Contacts of the helix formed by residues 1167 - 1210 (chain B) in PDB entry 5YWB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA1167 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1163B VAL 4.3 0.4 + - - +
1164B PHE* 2.7 25.4 + - + +
1166B VAL* 1.3 73.6 - - + +
1168B LEU* 1.3 58.7 + - - +
1169B LEU 3.6 0.7 - - - -
1170B PRO* 3.8 12.3 - - - +
1171B LEU* 4.2 10.9 + - - +
1262B ILE* 3.6 30.6 - - + +
1266B THR* 6.2 2.0 - - + -
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Residues in contact with LEU1168 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1154B LEU* 4.0 35.2 - - + -
1164B PHE* 3.3 32.6 + - + +
1165B LEU* 4.2 25.7 - - + +
1166B VAL 3.5 0.6 - - - -
1167B ALA* 1.3 79.8 - - - +
1169B LEU* 1.3 61.2 + - - +
1171B LEU* 3.3 24.4 + - + +
1172B ALA* 2.9 31.1 + - + +
1259B VAL* 5.4 0.9 - - + -
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Residues in contact with LEU1169 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1165B LEU 4.8 7.1 + - - +
1166B VAL 5.4 1.3 - - - +
1168B LEU* 1.3 80.3 - - - +
1170B PRO* 1.3 67.4 - - + +
1172B ALA* 3.3 6.7 + - + +
1173B VAL* 2.9 51.7 + - + +
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Residues in contact with PRO1170 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1166B VAL 4.0 11.2 - - - +
1167B ALA* 3.8 15.5 - - - +
1168B LEU 3.6 2.5 - - - -
1169B LEU* 1.3 99.3 - - + +
1171B LEU* 1.3 62.7 + - - +
1173B VAL* 3.2 5.2 + - + +
1174B VAL* 3.0 34.4 + - + +
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Residues in contact with LEU1171 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1167B ALA 4.2 10.2 + - - +
1168B LEU* 3.3 24.8 + - + +
1170B PRO* 1.3 79.9 - - - +
1172B ALA* 1.3 63.2 + - - +
1174B VAL* 4.0 4.0 - - - +
1175B CYS* 2.9 28.5 + - + +
1255B ILE* 3.6 53.4 - - + +
1258B CYS* 4.7 4.9 - - + -
1259B VAL* 3.9 35.2 - - + +
1295B LEU* 5.9 2.9 - - + -
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Residues in contact with ALA1172 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1168B LEU* 2.9 21.4 + - + +
1169B LEU* 3.3 9.4 + - + +
1171B LEU* 1.3 77.5 - - - +
1173B VAL* 1.3 60.1 + - + +
1175B CYS* 3.9 4.5 - - - +
1176B TYR* 2.8 32.3 + - - +
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Residues in contact with VAL1173 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1169B LEU* 2.9 41.0 + - + +
1170B PRO* 3.8 6.7 - - + +
1172B ALA* 1.3 77.3 - - + +
1174B VAL* 1.3 67.1 + - + +
1176B TYR* 3.3 5.9 + - - +
1177B PHE* 3.0 50.6 + - + -
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Residues in contact with VAL1174 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1170B PRO* 3.0 20.6 + - + +
1171B LEU* 4.1 2.2 - - - +
1173B VAL* 1.3 79.9 - - + +
1175B CYS* 1.3 62.2 + - - +
1177B PHE* 3.3 7.6 + - + +
1178B ILE* 3.0 27.7 + - + +
1255B ILE* 4.6 18.4 - - + -
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Residues in contact with CYS1175 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1171B LEU* 2.9 20.6 + - + +
1172B ALA* 3.9 4.7 - - - +
1174B VAL* 1.3 77.9 - - - +
1176B TYR* 1.3 57.1 + - - +
1178B ILE* 3.1 10.6 - - - +
1179B GLN* 2.9 36.1 + - - +
1252B MET* 3.5 38.1 - - - -
1255B ILE* 4.9 14.1 - - + +
1295B LEU* 6.1 0.7 - - - -
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Residues in contact with TYR1176 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1172B ALA 2.8 20.1 + - - +
1173B VAL* 3.6 6.7 - - - +
1175B CYS* 1.3 77.4 - - - +
1177B PHE* 1.3 69.6 + + - +
1179B GLN* 3.3 5.8 + - - +
1180B LYS* 2.9 40.1 + - + +
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Residues in contact with PHE1177 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1173B VAL* 3.0 44.7 + - + +
1174B VAL* 3.8 6.7 - - - +
1176B TYR* 1.3 88.4 - + - +
1178B ILE* 1.3 57.1 + - - +
1180B LYS* 3.3 15.9 + - + +
1181B TYR* 3.0 44.6 + + + -
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Residues in contact with ILE1178 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1174B VAL* 3.0 20.5 + - + +
1175B CYS* 3.1 22.2 - - + +
1177B PHE* 1.3 76.7 - - - +
1179B GLN* 1.3 57.5 + - - +
1181B TYR* 3.3 6.9 + - + +
1182B PHE* 2.9 28.3 + - - +
1247B TRP* 3.7 20.4 - - + -
1248B LEU* 4.5 13.7 - - + -
1251B ARG* 3.4 53.8 - - + +
1252B MET* 4.8 9.0 - - - -
1255B ILE* 5.9 4.0 - - + -
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Residues in contact with GLN1179 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1175B CYS* 2.9 23.4 + - - +
1176B TYR* 3.7 5.6 - - + +
1178B ILE* 1.3 78.7 - - + +
1180B LYS* 1.3 57.1 + - - +
1182B PHE* 3.2 21.5 + - - +
1183B ARG* 2.9 42.1 + - - +
1248B LEU* 3.8 24.4 - - - +
1252B MET* 5.1 6.6 - - - +
1299B VAL* 4.4 15.3 - - - +
1302B LEU* 5.7 6.5 - - - +
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Residues in contact with LYS1180 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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241B HIS* 5.7 7.5 - - + -
1176B TYR* 2.9 30.6 + - + +
1177B PHE* 3.6 19.7 - - + +
1179B GLN* 1.3 76.8 - - - +
1181B TYR* 1.3 69.3 + - + +
1183B ARG* 3.3 23.3 + - + +
1184B VAL* 3.8 12.6 + - + +
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Residues in contact with TYR1181 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
237B ILE* 4.4 28.5 - - + +
238B LYS* 5.9 8.1 - - + -
241B HIS* 5.0 30.0 - + + -
1177B PHE* 3.0 38.6 + + + +
1178B ILE* 3.7 8.7 - - + +
1179B GLN 3.3 0.2 - - - -
1180B LYS* 1.3 83.1 - - + +
1182B PHE* 1.3 62.2 + - - +
1184B VAL* 3.4 20.2 - - - +
1185B ALA* 3.8 7.8 + - - +
1247B TRP* 5.6 0.2 - - + -
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Residues in contact with PHE1182 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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237B ILE* 4.9 1.1 - - - +
1178B ILE 2.9 17.2 + - - +
1179B GLN* 3.2 17.0 + - - +
1181B TYR* 1.3 76.2 - - - +
1183B ARG* 1.3 64.1 + - - +
1185B ALA* 3.5 5.3 + - + -
1186B SER* 2.9 55.1 + - - -
1244B ALA* 3.7 34.8 - - + -
1245B ASN* 3.6 20.0 - - - -
1247B TRP* 4.3 14.4 - + + -
1248B LEU* 3.4 47.6 - - + -
1303B ALA* 5.7 9.6 - - + -
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Residues in contact with ARG1183 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1179B GLN* 2.9 30.5 + - - +
1180B LYS* 3.7 14.4 - - - +
1181B TYR 3.3 0.8 - - - -
1182B PHE* 1.3 84.1 - - + +
1184B VAL* 1.3 62.4 + - + +
1186B SER* 3.6 3.1 - - - -
1187B ARG* 2.9 32.9 + - + +
1306B GLU* 5.2 13.6 + - - +
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Residues in contact with VAL1184 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240B ALA 6.2 0.7 - - - -
241B HIS* 3.4 40.2 - - + +
1180B LYS* 3.8 10.5 + - + +
1181B TYR 3.4 15.3 - - - +
1183B ARG* 1.3 79.1 - - + +
1185B ALA* 1.3 66.9 + - + +
1187B ARG* 3.3 7.0 + - - +
1188B ASP* 3.0 24.3 + - - +
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Residues in contact with ALA1185 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236B PHE* 5.5 6.1 - - + -
237B ILE* 4.5 19.5 - - + +
240B ALA* 4.5 16.4 - - + -
245B ILE* 4.5 5.3 - - + +
1181B TYR 4.2 8.3 - - - +
1182B PHE* 3.5 8.9 + - + +
1183B ARG 3.4 0.2 - - - -
1184B VAL* 1.3 81.8 - - + +
1186B SER* 1.3 58.0 + - - +
1188B ASP* 3.3 7.0 + - - +
1189B LEU* 2.9 37.0 + - + +
1244B ALA* 5.7 5.2 - - + -
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Residues in contact with SER1186 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1182B PHE* 2.9 52.2 + - - -
1183B ARG* 3.6 4.5 - - - -
1185B ALA* 1.3 73.9 - - - +
1187B ARG* 1.3 64.2 + - - +
1189B LEU* 3.3 7.3 + - - +
1190B GLN* 2.9 44.9 + - - +
1241B LEU* 4.1 7.2 - - - +
1244B ALA* 5.7 1.5 - - - +
1245B ASN* 5.3 0.7 + - - -
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Residues in contact with ARG1187 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1183B ARG* 2.9 21.7 + - + +
1184B VAL* 3.7 6.7 - - - +
1186B SER* 1.3 74.7 + - - +
1188B ASP* 1.3 63.7 + - - +
1190B GLN* 3.4 23.2 + - - +
1191B GLN* 3.0 35.0 + - + +
1306B GLU* 2.8 35.3 + - - +
1307B ILE* 6.4 0.4 - - - +
1310B GLY* 6.0 4.2 - - - -
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Residues in contact with ASP1188 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240B ALA* 5.2 1.4 - - - +
244B PRO* 4.0 8.3 - - - +
245B ILE* 3.0 57.3 + - + +
1184B VAL 3.0 17.8 + - - +
1185B ALA* 3.6 5.8 - - - +
1186B SER 3.2 0.2 - - - -
1187B ARG* 1.3 77.1 - - - +
1189B LEU* 1.3 58.5 + - - +
1191B GLN* 3.3 7.4 + - - +
1192B LEU* 2.9 29.5 + - - +
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Residues in contact with LEU1189 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236B PHE* 4.4 23.8 - - + -
245B ILE* 4.4 16.6 - - + -
250B ILE* 5.3 3.4 - - + -
1185B ALA 2.9 20.0 + - - +
1186B SER* 3.8 0.9 - - - +
1188B ASP* 1.3 76.0 - - - +
1190B GLN* 1.3 59.1 + - - +
1192B LEU* 3.4 11.5 + - + +
1193B ASP* 2.9 29.1 + - - +
1237B ALA* 5.0 5.9 - - - +
1240B PHE* 3.3 48.2 - - + +
1241B LEU* 3.7 23.9 - - + +
1244B ALA* 3.8 18.2 - - + -
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Residues in contact with GLN1190 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1186B SER* 2.9 34.8 + - - +
1187B ARG* 3.7 32.6 + - - +
1189B LEU* 1.3 76.5 - - - +
1191B GLN* 1.3 63.1 + - - +
1193B ASP* 3.2 8.5 + - - +
1194B ASP* 3.0 23.2 + - - +
1241B LEU* 3.7 22.5 - - + +
1303B ALA* 6.3 0.2 - - - +
1306B GLU* 5.4 4.0 + - - +
1307B ILE* 3.6 37.3 - - + +
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Residues in contact with GLN1191 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1187B ARG* 3.0 28.1 + - + +
1188B ASP* 3.7 8.1 - - - +
1190B GLN* 1.3 77.2 - - - +
1192B LEU* 1.3 56.4 + - - +
1194B ASP* 3.3 8.6 + - - +
1195B THR* 3.0 30.2 + - - -
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Residues in contact with LEU1192 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
245B ILE* 4.3 18.2 - - + +
246B ASP* 3.9 35.7 - - - +
247B LEU* 3.9 16.8 - - + +
250B ILE* 5.5 5.8 - - + -
1188B ASP* 2.9 19.1 + - - +
1189B LEU* 3.8 12.3 - - + +
1191B GLN* 1.3 71.6 - - - +
1193B ASP* 1.3 66.2 + - - +
1195B THR* 3.1 16.6 - - + +
1196B THR* 3.0 45.0 + - + +
1237B ALA* 3.7 20.2 - - + -
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Residues in contact with ASP1193 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388B ARG* 5.8 1.0 + - - -
1189B LEU 2.9 14.3 + - - +
1190B GLN* 3.2 13.2 + - - +
1192B LEU* 1.3 77.1 - - - +
1194B ASP* 1.3 57.6 + - - +
1196B THR* 3.1 7.2 + - - -
1197B GLN* 2.9 43.3 + - - +
1234B ASN* 4.1 13.5 - - - +
1237B ALA* 4.2 13.4 - - + +
1238B SER* 4.7 11.7 + - - -
1241B LEU* 4.4 17.8 - - + +
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Residues in contact with ASP1194 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1190B GLN 3.0 12.0 + - - +
1191B GLN* 3.3 11.4 + - - +
1193B ASP* 1.3 77.1 - - - +
1195B THR* 1.3 58.2 + - - +
1197B GLN* 3.1 11.8 + - - +
1198B LEU* 3.1 35.4 + - - +
1314B ARG* 4.3 21.8 + - - -
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Residues in contact with THR1195 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247B LEU* 5.9 2.2 - - + -
1191B GLN* 3.0 12.9 + - - +
1192B LEU* 3.1 33.2 - - + +
1194B ASP* 1.3 76.5 - - - +
1196B THR* 1.3 63.6 + - + +
1198B LEU* 4.8 2.4 - - - +
1199B PRO* 3.2 21.8 - - - +
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Residues in contact with THR1196 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247B LEU* 3.8 27.4 - - + -
1192B LEU* 3.0 32.7 + - + +
1193B ASP* 3.1 12.1 + - - -
1195B THR* 1.3 82.3 - - + +
1197B GLN* 1.3 62.2 + - - +
1198B LEU 3.3 0.4 - - - -
1199B PRO* 3.2 13.5 - - - +
1200B LEU* 3.9 10.6 + - - +
1230B TYR* 5.4 4.9 - - - +
1233B SER* 4.9 4.7 - - - +
1234B ASN* 4.1 23.5 + - - +
1237B ALA* 3.9 13.4 - - + +
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Residues in contact with GLN1197 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388B ARG* 5.6 5.2 + - - +
422B ALA* 6.1 3.0 - - - +
425B THR* 5.4 5.9 - - - +
426B ASN* 4.8 12.5 + - - +
1193B ASP* 2.9 38.1 + - - +
1194B ASP* 3.1 12.4 + - - +
1196B THR* 1.3 76.9 + - - +
1198B LEU* 1.3 65.4 + - - +
1199B PRO 3.6 0.2 - - - -
1200B LEU* 3.8 3.5 + - + +
1201B LEU* 3.6 36.0 + - + +
1234B ASN* 4.2 23.1 - - - +
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Residues in contact with LEU1198 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
825B GLU* 5.7 4.7 - - - +
1119B GLY 6.0 1.6 - - - -
1120B SER* 5.6 15.0 - - - +
1123B ASN* 4.9 15.9 - - + +
1194B ASP* 3.1 18.3 + - - +
1195B THR* 4.8 2.2 - - - +
1197B GLN* 1.3 75.9 - - - +
1199B PRO* 1.3 69.9 - - + +
1201B LEU* 3.2 9.9 + - + +
1202B SER* 3.1 29.9 + - - +
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Residues in contact with PRO1199 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
781B ASN* 5.0 6.5 - - - +
1195B THR 3.2 23.8 - - - +
1196B THR* 3.2 11.4 - - - +
1198B LEU* 1.3 93.9 - - + +
1200B LEU* 1.3 55.9 + - - +
1202B SER* 3.6 9.5 - - - +
1203B HIS* 2.9 30.1 + - - +
1230B TYR* 4.0 26.1 - - + -
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Residues in contact with LEU1200 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392B GLN* 4.2 24.5 - - + +
421B VAL* 5.8 0.4 - - + -
1196B THR 3.9 9.0 + - - +
1197B GLN* 3.8 8.3 + - + +
1198B LEU 3.2 0.8 + - - -
1199B PRO* 1.3 80.8 - - - +
1201B LEU* 1.3 66.0 + - + +
1203B HIS* 3.3 7.2 + - + +
1204B PHE* 2.9 35.7 + - + +
1227B LEU* 4.1 26.5 - - + -
1230B TYR* 4.4 26.8 - - + +
1231B THR* 4.7 9.4 - - - +
1234B ASN* 3.4 30.7 - - + +
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Residues in contact with LEU1201 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392B GLN* 6.3 0.2 - - - +
418B CYS* 4.2 10.6 - - + +
421B VAL* 4.0 29.8 - - + -
422B ALA* 4.5 24.0 - - + +
1123B ASN* 4.6 18.6 - - - +
1197B GLN* 3.6 33.4 - - + +
1198B LEU* 3.2 9.9 + - + +
1200B LEU* 1.3 82.7 - - + +
1202B SER* 1.3 67.1 + - - +
1204B PHE* 3.3 6.0 + - + +
1205B ALA* 3.0 24.6 + - - +
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Residues in contact with SER1202 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
781B ASN* 3.5 33.9 + - - -
825B GLU* 4.4 15.5 + - - +
1198B LEU* 3.1 22.9 + - - +
1199B PRO* 3.6 8.2 - - - +
1200B LEU 3.3 0.2 - - - -
1201B LEU* 1.3 77.5 - - - +
1203B HIS* 1.3 61.3 + - - +
1205B ALA* 3.4 4.8 + - - +
1206B GLU* 3.0 31.8 + - - +
----------------------------------------------------------
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Residues in contact with HIS1203 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396B TYR* 3.6 12.1 - + - -
781B ASN* 5.6 0.8 - - - +
1199B PRO 2.9 17.4 + - - +
1200B LEU* 3.4 9.6 - - + +
1202B SER* 1.3 75.2 - - - +
1204B PHE* 1.3 65.4 + - - +
1206B GLU* 3.8 8.9 - - - +
1207B THR* 2.9 44.9 + - - -
1223B PHE* 3.7 30.9 - + - -
1226B LYS* 4.1 19.8 + - + +
1227B LEU* 3.4 45.7 - - + +
1230B TYR* 5.3 12.3 - + + -
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Residues in contact with PHE1204 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392B GLN* 4.0 10.5 - - + -
395B ILE* 3.9 12.8 - - + -
396B TYR* 3.8 34.3 - + + -
399B ILE* 3.5 33.2 - - + -
417B ILE* 5.1 1.1 - - + -
418B CYS* 4.2 8.3 - - - -
421B VAL* 3.5 45.3 - - + -
1200B LEU* 2.9 30.9 + - + +
1201B LEU* 3.3 11.9 + - + +
1203B HIS* 1.3 80.0 - - - +
1205B ALA* 1.3 62.6 + - - +
1207B THR* 3.3 3.5 + - - -
1208B VAL* 2.9 30.3 + - + +
1227B LEU* 4.1 12.3 - - + -
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Residues in contact with ALA1205 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414B ALA* 6.0 2.5 - - + -
418B CYS* 3.5 23.5 - - - -
504B ARG* 5.9 4.3 - - - +
1201B LEU 3.0 14.0 + - - +
1202B SER* 3.7 5.8 - - - +
1204B PHE* 1.3 75.4 - - - +
1206B GLU* 1.3 64.8 + - + +
1208B VAL* 3.1 6.2 + - - +
1209B GLU* 3.0 32.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU1206 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
778B TRP* 3.1 26.4 - - + -
779B LEU 3.7 8.9 - - - +
780B LEU* 3.4 14.2 - - - +
781B ASN* 2.7 51.5 + - - +
824B GLY 5.4 0.3 - - - +
825B GLU* 4.9 5.9 - - - +
826B ARG* 4.9 13.3 + - + +
1202B SER* 3.0 23.3 + - - +
1203B HIS* 4.0 6.9 - - - +
1205B ALA* 1.3 78.1 - - + +
1207B THR* 1.3 62.5 + - - +
1209B GLU* 4.6 3.6 - - - +
1210B GLY* 3.0 21.0 + - - -
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Residues in contact with THR1207 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396B TYR* 3.6 31.2 + - + +
399B ILE* 4.6 9.9 - - + -
400B MET* 4.6 13.9 - - + -
778B TRP* 5.2 0.2 - - - -
1203B HIS* 2.9 38.9 + - - -
1204B PHE* 3.7 4.3 - - - -
1206B GLU* 1.3 78.0 - - - +
1208B VAL* 1.3 63.9 + - - +
1210B GLY 3.9 1.0 - - - -
1211B LEU* 3.7 23.9 + - + +
1214B ILE* 4.2 16.9 - - + +
1223B PHE* 4.1 8.8 - - - -
----------------------------------------------------------
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Residues in contact with VAL1208 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399B ILE* 3.8 21.3 - - + -
407B LEU* 3.9 17.0 - - + +
414B ALA* 3.6 35.0 - - + +
417B ILE* 3.7 39.3 - - + -
418B CYS* 5.3 1.1 - - - -
1204B PHE* 2.9 25.0 + - + +
1205B ALA* 3.5 7.0 - - - +
1207B THR* 1.3 77.3 - - - +
1209B GLU* 1.3 61.1 + - - +
1211B LEU* 3.3 23.4 - - + +
----------------------------------------------------------
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Residues in contact with GLU1209 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407B LEU* 4.7 9.1 - - - +
414B ALA* 3.8 24.6 - - + +
504B ARG* 2.9 38.2 + - - -
776B LYS* 6.1 2.7 - - - -
778B TRP* 5.5 7.5 - - + +
826B ARG* 3.8 21.0 - - - +
1205B ALA* 3.0 19.3 + - - +
1206B GLU* 4.4 3.3 - - - +
1208B VAL* 1.3 75.7 - - - +
1210B GLY* 1.3 58.1 + - - +
1211B LEU* 2.9 12.7 + - - +
1212B THR* 4.9 1.4 + - - -
----------------------------------------------------------
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Residues in contact with GLY1210 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
778B TRP* 3.6 37.4 - - - -
1206B GLU 3.0 11.9 + - - -
1207B THR 3.9 4.3 - - - -
1209B GLU* 1.3 75.1 - - - +
1211B LEU* 1.3 62.8 + - - +
1212B THR* 3.5 3.5 + - - -
1213B THR 3.6 4.1 + - - -
1214B ILE* 3.5 23.9 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il