1 27.5 + - - +
1141B GLU* 5.1 8.5 + - - -
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Residues in contact with VAL1084 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541B SER* 3.2 21.8 - - - +
1080B LEU* 3.1 34.1 + - + +
1081B VAL* 3.8 6.5 - - - +
1083B SER* 1.3 76.3 - - - +
1085B THR* 1.3 65.0 + - - +
1087B GLU* 3.3 2.8 + - - +
1088B TRP* 3.1 31.7 + - + +
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Residues in contact with THR1085 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1012B LEU* 3.5 31.6 - - + +
1015B LEU* 3.5 22.5 - - + +
1016B LEU* 3.7 23.3 - - + +
1019B SER* 5.8 0.2 - - - -
1081B VAL* 3.0 20.2 + - - +
1082B THR* 3.7 4.7 - - - -
1084B VAL* 1.3 78.3 - - - +
1086B VAL* 1.3 62.2 + - - +
1088B TRP* 3.3 7.4 + - + +
1089B THR* 3.0 29.5 + - - +
----------------------------------------------------------
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Residues in contact with VAL1086 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1016B LEU* 3.6 32.3 - - + -
1020B GLN* 4.1 4.5 - - - +
1082B THR 3.0 18.1 + - - +
1083B SER* 3.2 5.8 + - - +
1085B THR* 1.3 75.8 - - - +
1087B GLU* 1.3 68.2 + - + +
1089B THR* 3.2 4.2 + - - -
1090B GLY* 3.0 19.6 + - - -
1137B PRO* 4.3 16.2 - - + +
1140B LEU* 5.5 7.6 - - + -
1141B GLU* 3.2 47.8 - - + +
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Residues in contact with GLU1087 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
536B PHE* 5.9 1.4 - - - -
537B ALA* 3.7 32.1 - - + +
540B THR* 3.2 28.3 + - - -
541B SER* 3.9 14.7 + - - +
544B ILE* 5.4 4.5 - - - +
1083B SER* 3.1 14.5 + - - +
1084B VAL 3.3 6.3 + - - +
1086B VAL* 1.3 79.7 - - + +
1088B TRP* 1.3 64.1 + - + +
1090B GLY* 3.2 2.7 + - - -
1091B LEU* 3.1 28.3 + - - +
1137B PRO* 4.2 21.7 - - - +
1138B SER* 6.1 0.3 - - - -
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Residues in contact with TRP1088 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
534B ARG* 5.9 4.7 - - - -
538B VAL* 5.7 10.3 - - + -
1012B LEU* 4.1 17.9 - - + +
1084B VAL* 3.1 21.9 + - + +
1085B THR* 3.6 10.8 - - + +
1087B GLU* 1.3 77.2 - - + +
1089B THR* 1.3 63.3 + - - +
1091B LEU* 3.3 19.7 + - + +
1092B LYS* 3.1 61.9 + - + +
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Residues in contact with THR1089 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1004B TYR* 5.4 4.5 - - + +
1008B ALA* 4.0 29.6 - - + +
1012B LEU* 4.1 21.4 + - - +
1013B LEU* 5.2 6.3 - - + -
1016B LEU* 3.9 18.9 - - + +
1085B THR* 3.0 15.6 + - - +
1086B VAL 3.5 8.3 - - - -
1088B TRP* 1.3 77.1 - - - +
1090B GLY* 1.3 63.3 + - - +
1092B LYS* 3.3 6.8 + - - +
1093B VAL* 3.0 27.4 + - + +
1140B LEU* 5.8 6.3 - - + -
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Residues in contact with GLY1090 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1086B VAL 3.0 14.7 + - - -
1087B GLU 3.2 2.9 + - - -
1089B THR* 1.3 78.2 - - - +
1091B LEU* 1.3 63.2 + - - +
1093B VAL* 3.3 6.1 + - - +
1094B ALA* 3.0 24.0 + - - +
1132B ILE* 5.3 3.7 - - - +
1136B ILE* 5.0 9.1 - - - +
1137B PRO* 4.9 20.4 - - - -
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Residues in contact with LEU1091 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
530B MET* 4.6 13.6 - - - +
533B LEU* 4.1 26.5 - - + +
534B ARG* 3.9 28.5 - - + +
537B ALA* 3.9 23.3 - - + -
538B VAL* 6.1 2.5 - - + -
1087B GLU 3.1 19.0 + - - +
1088B TRP* 3.3 21.3 + - + +
1090B GLY* 1.3 75.9 - - - +
1092B LYS* 1.3 63.9 + - + +
1094B ALA* 3.2 7.7 + - + +
1095B LYS* 3.1 26.7 + - - +
1133B ASP 6.1 0.7 - - - +
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Residues in contact with LYS1092 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1007B SER* 4.6 12.1 - - - +
1008B ALA 4.5 4.9 - - - +
1012B LEU* 3.5 26.7 - - + -
1088B TRP* 3.1 48.6 + - + +
1089B THR* 3.3 4.9 + - - +
1091B LEU* 1.3 77.3 - - + +
1093B VAL* 1.3 64.8 + - - +
1095B LYS* 3.4 26.1 + - - +
1096B ARG* 3.0 27.6 + - - +
----------------------------------------------------------
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Residues in contact with VAL1093 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1004B TYR* 3.4 43.7 - - + +
1007B SER* 4.2 7.9 - - - +
1008B ALA* 3.9 30.7 - - + +
1089B THR* 3.0 20.5 + - + +
1090B GLY* 3.7 5.8 - - - +
1092B LYS* 1.3 74.3 - - - +
1094B ALA* 1.3 64.9 + - - +
1096B ARG 4.0 0.2 - - - -
1097B LEU* 3.0 43.6 + - + +
1132B ILE* 4.4 10.3 - - + -
1136B ILE* 5.9 2.7 - - + -
----------------------------------------------------------
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Residues in contact with ALA1094 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526B ARG* 4.8 2.3 + - - -
530B MET* 4.8 11.0 - - + -
533B LEU* 5.2 2.7 - - + -
1090B GLY 3.0 13.6 + - - +
1091B LEU* 3.2 12.3 + - + +
1093B VAL* 1.3 77.9 - - - +
1095B LYS* 1.3 64.3 + - - +
1097B LEU* 3.4 3.0 + - - +
1098B HIS* 3.0 22.9 + - - +
1132B ILE* 4.2 13.7 - - + +
1133B ASP* 3.1 31.6 - - - +
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Residues in contact with LYS1095 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526B ARG* 6.3 1.3 - - + -
530B MET* 3.6 35.2 - - + -
1091B LEU* 3.1 10.4 + - - +
1092B LYS* 3.7 33.4 + - - +
1094B ALA* 1.3 79.5 - - - +
1096B ARG* 1.3 75.4 + - - +
1098B HIS* 3.3 4.7 + - - +
1099B ARG* 3.0 47.7 + - + +
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Residues in contact with ARG1096 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1007B SER* 3.2 34.0 - - - +
1092B LYS 3.0 12.8 + - - +
1095B LYS* 1.3 89.0 - - + +
1097B LEU* 1.3 64.0 + - + +
1099B ARG* 3.9 11.4 - - - +
1100B SER* 3.0 29.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU1097 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003B LYS 5.5 0.4 - - - +
1004B TYR* 5.0 2.9 - - + -
1007B SER* 4.1 20.4 - - - +
1093B VAL* 3.0 38.0 + - + +
1094B ALA* 3.7 3.8 - - - +
1096B ARG* 1.3 78.5 - - + +
1098B HIS* 1.3 57.5 + - - +
1100B SER* 2.5 23.1 + - - +
1101B LEU* 2.9 17.0 + - - +
1132B ILE* 3.6 30.7 - - + -
1312B VAL* 4.5 15.9 - - + -
1315B ILE* 4.7 17.9 - - + +
1316B HIS* 4.6 15.9 - - + +
1319B LEU* 5.1 4.2 - - + +
----------------------------------------------------------
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Residues in contact with HIS1098 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495B ARG* 4.2 9.8 + - - -
522B VAL* 4.5 3.7 - - + +
523B GLU* 5.2 4.4 + - - -
526B ARG* 3.1 62.0 + - + +
1094B ALA 3.0 15.9 + - - +
1095B LYS* 3.9 4.9 - - - +
1096B ARG 3.3 0.2 - - - -
1097B LEU* 1.3 77.2 - - - +
1099B ARG* 1.3 69.1 + - - +
1101B LEU* 3.1 6.1 + - + +
1102B LEU* 3.0 55.4 + - + +
1125B PHE* 3.9 27.1 - + - -
1129B CYS* 4.5 11.4 - - - -
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Residues in contact with ARG1099 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
523B GLU* 2.8 34.8 + - - +
526B ARG* 6.3 0.7 - - + -
527B ARG* 4.0 24.7 - - - +
1095B LYS* 3.0 36.4 + - + +
1096B ARG* 3.9 12.8 - - - +
1098B HIS* 1.3 82.0 - - - +
1100B SER* 1.3 62.7 + - - +
1102B LEU* 3.6 3.6 + - - +
1103B ASN* 3.4 29.4 + - - +
----------------------------------------------------------
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Residues in contact with SER1100 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1096B ARG* 3.0 20.6 + - - +
1097B LEU* 2.5 27.9 + - - +
1099B ARG* 1.3 78.0 - - - +
1101B LEU* 1.3 60.1 + - - -
1103B ASN* 3.8 2.4 - - - +
1104B ARG* 2.9 26.3 + - - +
1319B LEU* 3.8 22.1 - - - +
----------------------------------------------------------
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Residues in contact with LEU1101 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1097B LEU 2.9 17.6 + - - +
1098B HIS* 3.1 7.6 + - - +
1100B SER* 1.3 77.2 + - - +
1102B LEU* 1.3 61.7 + - - +
1104B ARG* 3.2 1.8 + - + +
1105B ILE* 3.0 35.8 + - + +
1125B PHE* 3.5 45.3 - - + -
1129B CYS* 4.5 9.6 - - - -
1315B ILE* 3.8 29.6 - - + -
1318B LEU* 3.8 29.6 - - + -
1319B LEU* 3.6 18.2 - - + -
----------------------------------------------------------
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Residues in contact with LEU1102 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499B THR* 5.5 3.6 - - + +
502B MET* 6.1 7.4 - - + -
519B CYS* 5.5 6.7 - - + +
522B VAL* 3.5 28.5 - - + -
523B GLU* 5.3 7.6 - - - +
1098B HIS* 3.0 40.6 + - + +
1099B ARG* 4.3 3.6 - - - +
1101B LEU* 1.3 77.1 - - - +
1103B ASN* 1.3 62.8 + - - +
1105B ILE* 3.2 9.7 + - + +
1106B ILE* 2.9 36.9 + - + +
1125B PHE* 3.6 33.7 - - + -
----------------------------------------------------------
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Residues in contact with ASN1103 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519B CYS* 5.3 7.1 - - - +
1099B ARG* 3.4 18.1 + - - +
1100B SER* 3.8 2.2 - - - +
1101B LEU 3.4 0.2 - - - -
1102B LEU* 1.3 78.5 - - - +
1104B ARG* 1.3 62.2 + - - +
1106B ILE* 4.0 13.8 - - - +
1107B LEU* 3.3 36.3 + - + +
----------------------------------------------------------
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Residues in contact with ARG1104 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1100B SER 2.9 18.6 + - - +
1101B LEU* 3.2 4.7 + - + +
1103B ASN* 1.3 76.8 - - - +
1105B ILE* 1.3 69.6 + - + +
1107B LEU* 3.8 10.1 + - - +
1108B ALA* 4.0 9.7 + - - +
1318B LEU* 5.5 0.7 - - + +
1319B LEU* 3.7 35.7 - - + +
1321B THR 5.4 0.6 - - - +
1322B GLU* 4.5 8.8 - - - +
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Residues in contact with ILE1105 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
503B LEU* 4.3 14.4 - - + -
506B MET* 5.4 1.6 - - + -
1101B LEU* 3.0 28.6 + - + +
1102B LEU* 3.7 12.1 - - + +
1104B ARG* 1.3 78.9 - - + +
1106B ILE* 1.3 65.7 + - + +
1108B ALA* 3.3 9.4 - - - +
1112B PHE* 4.5 17.9 - - + -
1113B PHE* 3.1 40.7 - - + -
1121B ILE* 5.1 15.0 - - + -
1125B PHE* 5.2 6.7 - - + -
1318B LEU* 3.6 29.2 - - + +
----------------------------------------------------------
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Residues in contact with ILE1106 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502B MET* 3.9 22.4 - - + -
506B MET* 3.9 18.6 - - + +
509B LEU* 4.7 0.4 - - + -
510B LYS* 2.7 32.7 + - - +
515B GLU* 3.7 31.1 - - + +
519B CYS* 3.5 30.7 - - - -
1102B LEU* 2.9 24.6 + - + +
1103B ASN* 3.9 11.6 + - - +
1104B ARG 3.4 0.2 - - - -
1105B ILE* 1.3 79.9 - - + +
1107B LEU* 1.3 66.1 + - + +
1108B ALA 3.2 1.1 + - - -
----------------------------------------------------------
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Residues in contact with LEU1107 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
510B LYS* 4.6 2.0 - - - +
515B GLU* 5.5 1.8 - - - +
1103B ASN* 3.3 25.6 + - + +
1104B ARG* 3.8 6.7 + - - +
1105B ILE 3.3 0.6 - - - -
1106B ILE* 1.3 89.9 - - + +
1108B ALA* 1.4 55.4 + - - -
1109B PRO* 4.3 0.2 - - - +
1322B GLU 4.3 4.9 - - - +
1324B GLU 3.1 26.8 - - - +
1325B SER* 3.2 6.8 + - - +
1326B TYR* 5.4 16.6 - - + -
1327B GLU* 6.3 3.1 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il