Contacts of the helix formed by residues 1219 - 1274 (chain D) in PDB entry 5YWB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TYR1219 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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769D PRO* 6.0 2.7 - - + -
790D PHE* 3.3 46.5 + + + -
791D GLU* 3.4 19.8 - - + +
792D SER* 4.5 4.5 + - - -
846D GLN* 3.4 17.2 + - - -
1214D ILE* 3.5 7.8 + - + +
1217D PHE* 3.6 36.6 - + + -
1218D ARG* 1.3 76.6 - - - +
1220D GLU* 1.3 64.3 + - - +
1221D ALA 3.2 3.1 - - - -
1222D ARG* 2.9 38.3 + - + +
1223D PHE* 3.1 26.0 + + + -
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Residues in contact with GLU1220 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396D TYR* 5.6 0.2 - - - -
400D MET* 3.8 37.5 - - + +
401D HIS* 5.6 4.5 - - - -
1214D ILE* 4.4 8.5 - - - +
1215D ARG* 3.4 28.5 - - + +
1218D ARG* 3.3 14.7 + - - +
1219D TYR* 1.3 82.3 - - - +
1221D ALA* 1.3 57.3 + - - +
1223D PHE* 3.4 7.2 + - - +
1224D GLN* 2.9 32.1 + - - +
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Residues in contact with ALA1221 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1218D ARG 5.1 0.8 + - - +
1219D TYR 3.2 1.0 - - - -
1220D GLU* 1.3 79.7 - - - +
1222D ARG* 1.3 80.6 + - + +
1224D GLN* 3.4 4.9 + - - +
1225D GLN* 2.9 26.2 + - - +
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Residues in contact with ARG1222 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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791D GLU* 3.2 39.8 - - + +
1219D TYR* 2.9 37.4 + - + +
1221D ALA* 1.3 97.0 - - + +
1223D PHE* 1.3 58.6 + - + +
1225D GLN* 3.3 7.8 + - - +
1226D LYS* 2.9 29.6 + - - +
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Residues in contact with PHE1223 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396D TYR* 3.1 21.4 + - - +
400D MET* 5.8 1.6 - - + -
778D TRP* 4.5 2.9 - + - -
780D LEU* 4.1 19.3 - - + -
790D PHE* 3.9 21.5 - + - -
1203D HIS* 3.7 26.2 - + - -
1207D THR* 4.1 4.9 - - - -
1214D ILE* 3.5 52.3 - - + -
1219D TYR* 3.1 19.2 + + + +
1220D GLU* 4.0 7.9 - - - +
1222D ARG* 1.3 76.9 - - + +
1224D GLN* 1.3 60.5 + - - +
1226D LYS* 3.2 33.0 + - - +
1227D LEU* 2.9 24.9 + - - +
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Residues in contact with GLN1224 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263D TYR* 4.7 10.5 - - - -
393D THR* 4.0 16.4 + - - -
396D TYR* 3.6 28.0 + - + -
397D ASN* 3.8 38.4 + - - +
400D MET* 4.7 5.9 - - - +
1220D GLU 2.9 18.8 + - - +
1221D ALA* 3.8 5.2 - - - +
1223D PHE* 1.3 77.1 - - - +
1225D GLN* 1.3 57.9 + - - +
1227D LEU* 3.3 3.4 + - + +
1228D LEU* 2.9 45.9 + - + +
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Residues in contact with GLN1225 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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260D LEU* 5.5 4.9 - - - +
1221D ALA 2.9 18.3 + - - +
1222D ARG* 3.5 8.1 - - - +
1224D GLN* 1.3 77.6 - - - +
1226D LYS* 1.3 62.7 - - - +
1228D LEU* 3.2 25.2 + - - +
1229D GLU* 3.0 22.0 + - - +
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Residues in contact with LYS1226 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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780D LEU* 4.1 14.6 - - - +
786D GLU* 5.5 4.2 + - - -
791D GLU* 4.8 14.7 + - - -
1203D HIS* 4.1 17.1 + - + +
1222D ARG 2.9 13.8 + - - +
1223D PHE* 3.2 40.6 + - - +
1225D GLN* 1.3 77.4 - - - +
1227D LEU* 1.3 62.0 + - - +
1229D GLU* 3.1 8.2 + - + +
1230D TYR* 2.9 57.6 + - + +
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Residues in contact with LEU1227 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392D GLN* 4.8 2.2 - - + +
393D THR* 4.2 22.0 - - - +
396D TYR* 3.4 47.8 - - + -
1200D LEU* 4.1 10.5 - - + -
1203D HIS* 3.4 37.6 + - + +
1204D PHE* 4.1 17.5 - - + -
1223D PHE 2.9 13.5 + - - +
1224D GLN* 3.8 4.9 - - + +
1225D GLN 3.3 0.2 - - - -
1226D LYS* 1.3 77.1 - - - +
1228D LEU* 1.3 60.8 + - + +
1230D TYR* 3.3 4.0 + - - +
1231D THR* 2.9 38.1 + - + +
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Residues in contact with LEU1228 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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259D ALA* 4.7 9.9 - - + -
260D LEU* 3.8 40.8 - - + +
263D TYR* 6.2 0.7 - - + -
393D THR* 4.1 25.6 - - + +
1224D GLN* 2.9 32.7 + - + +
1225D GLN* 3.2 32.1 + - - +
1227D LEU* 1.3 78.8 - - + +
1229D GLU* 1.3 63.0 + - - +
1231D THR* 3.1 10.4 - - + +
1232D ASP* 3.0 35.6 + - - +
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Residues in contact with GLU1229 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1225D GLN 3.0 12.2 + - - +
1226D LYS* 3.1 12.5 + - - +
1228D LEU* 1.3 76.1 - - - +
1230D TYR* 1.3 75.8 + - + +
1232D ASP* 3.2 6.7 + - - +
1233D SER* 3.1 33.3 + - - +
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Residues in contact with TYR1230 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1196D THR* 5.4 4.6 - - - +
1199D PRO* 4.0 30.7 - - + -
1200D LEU* 4.4 26.8 - - + +
1203D HIS* 5.3 10.3 - + + -
1226D LYS* 2.9 61.3 + - + +
1227D LEU* 3.9 5.6 - - - +
1229D GLU* 1.3 85.0 - - + +
1231D THR* 1.3 58.4 + - - +
1233D SER* 3.3 6.6 + - - -
1234D ASN* 2.9 28.3 + - - +
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Residues in contact with THR1231 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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259D ALA* 4.1 18.4 - - + -
389D GLY* 4.3 7.2 + - - +
392D GLN* 3.3 25.1 + - - +
393D THR* 5.5 3.1 - - - -
1200D LEU* 4.7 9.6 - - - +
1227D LEU* 2.9 27.2 + - + +
1228D LEU* 3.1 25.4 - - + +
1230D TYR* 1.3 73.8 - - - +
1232D ASP* 1.3 59.8 + - - +
1234D ASN* 3.6 7.2 - - - +
1235D ASN* 2.9 39.1 + - - -
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Residues in contact with ASP1232 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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253D LEU* 4.0 14.0 - - + +
258D ARG* 4.3 19.6 + - - +
259D ALA* 3.2 36.3 + - - +
260D LEU 5.5 1.0 + - - -
1228D LEU* 3.0 28.0 + - - +
1229D GLU* 3.7 6.8 - - - +
1231D THR* 1.3 77.5 - - - +
1233D SER* 1.3 62.1 + - - +
1235D ASN* 3.3 7.6 + - - +
1236D ILE* 3.0 24.8 + - - +
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Residues in contact with SER1233 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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247D LEU* 4.6 26.1 - - - +
1196D THR* 4.6 7.1 + - - -
1229D GLU* 3.1 25.8 + - - -
1230D TYR* 3.7 9.4 - - - -
1232D ASP* 1.3 77.8 - - - +
1234D ASN* 1.3 62.1 + - - +
1236D ILE* 3.0 24.9 - - - +
1237D ALA* 3.0 11.3 + - - +
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Residues in contact with ASN1234 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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388D ARG* 2.9 28.2 + - - +
392D GLN* 4.9 3.7 - - - +
1193D ASP* 4.1 14.0 - - - +
1196D THR* 4.1 20.1 + - - +
1197D GLN* 4.2 24.5 - - - +
1200D LEU* 3.4 27.2 - - + +
1230D TYR 2.9 17.6 + - - +
1231D THR* 3.6 7.9 - - - +
1233D SER* 1.3 76.6 - - - +
1235D ASN* 1.3 62.6 + - - +
1237D ALA* 3.3 2.8 + - - +
1238D SER 3.0 18.4 + - - -
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Residues in contact with ASN1235 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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253D LEU* 4.0 15.2 - - + +
257D MET* 5.0 5.6 + - + +
259D ALA* 4.5 12.1 - - - +
262D ASN* 5.9 1.2 - - - +
385D ILE* 3.5 28.5 + - + +
386D ASN* 5.5 3.2 + - - +
388D ARG* 3.4 25.2 + - - +
389D GLY* 3.8 23.1 + - - -
392D GLN* 5.0 0.3 - - - +
1231D THR* 2.9 25.5 + - - +
1232D ASP* 3.7 6.7 + - - +
1233D SER 3.2 0.2 - - - -
1234D ASN* 1.3 78.4 - - - +
1236D ILE* 1.3 57.0 + - - +
1238D SER* 3.4 2.4 + - - -
1239D LEU* 2.9 29.9 + - - +
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Residues in contact with ILE1236 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217D PHE* 5.0 8.3 - - + -
247D LEU* 4.9 4.5 - - + -
250D ILE* 3.6 31.6 - - + -
251D GLY* 3.1 33.2 - - - +
252D LYS* 3.5 20.4 - - - +
253D LEU* 3.5 23.3 - - + +
1232D ASP 3.0 15.9 + - - +
1233D SER* 3.0 25.1 - - - +
1235D ASN* 1.3 76.3 - - - +
1237D ALA* 1.3 64.3 + - - +
1239D LEU* 3.2 4.2 + - + +
1240D PHE* 3.0 26.9 + - + +
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Residues in contact with ALA1237 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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250D ILE* 4.8 5.8 - - - -
1189D LEU* 5.0 6.9 - - - +
1192D LEU* 3.7 29.8 - - + -
1193D ASP* 4.2 14.1 - - - +
1196D THR* 3.9 13.7 - - - +
1233D SER 3.0 16.8 + - - +
1234D ASN 3.6 4.5 - - - +
1235D ASN 3.3 0.2 - - - -
1236D ILE* 1.3 79.9 - - + +
1238D SER* 1.3 62.6 + - - +
1240D PHE* 3.3 3.1 + - - +
1241D LEU* 3.0 22.2 + - - +
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Residues in contact with SER1238 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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385D ILE* 3.3 20.1 - - - +
388D ARG* 3.4 33.6 + - - -
429D MET* 5.1 4.9 - - - +
1193D ASP* 4.7 10.9 + - - -
1234D ASN* 3.0 8.6 + - - -
1235D ASN 3.8 2.0 - - - -
1237D ALA* 1.3 75.3 - - - +
1239D LEU* 1.3 63.7 + - - +
1241D LEU* 3.3 9.4 + - - +
1242D THR* 3.0 24.6 + - - +
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Residues in contact with LEU1239 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217D PHE* 3.6 42.0 - - + -
253D LEU* 4.6 9.0 - - + -
257D MET* 3.6 28.7 - - + -
378D TYR* 4.9 4.0 - - + -
381D ILE* 5.3 0.4 - - + -
382D GLU* 3.2 27.8 - - + +
385D ILE* 3.8 18.1 - - + +
1235D ASN 2.9 18.6 + - - +
1236D ILE* 3.6 6.1 - - + +
1237D ALA 3.2 0.2 - - - -
1238D SER* 1.3 76.2 - - - +
1240D PHE* 1.3 60.0 + - + +
1242D THR* 3.1 13.4 - - + +
1243D ALA* 2.9 28.9 + - - +
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Residues in contact with PHE1240 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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216D ARG* 4.5 7.2 - - + -
217D PHE* 3.3 49.6 - + + -
232D TRP* 4.0 18.8 - + - -
233D MET* 4.8 3.5 - - - +
236D PHE* 3.4 57.2 - + + -
250D ILE* 3.4 35.7 - - + -
1189D LEU* 3.3 18.1 - - + +
1236D ILE* 3.0 17.8 + - + +
1237D ALA 3.9 2.7 - - - +
1239D LEU* 1.3 75.9 - - + +
1241D LEU* 1.3 66.1 + - - +
1243D ALA* 3.7 3.6 - - + +
1244D ALA* 3.0 20.1 + - - +
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Residues in contact with LEU1241 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1186D SER* 4.1 10.8 - - - +
1189D LEU* 3.7 31.9 - - + +
1190D GLN* 3.7 33.9 - - + +
1193D ASP* 4.4 19.1 - - + +
1237D ALA 3.0 13.5 + - - +
1238D SER* 3.3 10.3 + - - +
1240D PHE* 1.3 78.2 - - - +
1242D THR* 1.3 63.3 + - - +
1244D ALA* 3.3 4.2 + - + +
1245D ASN* 3.0 27.9 + - - +
1307D ILE* 6.2 2.9 - - + -
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Residues in contact with THR1242 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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378D TYR* 5.6 5.1 - - + -
381D ILE* 3.3 46.4 - - + +
385D ILE* 4.3 1.3 - - + -
1238D SER* 3.0 17.1 + - - +
1239D LEU* 3.1 28.7 - - + +
1241D LEU* 1.3 78.4 - - - +
1243D ALA* 1.3 57.9 + - - +
1245D ASN* 3.3 9.0 + - - +
1246D ARG* 2.9 38.9 + - - +
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Residues in contact with ALA1243 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217D PHE* 4.6 8.5 - - + -
219D GLN* 5.7 0.2 - - - +
230D TYR* 5.0 5.6 - - + -
232D TRP* 4.5 22.9 - - + -
233D MET* 4.5 10.7 - - + +
378D TYR* 5.4 10.8 - - + -
1239D LEU 2.9 18.7 + - - +
1240D PHE* 3.7 7.6 - - - +
1241D LEU 3.2 0.2 - - - -
1242D THR* 1.3 76.1 - - + +
1244D ALA* 1.3 60.6 + - - +
1246D ARG* 3.2 7.4 + - - +
1247D TRP* 2.9 28.1 + - - +
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Residues in contact with ALA1244 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233D MET* 3.8 20.2 - - + +
236D PHE* 5.5 0.4 - - + -
1182D PHE* 3.7 22.4 - - + -
1185D ALA* 5.7 5.4 - - + -
1186D SER* 5.7 3.8 - - - -
1189D LEU* 3.8 17.3 - - + -
1240D PHE 3.0 17.1 + - - +
1241D LEU* 3.7 4.0 - - + +
1243D ALA* 1.3 72.3 - - - +
1245D ASN* 1.3 66.7 + - - +
1247D TRP* 3.2 7.2 + - + +
1248D LEU 3.0 19.2 + - - -
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Residues in contact with ASN1245 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1182D PHE* 3.6 23.6 - - - -
1186D SER* 5.3 0.7 + - - -
1241D LEU* 3.0 21.4 + - - +
1242D THR* 3.4 13.9 + - - +
1243D ALA 3.3 0.2 - - - -
1244D ALA* 1.3 77.7 - - - +
1246D ARG* 1.3 72.5 + - - +
1248D LEU* 3.3 2.9 + - - +
1249D GLU* 3.0 37.6 + - - +
1300D ARG* 5.1 7.5 - - - +
1303D ALA* 5.4 9.7 - - - +
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Residues in contact with ARG1246 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
230D TYR* 3.6 26.0 - - + +
374D GLN* 3.8 19.7 - - - -
377D TYR* 3.2 34.4 - - - +
378D TYR* 3.9 16.6 - - + +
381D ILE* 4.1 19.4 - - - +
1242D THR* 2.9 24.2 + - - +
1243D ALA* 3.2 9.6 + - - +
1245D ASN* 1.3 86.3 - - - +
1247D TRP* 1.3 59.2 + - - +
1249D GLU* 2.7 41.8 + - - +
1250D VAL* 2.9 33.4 + - - +
1300D ARG* 3.3 20.6 - - - +
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Residues in contact with TRP1247 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229D THR* 3.9 9.0 - - - -
230D TYR* 3.5 38.0 - - + -
231D TRP* 5.6 1.4 - + - -
233D MET* 4.3 13.7 - - + +
234D ASN* 3.7 15.6 + - - -
237D ILE* 3.4 41.5 - - + -
1178D ILE* 3.7 23.1 - - + -
1181D TYR* 5.6 0.9 - - + -
1182D PHE* 4.3 21.3 - + + -
1243D ALA 2.9 16.7 + - - +
1244D ALA* 3.2 13.4 + - + +
1246D ARG* 1.3 75.3 - - - +
1248D LEU* 1.3 88.3 + - + +
1250D VAL* 3.2 3.3 + - - +
1251D ARG* 3.1 60.4 + - + +
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Residues in contact with LEU1248 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1178D ILE* 4.5 23.6 - - + +
1179D GLN* 3.8 22.4 - - - +
1182D PHE* 3.4 61.7 - - + -
1244D ALA 3.0 6.6 + - - +
1245D ASN* 3.7 7.2 - - - +
1247D TRP* 1.3 83.8 - - + +
1249D GLU* 1.3 60.9 + - + +
1251D ARG* 3.4 1.8 + - - -
1252D MET* 2.9 39.9 + - + +
1299D VAL* 4.1 18.8 - - + -
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Residues in contact with GLU1249 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374D GLN* 3.5 12.7 - - + +
1245D ASN* 3.0 25.6 + - - +
1246D ARG* 2.7 47.7 + - - +
1248D LEU* 1.3 80.6 - - + +
1250D VAL* 1.3 56.6 + - - +
1252D MET* 3.3 4.8 + - - +
1253D GLU* 2.9 35.0 + - - +
1296D ASN* 3.4 23.7 - - - +
1299D VAL* 6.1 3.8 - - + -
1300D ARG* 3.0 40.7 + - + +
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Residues in contact with VAL1250 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228D GLY 3.9 6.1 - - - +
229D THR* 4.1 22.9 - - - +
230D TYR* 3.6 21.1 - - + -
370D ARG 5.6 0.4 - - - +
371D THR* 5.8 5.4 - - - +
374D GLN* 3.6 26.7 - - + -
1246D ARG 2.9 20.5 + - - +
1247D TRP* 3.2 4.9 + - + +
1249D GLU* 1.3 76.6 - - - +
1251D ARG* 1.3 65.4 + - + +
1253D GLU* 3.1 6.4 + - - +
1254D TYR* 3.0 48.5 + - + +
----------------------------------------------------------
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Residues in contact with ARG1251 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229D THR* 6.2 0.4 - - - +
231D TRP* 3.6 24.9 - - + -
234D ASN* 3.6 23.4 + - - -
1178D ILE* 3.4 31.7 - - + +
1247D TRP* 3.1 49.1 + - + +
1248D LEU 4.1 1.3 - - - +
1250D VAL* 1.3 77.9 - - + +
1252D MET* 1.3 57.7 + - - +
1254D TYR* 3.3 16.5 + - + +
1255D ILE* 3.0 31.0 + - - +
----------------------------------------------------------
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Residues in contact with MET1252 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1175D CYS* 3.5 34.8 - - - -
1178D ILE* 4.8 11.2 - - + -
1179D GLN* 5.1 4.0 - - - +
1248D LEU* 2.9 36.5 + - + +
1249D GLU* 3.6 7.4 - - - +
1251D ARG* 1.3 78.1 - - - +
1253D GLU* 1.3 56.4 + - - +
1255D ILE* 3.2 13.6 + - + +
1256D GLY* 2.9 23.7 + - - -
1295D LEU* 3.7 41.9 - - + +
1296D ASN* 5.1 9.9 - - - +
1299D VAL* 4.0 27.1 - - + -
----------------------------------------------------------
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Residues in contact with GLU1253 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370D ARG* 3.3 43.6 + - + +
373D LEU* 5.3 3.8 - - - +
374D GLN* 3.8 20.6 + - - +
1249D GLU 2.9 21.6 + - - +
1250D VAL* 3.1 7.6 + - - +
1252D MET* 1.3 73.0 - - - +
1254D TYR* 1.3 63.2 + - + +
1256D GLY* 3.3 1.7 + - - +
1257D ALA* 2.9 28.1 + - - +
1292D SER* 3.1 24.5 + - - +
1293D ASN* 4.2 6.1 - - - +
1295D LEU* 5.7 0.3 - - - +
1296D ASN* 3.2 35.9 + - + +
----------------------------------------------------------
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Residues in contact with TYR1254 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228D GLY 5.6 0.3 + - - -
229D THR* 4.5 18.3 + - - -
367D LEU* 3.6 43.1 - - + +
370D ARG* 5.7 2.7 - - + -
371D THR* 3.4 21.5 + - - +
1250D VAL* 3.0 38.9 + - + +
1251D ARG* 3.3 18.6 + - + +
1253D GLU* 1.3 77.6 - - + +
1255D ILE* 1.3 65.4 + - + +
1257D ALA* 3.2 6.4 + - + +
1258D CYS* 2.9 24.8 + - - +
----------------------------------------------------------
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Residues in contact with ILE1255 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1171D LEU* 3.6 41.4 - - + +
1174D VAL* 4.6 21.8 - - + -
1175D CYS* 4.9 15.7 - - + -
1178D ILE* 5.9 4.0 - - + -
1251D ARG 3.0 16.0 + - - +
1252D MET* 3.4 21.8 - - + +
1254D TYR* 1.3 76.6 - - - +
1256D GLY* 1.3 63.5 + - - +
1258D CYS* 3.2 11.9 + - + +
1259D VAL* 3.0 20.4 + - - +
1295D LEU* 4.2 15.3 - - + -
----------------------------------------------------------
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Residues in contact with GLY1256 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1252D MET 2.9 14.2 + - - -
1253D GLU 3.3 4.0 + - - -
1255D ILE* 1.3 76.6 - - - +
1257D ALA* 1.3 62.1 + - - +
1259D VAL* 3.0 26.8 - - - +
1260D VAL* 3.0 12.6 + - - +
1292D SER* 3.1 21.4 + - - -
1295D LEU* 4.2 12.3 - - - -
----------------------------------------------------------
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Residues in contact with ALA1257 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363D PHE* 3.5 22.9 - - + +
366D LEU* 5.2 4.5 - - + -
367D LEU* 4.7 23.3 - - + +
370D ARG* 5.7 1.1 - - + -
1253D GLU 2.9 14.4 + - - +
1254D TYR* 3.2 13.9 + - + +
1256D GLY* 1.3 76.2 - - - +
1258D CYS* 1.3 62.1 + - - +
1260D VAL* 3.1 10.6 - - - +
1261D LEU* 2.9 26.5 + - - +
1292D SER* 3.8 2.8 + - - -
----------------------------------------------------------
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Residues in contact with CYS1258 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363D PHE* 4.2 9.1 - - - -
1171D LEU* 4.7 7.9 - - + -
1254D TYR 2.9 14.8 + - - +
1255D ILE* 3.4 15.5 - - + +
1257D ALA* 1.3 76.4 - - - +
1259D VAL* 1.3 63.2 + - - +
1261D LEU* 3.6 7.7 - - - +
1262D ILE* 3.0 32.0 + - + +
----------------------------------------------------------
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Residues in contact with VAL1259 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157D ILE* 5.7 5.2 - - + -
1164D PHE* 3.4 29.8 - - + -
1168D LEU* 5.4 0.7 - - + -
1171D LEU* 3.9 29.1 - - + +
1255D ILE 3.0 10.6 + - - +
1256D GLY* 3.0 35.0 - - - +
1258D CYS* 1.3 75.7 - - - +
1260D VAL* 1.3 58.0 + - + +
1262D ILE* 3.8 6.5 - - - +
1263D ALA* 2.9 33.4 + - + +
1291D VAL* 5.4 12.6 - - + -
1292D SER* 5.3 1.6 - - - +
1295D LEU* 5.3 5.2 - - + -
----------------------------------------------------------
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Residues in contact with VAL1260 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362D LEU* 4.4 9.6 - - + -
363D PHE* 5.4 1.6 - - + -
366D LEU* 3.5 35.2 - - + -
1256D GLY 3.0 20.8 + - - +
1257D ALA* 3.1 14.6 - - - +
1259D VAL* 1.3 78.0 - - + +
1261D LEU* 1.3 63.2 + - - +
1263D ALA* 3.7 5.0 - - - +
1264D ALA* 2.9 25.4 + - + +
1285D LEU* 5.5 0.9 - - + +
1288D ALA* 3.6 36.8 - - + +
1289D LEU* 4.1 3.1 - - + +
1292D SER* 3.5 9.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU1261 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359D ALA* 4.1 19.1 - - + +
360D VAL* 5.1 4.7 - - + -
362D LEU* 5.6 3.1 - - + -
363D PHE* 3.4 53.2 - - + +
1257D ALA 2.9 18.8 + - - +
1258D CYS* 3.6 6.7 - - - +
1260D VAL* 1.3 79.6 - - - +
1262D ILE* 1.3 70.8 + - + +
1264D ALA* 3.3 4.9 + - + +
1265D ALA* 2.9 28.5 + - + +
----------------------------------------------------------
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Residues in contact with ILE1262 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1164D PHE* 3.4 29.8 - - + -
1167D ALA* 3.6 25.4 - - + +
1258D CYS* 3.0 23.0 + - + +
1259D VAL* 3.8 5.2 - - - +
1261D LEU* 1.3 86.7 - - + +
1263D ALA* 1.3 61.4 + - - +
1265D ALA* 4.0 9.2 - - + -
1266D THR* 2.8 41.9 + - + +
----------------------------------------------------------
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Residues in contact with ALA1263 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157D ILE* 4.2 26.7 - - + -
1161D THR* 5.5 0.6 + - - +
1164D PHE* 4.0 18.2 - - + -
1259D VAL 2.9 21.6 + - - +
1260D VAL* 3.7 5.8 - - - +
1262D ILE* 1.3 77.1 - - - +
1264D ALA* 1.3 57.6 + - - +
1266D THR* 2.9 18.4 + - - -
1267D SER* 2.8 24.2 + - - +
1284D GLY 5.9 0.7 - - - +
1288D ALA* 4.6 4.5 - - + -
----------------------------------------------------------
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Residues in contact with ALA1264 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323D ILE* 5.1 10.0 - - + +
359D ALA* 5.1 8.3 - - + -
362D LEU* 5.2 10.3 - - + -
1260D VAL* 2.9 20.0 + - + +
1261D LEU* 3.7 4.7 - - + +
1263D ALA* 1.3 75.7 - - - +
1265D ALA* 1.3 58.4 + - - +
1267D SER* 3.4 7.8 - - - -
1268D ILE* 2.9 31.7 + - - +
1285D LEU* 4.2 27.4 - - + +
1288D ALA* 5.7 0.8 - - - +
----------------------------------------------------------
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Residues in contact with ALA1265 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359D ALA* 5.4 6.0 - - + +
1261D LEU* 2.9 24.8 + - + +
1262D ILE* 3.7 10.8 - - + +
1263D ALA 3.2 0.4 - - - -
1264D ALA* 1.3 73.5 - - - +
1266D THR* 1.3 67.3 + - + +
1268D ILE* 3.0 13.1 - - + +
1269D SER* 2.9 25.5 + - - -
----------------------------------------------------------
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Residues in contact with THR1266 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1161D THR* 4.6 11.5 + - - +
1163D VAL* 4.7 20.1 - - + +
1164D PHE* 4.7 8.1 - - + -
1262D ILE* 2.8 31.3 + - + +
1263D ALA* 2.9 15.6 + - - -
1265D ALA* 1.3 74.5 - - + +
1267D SER* 1.3 56.7 + - - +
1269D SER* 4.5 4.9 - - - -
1270D ASN* 2.8 35.4 + - - +
----------------------------------------------------------
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Residues in contact with SER1267 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160D VAL* 5.0 6.8 - - - +
1161D THR* 4.2 19.2 + - - +
1263D ALA* 2.8 20.2 + - - +
1264D ALA* 3.4 13.6 - - - -
1266D THR* 1.3 75.0 + - - +
1268D ILE* 1.3 63.7 + - - +
1269D SER 3.0 0.5 + - - -
1271D SER* 2.9 34.1 + - - -
1272D LEU* 3.9 0.7 + - - +
1281D VAL* 4.9 12.5 - - - -
1284D GLY* 5.3 3.5 - - - -
1285D LEU* 4.2 17.8 - - - +
----------------------------------------------------------
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Residues in contact with ILE1268 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323D ILE* 5.1 17.5 - - + -
326D HIS* 6.0 0.4 - - - +
327D LEU* 6.6 0.2 - - + -
355D ALA* 3.6 43.7 - - + +
356D TYR* 3.8 30.6 - - + +
359D ALA* 5.2 9.0 - - + -
1264D ALA 2.9 19.9 + - - +
1265D ALA* 3.0 24.7 - - - +
1267D SER* 1.3 72.9 - - - +
1269D SER* 1.3 60.1 + - - +
1272D LEU* 3.3 31.5 - - + +
1281D VAL* 5.7 3.1 - - - +
----------------------------------------------------------
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Residues in contact with SER1269 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356D TYR* 6.0 5.4 - - - -
1265D ALA 2.9 18.4 + - - -
1266D THR* 4.0 4.5 - - - -
1267D SER 3.0 0.8 + - - -
1268D ILE* 1.3 79.8 - - - +
1270D ASN* 1.3 60.4 + - - +
1273D HIS* 2.9 38.1 + - - +
----------------------------------------------------------
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Residues in contact with ASN1270 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1161D THR* 5.3 5.4 - - + -
1163D VAL* 4.6 28.0 - - + +
1266D THR* 2.8 21.4 + - - +
1269D SER* 1.3 71.9 + - - +
1271D SER* 1.3 57.7 + - - +
1272D LEU 2.9 9.3 + - - -
1273D HIS* 5.1 0.2 - - - -
1274D ARG* 3.2 30.8 + - - +
1275D GLU* 2.7 43.4 + - - +
----------------------------------------------------------
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Residues in contact with SER1271 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160D VAL 5.5 2.9 - - - -
1161D THR* 5.2 8.7 - - - +
1266D THR 4.0 0.4 + - - -
1267D SER* 2.9 27.2 + - - -
1270D ASN* 1.3 73.5 - - - +
1272D LEU* 1.3 56.2 + - - +
1275D GLU* 3.5 13.9 - - - +
1276D LEU* 3.2 3.7 + - - -
1277D SER* 2.9 51.3 + - - +
1280D LEU* 4.9 5.8 - - - +
1281D VAL* 3.8 16.0 - - - +
----------------------------------------------------------
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Residues in contact with LEU1272 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326D HIS* 5.1 18.4 - - + +
327D LEU* 4.3 29.6 - - + +
329D LYS 5.9 2.5 - - - +
356D TYR* 6.1 0.7 - - - +
1267D SER 3.9 1.2 + - - +
1268D ILE* 3.3 31.4 - - + +
1269D SER 3.6 0.2 + - - -
1270D ASN 2.9 1.6 + - - -
1271D SER* 1.3 80.9 - - - +
1273D HIS* 1.3 67.0 + - + +
1274D ARG 3.7 0.4 - - - -
1276D LEU* 4.1 14.0 - - - +
----------------------------------------------------------
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Residues in contact with HIS1273 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1269D SER* 2.9 20.5 + - - +
1270D ASN* 5.1 0.2 - - - -
1272D LEU* 1.3 83.0 - - + +
1274D ARG* 1.3 69.6 + - + +
1276D LEU* 4.7 5.2 - - - +
----------------------------------------------------------
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Residues in contact with ARG1274 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1163D VAL* 6.2 1.8 - - - +
1270D ASN* 3.2 27.3 + - - +
1273D HIS* 1.3 90.8 - - + +
1275D GLU* 1.3 61.0 + - - +
1276D LEU* 3.2 16.7 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il