Contacts of the helix formed by residues 1167 - 1210 (chain F) in PDB entry 5YWB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA1167 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1163F VAL 5.5 0.2 - - - +
1164F PHE* 2.7 24.4 + - + +
1166F VAL* 1.3 73.2 - - + +
1168F LEU* 1.3 58.2 + - - -
1169F LEU 3.6 1.1 - - - -
1170F PRO* 3.8 12.2 - - - +
1171F LEU* 4.2 11.1 + - - +
1262F ILE* 3.6 31.2 - - + +
1266F THR* 6.2 1.6 - - + -
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Residues in contact with LEU1168 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1154F LEU* 4.0 33.9 - - + -
1164F PHE* 3.3 33.5 + - + +
1165F LEU* 4.2 27.3 - - + +
1166F VAL 3.5 1.4 - - - -
1167F ALA* 1.3 77.5 - - - +
1169F LEU* 1.3 61.0 + - - +
1170F PRO 3.4 0.2 - - - -
1171F LEU* 3.3 23.7 + - + +
1172F ALA* 2.9 31.3 + - + +
1259F VAL* 5.4 0.7 - - + -
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Residues in contact with LEU1169 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1165F LEU 4.8 6.7 + - - +
1166F VAL 4.8 1.1 + - - +
1168F LEU* 1.3 79.2 - - - +
1170F PRO* 1.3 66.8 - - + +
1172F ALA* 3.3 7.0 + - + +
1173F VAL* 2.9 51.2 + - + +
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Residues in contact with PRO1170 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1166F VAL 4.0 11.2 - - - +
1167F ALA* 3.8 15.3 - - - +
1168F LEU 3.6 2.5 - - - -
1169F LEU* 1.3 99.8 - - + +
1171F LEU* 1.3 62.5 + - - +
1173F VAL* 3.8 5.5 - - + +
1174F VAL* 3.0 34.4 + - + +
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Residues in contact with LEU1171 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1164F PHE* 5.6 0.2 - - + -
1167F ALA 4.2 10.6 + - - +
1168F LEU* 3.3 25.0 + - + +
1170F PRO* 1.3 80.2 - - - +
1172F ALA* 1.3 63.7 + - - +
1174F VAL* 3.9 3.1 - - - +
1175F CYS* 2.9 27.9 + - + +
1255F ILE* 3.6 54.0 - - + +
1258F CYS* 4.7 4.9 - - + -
1259F VAL* 3.9 33.9 - - + +
1295F LEU* 5.9 2.7 - - + -
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Residues in contact with ALA1172 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1168F LEU* 2.9 21.2 + - + +
1169F LEU* 3.3 8.7 + - + +
1171F LEU* 1.3 77.9 - - - +
1173F VAL* 1.3 58.6 + - + +
1175F CYS* 3.8 4.6 - - - +
1176F TYR* 2.8 32.1 + - - +
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Residues in contact with VAL1173 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1169F LEU* 2.9 41.2 + - + +
1170F PRO* 3.8 6.3 - - + +
1172F ALA* 1.3 78.2 - - + +
1174F VAL* 1.3 66.8 + - + +
1176F TYR* 3.3 5.9 + - - +
1177F PHE* 3.0 50.9 + - + -
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Residues in contact with VAL1174 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1170F PRO* 3.0 19.9 + - + +
1171F LEU* 4.1 2.7 - - - +
1173F VAL* 1.3 80.4 - - + +
1175F CYS* 1.3 63.8 + - - +
1177F PHE* 3.3 8.5 + - + +
1178F ILE* 3.0 27.0 + - + +
1255F ILE* 4.6 17.9 - - + -
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Residues in contact with CYS1175 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1171F LEU* 2.9 20.0 + - + +
1172F ALA* 3.9 4.7 - - - +
1174F VAL* 1.3 77.5 - - - +
1176F TYR* 1.3 58.3 + - - +
1178F ILE* 3.1 10.5 - - - +
1179F GLN* 2.9 36.2 + - - +
1252F MET* 3.5 38.1 - - - -
1255F ILE* 4.9 13.9 - - + +
1295F LEU* 6.2 0.2 - - - -
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Residues in contact with TYR1176 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1172F ALA 2.8 20.5 + - - +
1173F VAL* 3.3 7.2 + - - +
1175F CYS* 1.3 77.2 - - - +
1177F PHE* 1.3 68.8 + + + +
1179F GLN* 3.3 5.5 + - - +
1180F LYS* 2.9 40.0 + - + +
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Residues in contact with PHE1177 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1173F VAL* 3.0 44.7 + - + +
1174F VAL* 3.8 7.2 - - + +
1176F TYR* 1.3 87.8 - + - +
1178F ILE* 1.3 57.4 + - - +
1180F LYS* 3.3 15.4 + - + +
1181F TYR* 3.0 47.1 + + + -
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Residues in contact with ILE1178 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1174F VAL* 3.0 20.8 + - + +
1175F CYS* 3.1 21.8 - - + +
1177F PHE* 1.3 78.1 - - - +
1179F GLN* 1.3 57.4 + - + +
1181F TYR* 3.3 6.5 + - + +
1182F PHE* 2.9 28.4 + - - +
1247F TRP* 3.7 19.7 - - + -
1248F LEU* 4.5 14.6 - - + -
1251F ARG* 3.4 54.5 - - + +
1252F MET* 4.8 8.7 - - - -
1255F ILE* 5.9 4.0 - - + -
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Residues in contact with GLN1179 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1175F CYS* 2.9 22.3 + - - +
1176F TYR* 3.7 6.5 - - - +
1178F ILE* 1.3 78.5 - - + +
1180F LYS* 1.3 57.3 + - - +
1182F PHE* 3.2 21.4 + - - +
1183F ARG* 2.9 44.2 + - - +
1248F LEU* 3.8 25.1 - - - +
1252F MET* 5.1 6.2 - - - +
1299F VAL* 4.4 14.2 - - - +
1302F LEU* 5.7 7.3 - - - +
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Residues in contact with LYS1180 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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241F HIS* 5.7 6.8 - - + -
1176F TYR* 2.9 30.2 + - + +
1177F PHE* 3.6 19.3 - - + +
1179F GLN* 1.3 77.0 - - - +
1181F TYR* 1.3 68.1 + - + +
1183F ARG* 3.3 24.2 + - + +
1184F VAL* 3.8 12.4 + - + +
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Residues in contact with TYR1181 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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237F ILE* 4.4 27.0 - - + +
238F LYS* 5.9 7.0 - - + -
241F HIS* 5.0 31.1 - + + -
1177F PHE* 3.0 36.7 + + + +
1178F ILE* 3.7 8.5 - - + +
1180F LYS* 1.3 85.0 - - + +
1182F PHE* 1.3 62.8 + - - +
1184F VAL* 3.4 20.4 - - - +
1185F ALA* 3.8 7.8 + - - +
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Residues in contact with PHE1182 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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237F ILE* 4.9 2.2 - - - +
1178F ILE 2.9 17.2 + - - +
1179F GLN* 3.2 17.4 + - - +
1181F TYR* 1.3 75.6 - - - +
1183F ARG* 1.3 64.4 + - - +
1185F ALA* 3.5 5.8 + - + +
1186F SER* 2.9 56.4 + - - -
1244F ALA* 3.7 34.1 - - + -
1245F ASN* 3.6 20.6 - - - -
1247F TRP* 4.3 13.7 - + + -
1248F LEU* 3.4 46.7 - - + -
1303F ALA* 5.7 9.0 - - + -
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Residues in contact with ARG1183 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1179F GLN* 2.9 30.5 + - - +
1180F LYS* 3.7 13.4 - - - +
1181F TYR 3.3 0.8 - - - -
1182F PHE* 1.3 84.6 - - + +
1184F VAL* 1.3 63.3 + - + +
1186F SER* 3.3 3.5 + - - -
1187F ARG* 2.9 33.1 + - + +
1306F GLU* 5.2 12.9 + - - +
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Residues in contact with VAL1184 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240F ALA* 6.2 0.7 - - + -
241F HIS* 3.4 40.6 - - + +
1180F LYS* 3.8 10.3 + - + +
1181F TYR 3.4 14.6 - - - +
1183F ARG* 1.3 80.1 - - + +
1185F ALA* 1.3 68.0 + - + +
1187F ARG* 3.3 6.1 + - - +
1188F ASP* 3.0 24.7 + - - +
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Residues in contact with ALA1185 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236F PHE* 5.5 6.5 - - + -
237F ILE* 4.5 19.1 - - + +
240F ALA* 4.5 16.6 - - + -
245F ILE* 4.5 5.5 - - + +
1181F TYR 3.8 8.7 + - - +
1182F PHE* 3.5 9.3 + - + +
1183F ARG 3.4 0.2 - - - -
1184F VAL* 1.3 83.4 - - + +
1186F SER* 1.3 56.6 + - - +
1188F ASP* 3.3 6.5 + - - +
1189F LEU* 2.9 36.7 + - + +
1244F ALA* 5.7 5.2 - - + -
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Residues in contact with SER1186 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1182F PHE* 2.9 50.9 + - - -
1183F ARG* 3.6 4.3 - - - -
1185F ALA* 1.3 74.3 - - - +
1187F ARG* 1.3 65.5 + - - +
1189F LEU* 3.3 6.9 + - - +
1190F GLN* 2.9 45.4 + - - +
1241F LEU* 4.1 6.8 - - - +
1244F ALA* 5.7 2.0 - - - +
1245F ASN* 5.3 0.7 + - - -
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Residues in contact with ARG1187 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1183F ARG* 2.9 21.8 + - + +
1184F VAL* 3.7 6.1 - - - +
1186F SER* 1.3 75.7 + - - +
1188F ASP* 1.3 63.5 + - - +
1190F GLN* 3.4 23.0 + - - +
1191F GLN* 3.0 35.7 + - + +
1306F GLU* 2.8 35.2 + - - +
1307F ILE* 6.4 0.4 - - - +
1310F GLY* 6.0 4.2 - - - -
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Residues in contact with ASP1188 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240F ALA* 5.2 1.4 - - - +
244F PRO* 4.0 8.5 - - - +
245F ILE* 3.0 57.8 + - + +
1184F VAL 3.0 17.6 + - - +
1185F ALA* 3.6 4.7 - - - +
1187F ARG* 1.3 77.3 - - - +
1189F LEU* 1.3 58.5 + - - +
1191F GLN* 3.3 6.2 + - - +
1192F LEU* 2.9 30.0 + - - +
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Residues in contact with LEU1189 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236F PHE* 4.4 22.7 - - + -
245F ILE* 4.4 17.3 - - + -
250F ILE* 5.3 3.1 - - + -
1185F ALA* 2.9 20.7 + - + +
1186F SER* 3.8 0.9 - - - +
1188F ASP* 1.3 76.6 - - - +
1190F GLN* 1.3 58.1 + - - +
1192F LEU* 3.4 11.6 + - + +
1193F ASP* 2.9 29.8 + - - +
1237F ALA* 5.0 5.8 - - - +
1240F PHE* 3.3 48.0 - - + +
1241F LEU* 3.7 24.5 - - + +
1244F ALA* 3.8 17.7 - - + -
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Residues in contact with GLN1190 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1186F SER* 2.9 34.8 + - - +
1187F ARG* 3.7 32.8 + - - +
1189F LEU* 1.3 77.9 - - - +
1191F GLN* 1.3 61.1 + - - +
1193F ASP* 3.2 9.2 + - - +
1194F ASP* 3.0 23.2 + - - +
1241F LEU* 3.7 22.5 - - + +
1303F ALA* 6.3 0.2 - - - +
1306F GLU* 5.4 4.0 + - - +
1307F ILE* 3.6 36.5 - - - +
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Residues in contact with GLN1191 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1187F ARG* 3.0 28.5 + - + +
1188F ASP* 3.7 8.3 - - - +
1190F GLN* 1.3 76.8 - - - +
1192F LEU* 1.3 57.3 + - - +
1194F ASP* 3.3 9.6 + - - +
1195F THR* 3.0 29.9 + - - -
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Residues in contact with LEU1192 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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245F ILE* 4.3 17.9 - - + +
246F ASP* 3.9 35.9 - - - +
247F LEU* 3.9 17.3 - - + +
250F ILE* 5.5 6.1 - - + -
1188F ASP* 2.9 18.5 + - - +
1189F LEU* 3.8 11.0 - - + +
1191F GLN* 1.3 73.8 - - - +
1193F ASP* 1.3 65.6 + - - +
1195F THR* 3.1 15.6 - - + +
1196F THR* 3.0 44.4 + - + +
1237F ALA* 3.7 20.0 - - + -
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Residues in contact with ASP1193 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388F ARG* 5.8 1.0 + - - -
1189F LEU 2.9 14.7 + - - +
1190F GLN* 3.2 13.5 + - - +
1192F LEU* 1.3 77.6 - - - +
1194F ASP* 1.3 59.1 + - - +
1196F THR* 3.1 7.1 + - - -
1197F GLN* 2.9 42.3 + - - +
1234F ASN* 4.1 13.7 - - - +
1237F ALA* 4.2 13.8 - - + +
1238F SER* 4.7 12.3 + - - -
1241F LEU* 4.4 18.5 - - + +
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Residues in contact with ASP1194 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1190F GLN 3.0 13.4 + - - +
1191F GLN* 3.7 11.4 - - - +
1193F ASP* 1.3 76.5 - - - +
1195F THR* 1.3 58.0 + - - +
1197F GLN* 3.1 11.6 + - - +
1198F LEU* 3.1 35.5 + - - +
1314F ARG* 4.3 21.6 + - - -
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Residues in contact with THR1195 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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247F LEU* 5.9 1.8 - - + -
1191F GLN* 3.0 12.9 + - - +
1192F LEU* 3.1 33.0 - - + +
1194F ASP* 1.3 76.0 - - - +
1196F THR* 1.3 63.3 + - + +
1198F LEU* 4.8 2.6 - - - +
1199F PRO* 3.2 21.6 - - - +
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Residues in contact with THR1196 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247F LEU* 3.8 26.9 - - + -
1192F LEU* 3.0 31.3 + - + +
1193F ASP 3.1 12.6 + - - -
1195F THR* 1.3 83.1 - - + +
1197F GLN* 1.3 61.3 + - - +
1198F LEU 3.3 0.9 - - - -
1199F PRO* 3.2 12.6 - - - +
1200F LEU* 3.9 10.9 + - - +
1230F TYR* 5.4 4.2 - - - +
1233F SER* 4.9 4.7 - - - +
1234F ASN* 4.1 24.1 + - - +
1237F ALA* 3.9 13.7 - - + +
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Residues in contact with GLN1197 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388F ARG* 5.6 6.4 + - - +
422F ALA* 6.1 3.0 - - - +
425F THR* 5.4 6.5 - - - +
426F ASN* 4.8 12.5 + - - +
1193F ASP* 2.9 37.5 + - - +
1194F ASP* 3.1 13.3 + - - +
1196F THR* 1.3 77.2 + - - +
1198F LEU* 1.3 65.6 + - - +
1200F LEU* 3.8 3.2 + - + +
1201F LEU* 3.6 36.2 + - + +
1234F ASN* 4.2 21.3 - - - +
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Residues in contact with LEU1198 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
825F GLU* 5.7 4.9 - - - +
1119F GLY 6.0 1.3 - - - -
1120F SER* 5.6 14.8 - - - +
1123F ASN* 4.9 15.9 - - + +
1194F ASP* 3.1 17.3 + - - +
1195F THR* 4.8 2.5 - - - +
1197F GLN* 1.3 77.5 - - - +
1199F PRO* 1.3 70.1 - - + +
1201F LEU* 3.2 10.6 + - + +
1202F SER* 3.1 30.3 + - - +
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Residues in contact with PRO1199 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
781F ASN* 5.0 7.4 - - - +
1195F THR 3.2 24.5 - - - +
1196F THR* 3.2 11.4 - - - +
1198F LEU* 1.3 93.2 - - + +
1200F LEU* 1.3 55.5 + - - +
1202F SER* 3.6 9.5 - - - +
1203F HIS* 2.9 30.7 + - - +
1230F TYR* 4.0 26.4 - - + -
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Residues in contact with LEU1200 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392F GLN* 4.2 25.1 - - + +
421F VAL* 5.8 0.4 - - + -
1196F THR 3.9 9.2 + - - +
1197F GLN* 3.8 8.0 + - + +
1198F LEU 3.2 0.8 + - - -
1199F PRO* 1.3 79.1 - - - +
1201F LEU* 1.3 65.9 + - + +
1203F HIS* 3.3 7.9 + - + +
1204F PHE* 2.9 36.5 + - + +
1227F LEU* 4.1 26.9 - - + -
1230F TYR* 4.4 26.1 - - + +
1231F THR* 4.7 9.4 - - - +
1234F ASN* 3.4 31.9 - - + +
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Residues in contact with LEU1201 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392F GLN* 6.3 0.2 - - - +
418F CYS* 4.2 10.4 - - + +
421F VAL* 4.0 28.9 - - + -
422F ALA* 4.5 24.2 - - + -
1123F ASN* 4.6 18.6 - - - +
1197F GLN* 3.6 33.0 - - + +
1198F LEU* 3.2 10.6 + - + +
1200F LEU* 1.3 83.0 - - + +
1202F SER* 1.3 65.4 + - - +
1204F PHE* 3.3 7.4 + - + +
1205F ALA* 3.0 24.9 + - - +
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Residues in contact with SER1202 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
781F ASN* 3.5 33.2 + - - -
825F GLU* 4.4 15.6 + - - +
1198F LEU* 3.1 21.8 + - - +
1199F PRO* 3.6 8.2 - - - +
1201F LEU* 1.3 76.6 - - - +
1203F HIS* 1.3 62.1 + - - +
1205F ALA* 3.4 4.4 + - - +
1206F GLU* 3.0 32.9 + - - +
----------------------------------------------------------
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Residues in contact with HIS1203 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396F TYR* 3.6 11.4 - + - -
781F ASN* 5.6 0.6 - - - +
1199F PRO 2.9 17.9 + - - +
1200F LEU* 3.4 9.9 - - + +
1202F SER* 1.3 76.5 - - - +
1204F PHE* 1.3 65.4 + - - +
1206F GLU* 3.4 9.3 + - - +
1207F THR* 2.9 45.6 + - - -
1223F PHE* 3.7 29.9 - + - -
1226F LYS* 4.1 20.3 + - + +
1227F LEU* 3.4 46.6 - - + +
1230F TYR* 5.3 11.7 - + + -
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Residues in contact with PHE1204 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392F GLN* 4.0 11.4 - - + -
395F ILE* 3.9 13.0 - - + -
396F TYR* 3.8 33.4 - + + -
399F ILE* 3.5 33.0 - - + -
417F ILE* 5.1 0.7 - - + -
418F CYS* 4.2 8.5 - - - -
421F VAL* 3.5 46.0 - - + -
1200F LEU* 2.9 31.2 + - + +
1201F LEU* 3.3 11.6 + - + +
1203F HIS* 1.3 79.1 - - - +
1205F ALA* 1.3 63.9 + - - +
1207F THR* 3.3 3.5 + - - -
1208F VAL* 2.9 31.3 + - + +
1227F LEU* 4.1 12.1 - - + -
----------------------------------------------------------
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Residues in contact with ALA1205 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414F ALA* 6.0 2.9 - - + -
418F CYS* 3.5 23.9 - - - -
504F ARG* 5.9 4.3 - - - +
1201F LEU 3.0 13.4 + - - +
1202F SER* 3.7 5.6 - - - +
1204F PHE* 1.3 76.6 - - - +
1206F GLU* 1.3 65.5 + - + +
1208F VAL* 3.1 6.3 + - - +
1209F GLU* 3.0 32.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU1206 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
778F TRP* 3.1 27.1 - - + -
779F LEU 3.7 7.6 - - - +
780F LEU* 3.4 13.8 - - + +
781F ASN* 2.7 52.2 + - - +
824F GLY 5.4 0.2 - - - +
825F GLU* 4.9 6.1 - - - +
826F ARG* 4.9 11.9 + - + +
1202F SER* 3.0 22.7 + - - +
1203F HIS* 4.0 6.0 - - - +
1205F ALA* 1.3 77.0 - - + +
1207F THR* 1.3 62.9 + - - +
1209F GLU* 4.6 3.8 - - - +
1210F GLY* 3.0 20.3 + - - -
----------------------------------------------------------
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Residues in contact with THR1207 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396F TYR* 3.6 30.9 + - + +
399F ILE* 4.6 10.1 - - + -
400F MET* 4.6 13.5 - - + -
778F TRP* 5.0 0.2 - - - -
1203F HIS* 2.9 39.6 + - - -
1204F PHE* 3.7 3.8 - - - -
1206F GLU* 1.3 77.5 - - - +
1208F VAL* 1.3 64.3 + - + +
1209F GLU 3.5 0.2 + - - -
1210F GLY 3.9 0.7 - - - -
1211F LEU* 3.7 24.1 + - + +
1214F ILE* 4.2 17.2 - - + +
1223F PHE* 4.1 8.7 - - - -
----------------------------------------------------------
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Residues in contact with VAL1208 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399F ILE* 3.8 19.5 - - + -
407F LEU* 3.9 17.2 - - + +
414F ALA* 3.6 35.0 - - + +
417F ILE* 3.7 40.4 - - + -
418F CYS* 5.3 0.9 - - - -
1204F PHE* 2.9 24.2 + - + +
1205F ALA* 3.1 7.6 + - - +
1207F THR* 1.3 79.1 - - - +
1209F GLU* 1.3 62.2 + - - +
1211F LEU* 3.3 23.0 - - + +
----------------------------------------------------------
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Residues in contact with GLU1209 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407F LEU* 4.7 9.7 - - - +
414F ALA* 3.8 25.0 - - + +
504F ARG* 2.9 37.4 + - - -
776F LYS* 6.1 2.9 - - - -
778F TRP* 5.5 6.9 - - + +
826F ARG* 3.8 21.4 - - - +
1205F ALA* 3.0 21.2 + - - +
1206F GLU* 4.4 3.4 - - - +
1208F VAL* 1.3 76.2 - - - +
1210F GLY* 1.3 58.2 + - - +
1211F LEU* 2.9 12.6 + - - +
1212F THR* 4.9 1.0 + - - -
----------------------------------------------------------
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Residues in contact with GLY1210 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
778F TRP* 3.6 37.2 - - - -
1206F GLU 3.0 12.5 + - - -
1207F THR 3.9 4.5 - - - -
1209F GLU* 1.3 74.5 - - - +
1211F LEU* 1.3 63.1 + - - +
1212F THR* 3.5 4.0 - - - -
1213F THR 3.6 3.9 + - - -
1214F ILE* 3.5 24.3 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il