Contacts of the helix formed by residues 1278 - 1320 (chain F) in PDB entry 5YWB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA1278 (chain F).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324F VAL* 5.4 5.5 - - - +
327F LEU* 6.0 4.9 - - - +
328F GLY* 6.1 4.5 - - - -
573F PRO* 5.7 4.1 - - + +
1039F ASP* 4.1 20.5 + - + +
1277F SER* 1.3 74.3 + - - +
1279F GLY* 1.3 66.8 + - - +
1280F LEU 3.3 2.5 + - - -
1281F VAL* 3.5 18.0 + - - +
1282F GLY 4.4 1.6 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1279 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
573F PRO* 5.9 2.5 - - - -
577F PHE* 4.0 5.9 - - - -
1035F ALA* 3.7 34.3 - - - +
1036F LYS* 5.2 1.1 - - - -
1039F ASP* 3.0 27.3 + - - -
1277F SER* 4.3 1.8 + - - -
1278F ALA* 1.3 76.5 - - - +
1280F LEU* 1.3 65.5 + - - +
1281F VAL 3.3 0.9 + - - -
1282F GLY 3.5 8.3 + - - -
1283F LEU 3.8 2.9 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1280 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1035F ALA* 6.2 0.2 - - + -
1159F TYR* 4.4 24.9 - - + +
1160F VAL* 3.5 48.6 - - + +
1271F SER* 4.9 5.6 - - - +
1275F GLU* 4.2 11.2 - - + +
1277F SER* 3.3 31.4 - - - +
1278F ALA 3.3 1.4 - - - -
1279F GLY* 1.3 75.6 - - - +
1281F VAL* 1.3 58.8 + - - +
1282F GLY 3.3 0.2 - - - -
1283F LEU* 3.4 13.0 + - + -
1284F GLY* 2.9 25.8 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1281 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323F ILE* 4.7 9.9 - - + -
324F VAL* 4.6 14.6 - - + -
327F LEU* 4.6 25.1 - - + -
1267F SER* 4.9 13.5 - - - -
1268F ILE* 5.7 2.5 - - - +
1271F SER* 3.8 16.6 - - - +
1277F SER 3.5 23.3 - - - +
1278F ALA* 3.5 11.2 - - - +
1279F GLY 3.2 0.8 - - - -
1280F LEU* 1.3 77.8 - - - +
1282F GLY* 1.3 61.9 + - - +
1284F GLY* 3.3 1.4 + - - -
1285F LEU* 2.9 42.1 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1282 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320F ILE* 5.7 0.2 - - - -
324F VAL* 4.3 16.1 - - - +
577F PHE* 3.4 33.6 - - - -
1278F ALA 4.4 1.6 + - - -
1279F GLY 3.5 4.4 + - - -
1280F LEU 3.3 0.6 - - - -
1281F VAL* 1.3 79.1 - - - +
1283F LEU* 1.3 60.0 + - - +
1285F LEU* 4.0 1.4 - - - +
1286F THR* 2.7 32.7 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1283 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
577F PHE* 3.3 15.8 - - + -
1031F ASP* 3.5 30.1 - - + +
1032F TYR* 3.6 27.8 - - + +
1035F ALA* 3.5 18.2 - - + -
1156F VAL* 3.9 16.8 - - + -
1159F TYR* 6.2 2.2 - - + -
1160F VAL* 4.3 8.1 - - + -
1279F GLY 3.8 3.9 + - - +
1280F LEU* 3.4 15.7 + - + +
1281F VAL 3.4 0.2 - - - -
1282F GLY* 1.3 75.7 - - - +
1284F GLY* 1.3 63.8 + - - +
1286F THR* 4.6 0.7 - - - -
1287F TYR* 2.9 51.9 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1284 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156F VAL* 4.6 4.0 - - - -
1157F ILE* 4.1 9.7 - - - +
1160F VAL* 4.1 21.6 - - - +
1263F ALA* 6.4 0.4 - - - -
1267F SER* 5.3 3.6 - - - -
1280F LEU 2.9 16.4 + - - -
1281F VAL* 3.8 1.3 - - - -
1282F GLY 3.3 0.2 - - - -
1283F LEU* 1.3 76.8 - - - +
1285F LEU* 1.3 60.3 + - - +
1287F TYR* 3.9 0.3 - - - -
1288F ALA* 2.9 31.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1285 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320F ILE* 3.3 38.4 - - + +
323F ILE* 3.6 46.4 - - + -
324F VAL* 5.2 1.3 - - + -
362F LEU* 4.9 2.2 - - + -
1260F VAL* 5.5 0.7 - - + +
1264F ALA* 4.2 21.5 - - + +
1267F SER* 4.2 21.8 - - - +
1281F VAL* 2.9 33.1 + - + +
1282F GLY* 4.2 2.2 - - - +
1284F GLY* 1.3 75.6 - - - +
1286F THR* 1.3 60.3 + - - +
1288F ALA* 3.7 5.4 - - + +
1289F LEU* 2.9 25.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR1286 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320F ILE* 3.9 10.4 - - - +
577F PHE* 3.3 24.2 - - - +
580F LEU* 4.1 26.2 - - + -
581F SER* 3.7 19.1 + - - +
1282F GLY 2.7 23.1 + - - -
1283F LEU* 3.8 3.1 - - - -
1285F LEU* 1.3 77.6 - - - +
1287F TYR* 1.3 63.7 + - + +
1289F LEU* 3.4 1.7 + - - +
1290F MET* 2.9 45.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR1287 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
580F LEU* 5.9 1.3 - - + -
1027F LEU* 4.1 3.4 + - + +
1028F VAL* 3.4 23.8 + - - +
1031F ASP* 3.4 25.0 + - + +
1149F LEU 5.3 0.4 - - - -
1152F SER* 3.1 23.3 + - - -
1153F ALA* 3.5 35.7 - - + +
1156F VAL* 3.5 30.3 - - + -
1157F ILE* 4.7 1.8 - - + -
1283F LEU* 2.9 48.6 + - + +
1284F GLY 4.1 1.8 - - - +
1286F THR* 1.3 85.8 - - + +
1288F ALA* 1.3 56.7 + - - +
1290F MET* 3.4 19.7 + - + +
1291F VAL* 2.9 32.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1288 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157F ILE* 3.8 17.0 - - + +
1260F VAL* 3.6 30.1 - - + +
1263F ALA* 4.6 6.1 - - + -
1264F ALA* 5.7 1.1 - - + +
1284F GLY 2.9 19.7 + - - +
1285F LEU* 3.7 7.0 - - + +
1287F TYR* 1.3 76.7 - - - +
1289F LEU* 1.3 57.7 + - - +
1291F VAL* 3.3 10.1 - - - +
1292F SER* 2.9 31.7 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1289 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313F GLY 5.5 0.4 - - - +
316F GLY* 3.9 4.0 - - - -
317F PRO* 3.6 38.1 - - + -
320F ILE* 3.6 23.6 - - + -
362F LEU* 5.1 4.9 - - + -
366F LEU* 3.6 42.8 - - + -
370F ARG* 4.9 4.0 + - - +
581F SER* 4.9 5.6 - - - +
585F ILE* 6.1 5.6 - - + +
1260F VAL* 4.1 4.2 - - + +
1285F LEU 2.9 17.0 + - - +
1286F THR 3.9 2.7 - - - +
1288F ALA* 1.3 77.4 - - - +
1290F MET* 1.3 62.5 + - - +
1292F SER* 3.7 10.8 + - - -
1293F ASN* 4.0 13.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET1290 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
580F LEU* 5.2 9.9 - - + +
581F SER* 5.6 1.6 - - - -
584F HIS* 3.5 55.9 - - + +
585F ILE* 6.5 0.9 - - - -
1027F LEU* 6.5 1.1 - - - -
1031F ASP* 6.1 0.7 - - - +
1149F LEU* 4.8 12.8 - - + -
1286F THR* 2.9 40.1 + - + +
1287F TYR* 3.6 22.2 - - + +
1288F ALA 3.2 0.2 - - - -
1289F LEU* 1.3 75.9 - - - +
1291F VAL* 1.3 62.0 + - - +
1293F ASN* 3.3 6.1 + - - +
1294F TYR* 3.0 39.8 + - + -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1291 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1149F LEU 5.0 0.9 - - - +
1150F CYS* 4.1 33.0 - - + +
1153F ALA* 3.5 24.9 - - + -
1154F LEU 5.6 0.4 - - - +
1157F ILE* 5.1 6.1 - - + -
1259F VAL* 5.4 12.1 - - + -
1287F TYR 2.9 16.5 + - - +
1288F ALA* 3.3 15.7 - - - +
1290F MET* 1.3 74.9 - - - +
1292F SER* 1.3 62.6 + - - +
1293F ASN 3.1 0.2 - - - -
1294F TYR* 4.1 6.1 - - + +
1295F LEU* 2.9 37.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER1292 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366F LEU* 4.4 4.7 - - - +
370F ARG* 4.1 14.0 + - - -
1253F GLU* 3.1 21.3 + - - +
1256F GLY* 3.1 38.4 + - - -
1257F ALA* 3.8 2.1 + - - -
1259F VAL* 5.7 0.9 - - - -
1260F VAL* 3.5 14.3 - - - +
1288F ALA 2.9 18.1 + - - -
1289F LEU* 3.9 9.0 - - - -
1290F MET 3.2 1.0 - - - -
1291F VAL* 1.3 79.2 - - - +
1293F ASN* 1.3 59.0 + - - +
1295F LEU* 4.4 6.0 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN1293 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313F GLY* 6.2 0.6 - - - -
369F GLN* 4.9 1.4 + - - -
370F ARG* 2.9 47.7 + - - +
373F LEU* 5.2 6.0 - - - +
585F ILE* 5.1 13.7 - - - +
1253F GLU* 4.2 4.7 - - - +
1289F LEU* 4.0 10.7 + - - +
1290F MET 3.3 7.4 + - - +
1291F VAL 3.1 0.2 - - - -
1292F SER* 1.3 75.9 - - - +
1294F TYR* 1.3 70.8 + - + +
1295F LEU 3.0 3.2 + - - -
1296F ASN* 3.3 6.4 + - - +
1297F TRP* 3.1 21.6 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR1294 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584F HIS* 2.8 40.2 + + - -
588F THR* 2.9 24.7 + - + +
1145F ARG* 4.1 23.6 + - - -
1146F SER* 4.2 15.5 - - - +
1149F LEU* 3.5 34.8 - - + +
1150F CYS* 4.1 11.2 - - - -
1290F MET* 3.0 37.8 + - + +
1291F VAL* 3.3 8.0 + - + -
1293F ASN* 1.3 82.2 - - + +
1295F LEU* 1.3 56.3 + - - +
1297F TRP* 3.7 18.1 - + + +
1298F MET* 2.8 32.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1295 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1150F CYS* 4.5 14.8 - - - -
1171F LEU* 5.9 3.4 - - + -
1175F CYS* 6.1 0.7 - - - -
1252F MET* 3.7 34.5 - - + +
1253F GLU* 5.7 0.2 - - - +
1255F ILE* 4.2 16.8 - - + -
1256F GLY* 4.2 15.0 - - - -
1259F VAL* 5.3 5.2 - - + -
1291F VAL* 2.9 22.8 + - + +
1292F SER 4.5 5.6 - - - +
1293F ASN 3.0 0.4 - - - -
1294F TYR* 1.3 77.0 - - - +
1296F ASN* 1.3 59.2 + - - +
1298F MET* 3.2 6.6 + - + +
1299F VAL* 2.9 36.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN1296 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373F LEU* 6.3 0.4 - - - +
374F GLN* 3.4 21.4 + - - +
377F TYR* 6.0 1.0 - - - -
1249F GLU* 3.4 32.2 - - - +
1252F MET* 5.1 8.0 + - + +
1253F GLU* 3.2 43.9 + - + +
1293F ASN 3.3 4.2 + - - +
1295F LEU* 1.3 75.8 - - - +
1297F TRP* 1.3 68.4 + - - +
1299F VAL* 3.3 8.7 + - - +
1300F ARG* 3.0 31.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TRP1297 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377F TYR* 5.6 5.6 - - - -
588F THR* 3.9 23.1 - - + -
592F LEU* 3.3 48.2 - - + -
1142F CYS* 4.5 8.4 - - - +
1145F ARG* 4.1 18.7 - - - +
1146F SER* 3.3 15.0 + - - -
1293F ASN* 3.1 17.6 + - + +
1294F TYR* 3.7 20.4 - + + +
1296F ASN* 1.3 80.6 - - - +
1298F MET* 1.3 55.8 + - - +
1300F ARG* 3.3 9.4 + - - +
1301F ASN* 2.9 59.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET1298 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1143F LEU* 3.5 32.8 - - + +
1146F SER* 3.6 13.7 - - - -
1147F THR* 3.3 45.1 - - - +
1150F CYS* 4.1 15.3 - - - -
1294F TYR 2.8 22.7 + - - +
1295F LEU* 3.5 6.5 - - + +
1297F TRP* 1.3 71.8 - - - +
1299F VAL* 1.3 64.9 + - + +
1301F ASN* 3.3 2.6 + - - +
1302F LEU* 2.9 43.7 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1299 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1179F GLN* 4.4 14.1 - - - +
1248F LEU* 4.1 26.7 - - + -
1249F GLU* 6.1 3.8 - - + -
1252F MET* 4.0 31.0 - - + -
1295F LEU* 2.9 25.5 + - + +
1296F ASN* 3.3 8.7 + - - +
1298F MET* 1.3 77.7 - - + +
1300F ARG* 1.3 64.8 + - - +
1302F LEU* 3.3 10.2 + - + +
1303F ALA* 3.0 24.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1300 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374F GLN* 4.2 9.1 + - - -
377F TYR* 4.2 24.1 + - - -
1245F ASN* 5.1 7.5 - - - +
1246F ARG* 3.3 25.5 - - - +
1249F GLU* 3.0 41.2 + - + +
1296F ASN* 3.0 22.6 + - - +
1297F TRP* 3.6 11.7 - - - +
1299F VAL* 1.3 78.4 - - - +
1301F ASN* 1.3 70.2 + - - +
1303F ALA* 3.3 7.3 + - + +
1304F ASP* 3.0 23.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN1301 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1139F THR* 3.9 9.7 + - - +
1142F CYS* 3.2 28.9 - - - +
1143F LEU* 3.7 24.0 - - + +
1146F SER* 3.6 0.5 + - - -
1297F TRP* 2.9 50.0 + - - +
1298F MET* 3.8 2.9 - - - +
1299F VAL 3.3 0.2 - - - -
1300F ARG* 1.3 86.2 - - - +
1302F LEU* 1.3 57.0 + - - +
1304F ASP* 3.3 9.7 + - - +
1305F MET* 2.9 28.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1302 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1143F LEU* 3.4 25.9 - - + +
1179F GLN* 5.7 6.7 - - - +
1298F MET* 2.9 30.2 + - + +
1299F VAL* 3.6 9.6 - - + +
1300F ARG 3.2 0.2 - - - -
1301F ASN* 1.3 75.1 - - - +
1303F ALA* 1.3 60.3 + - - +
1305F MET* 3.3 8.8 + - - +
1306F GLU* 2.9 31.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1303 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1182F PHE* 5.7 9.0 - - + -
1190F GLN* 6.3 0.4 - - - +
1245F ASN* 5.4 11.2 - - - +
1299F VAL* 3.0 15.5 + - + +
1300F ARG* 3.6 9.6 - - - +
1302F LEU* 1.3 78.1 - - - +
1304F ASP* 1.3 62.1 + - - +
1306F GLU* 3.2 14.0 + - - +
1307F ILE* 3.0 33.6 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP1304 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1135F HIS* 5.8 1.4 - - - -
1139F THR* 2.7 25.6 + - + -
1300F ARG* 3.0 15.2 + - + +
1301F ASN* 3.6 12.1 + - - +
1303F ALA* 1.3 77.0 - - - +
1305F MET* 1.3 61.9 + - - +
1307F ILE* 3.3 12.3 + - - +
1308F GLN* 2.7 49.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET1305 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1004F TYR* 6.2 4.0 - - + -
1136F ILE* 6.2 3.4 - - + -
1139F THR* 3.9 12.7 - - + +
1140F LEU* 4.2 25.6 - - + -
1143F LEU* 3.5 27.4 - - + -
1301F ASN 2.9 17.1 + - - +
1302F LEU* 3.7 12.6 - - - +
1304F ASP* 1.3 75.7 - - - +
1306F GLU* 1.3 58.4 + - - +
1308F GLN* 3.4 6.6 + - + +
1309F LEU* 2.8 49.1 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU1306 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1183F ARG* 5.2 13.1 + - - +
1187F ARG* 2.8 33.5 + - - +
1190F GLN* 5.4 3.6 - - - +
1302F LEU* 2.9 17.5 + - + +
1303F ALA* 3.2 15.2 + - - +
1305F MET* 1.3 77.6 - - - +
1307F ILE* 1.3 64.5 + - + +
1309F LEU* 3.3 8.2 + - + +
1310F GLY* 2.9 20.1 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1307 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1187F ARG* 6.4 0.4 - - - +
1190F GLN* 3.6 33.0 - - + +
1241F LEU* 6.2 3.4 - - + -
1303F ALA* 3.0 20.7 + - + +
1304F ASP* 3.3 11.9 + - - +
1306F GLU* 1.3 77.6 - - + +
1308F GLN* 1.3 64.8 + - + +
1310F GLY* 3.2 3.9 + - - -
1311F ALA* 3.0 19.6 + - + +
1314F ARG* 5.5 1.2 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN1308 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1131F THR* 3.8 16.5 - - + +
1135F HIS* 3.4 26.3 + - - +
1136F ILE* 3.2 41.6 - - + +
1139F THR* 3.2 26.2 + - - +
1140F LEU 5.2 0.2 + - - -
1304F ASP* 2.7 37.0 + - - +
1305F MET* 3.9 5.0 - - - +
1307F ILE* 1.3 78.4 - - + +
1309F LEU* 1.3 57.3 + - - +
1311F ALA* 3.1 11.5 - - - +
1312F VAL* 2.9 31.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1309 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1000F ALA* 5.8 1.3 - - + -
1001F CYS* 3.6 38.6 - - + -
1004F TYR* 5.1 13.0 - - + -
1136F ILE* 5.0 1.3 - - - +
1305F MET* 2.8 38.7 + - + +
1306F GLU* 3.7 7.6 - - - +
1308F GLN* 1.3 74.5 - - - +
1310F GLY* 1.3 59.9 + - - +
1312F VAL* 3.2 19.1 + - + +
1313F LYS* 2.8 28.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1310 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1187F ARG* 6.0 3.8 - - - -
1306F GLU 2.9 14.8 + - - -
1307F ILE* 3.2 4.2 + - - -
1309F LEU* 1.3 75.1 - - - +
1311F ALA* 1.3 61.4 + - - +
1313F LYS* 3.2 11.7 + - - +
1314F ARG* 3.0 31.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1311 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1128F ASP* 3.0 27.7 - - + +
1131F THR* 5.1 11.4 - - + -
1132F ILE* 5.9 1.8 - - + -
1307F ILE* 3.0 12.4 + - + +
1308F GLN* 3.1 15.2 + - - +
1310F GLY* 1.3 75.5 - - - +
1312F VAL* 1.3 63.3 + - + +
1314F ARG* 3.0 36.2 - - - +
1315F ILE* 3.1 4.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1312 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1000F ALA 4.9 2.2 - - - +
1004F TYR* 4.2 29.2 - - + -
1097F LEU* 4.5 10.5 - - + -
1132F ILE* 4.1 26.2 - - + -
1136F ILE* 4.3 11.2 - - + -
1308F GLN 2.9 17.3 + - - +
1309F LEU* 3.2 18.4 + - + +
1311F ALA* 1.3 75.5 - - + +
1313F LYS* 1.3 56.5 + - - +
1315F ILE* 3.2 7.9 + - + +
1316F HIS* 2.9 47.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS1313 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1000F ALA* 3.6 30.0 - - + +
1309F LEU* 2.8 14.4 + - + +
1310F GLY* 3.4 13.7 - - - +
1311F ALA 3.1 0.2 - - - -
1312F VAL* 1.3 78.5 - - - +
1314F ARG* 1.3 57.6 + - - +
1316F HIS* 3.2 2.6 + - - +
1317F ALA* 2.9 30.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1314 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1124F ARG* 3.2 42.2 - - - +
1127F SER* 5.8 2.2 + - - -
1128F ASP* 3.2 23.5 + - - +
1194F ASP* 4.3 19.2 + - - -
1307F ILE 5.5 1.2 + - - -
1310F GLY 3.0 13.0 + - - +
1311F ALA* 3.0 33.2 + - - +
1313F LYS* 1.3 73.4 - - - +
1315F ILE* 1.3 65.2 + - - +
1317F ALA* 3.4 7.6 + - - +
1318F LEU* 3.0 23.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1315 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1097F LEU* 4.7 21.3 - - + +
1101F LEU* 3.8 34.5 - - + +
1124F ARG* 4.8 11.2 - - + +
1125F PHE* 5.3 0.7 - - - +
1128F ASP* 3.4 36.1 - - + +
1129F CYS* 5.4 3.4 - - - -
1132F ILE* 5.1 5.2 - - + -
1311F ALA 3.1 7.5 + - - +
1312F VAL* 3.2 12.1 + - - +
1314F ARG* 1.3 77.7 - - - +
1316F HIS* 1.3 65.2 + - - +
1318F LEU* 3.0 10.7 + - + +
1319F LEU* 3.0 40.4 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with HIS1316 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
999F ARG 4.0 19.6 - - - +
1000F ALA* 3.4 27.3 + - + -
1003F LYS* 3.2 32.6 - - + +
1004F TYR* 3.7 19.2 + - + -
1097F LEU* 4.6 17.5 - - + +
1312F VAL* 2.9 31.2 + - + +
1313F LYS 3.2 4.9 + - - +
1315F ILE* 1.3 79.4 - - - +
1317F ALA* 1.3 62.8 + - - +
1319F LEU* 3.3 33.3 + - + +
1320F LYS* 3.8 11.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1317 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1313F LYS* 2.9 19.8 + - + +
1314F ARG* 3.7 8.5 - - - +
1316F HIS* 1.3 77.0 - - - +
1318F LEU* 1.3 62.0 + - - +
1319F LEU 3.5 0.2 + - - -
1320F LYS* 3.9 20.7 + - - +
1321F THR* 4.3 8.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1318 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1101F LEU* 3.8 20.4 - - + -
1104F ARG* 5.5 0.7 - - + +
1105F ILE* 3.6 31.4 - - + +
1112F PHE* 5.4 6.5 - - + -
1121F ILE* 4.8 22.4 - - + +
1124F ARG* 3.6 35.2 - - + +
1314F ARG 3.0 12.7 + - - +
1315F ILE* 3.0 12.3 + - + +
1317F ALA* 1.3 76.3 - - - +
1319F LEU* 1.3 65.8 + - - +
1320F LYS 3.4 0.5 + - - -
1321F THR* 3.4 20.4 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1319 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1097F LEU* 5.3 4.5 - - + +
1100F SER* 3.8 24.0 - - - +
1101F LEU* 3.6 41.1 - - + +
1104F ARG* 3.7 27.3 - - + +
1315F ILE* 3.0 27.5 + - + +
1316F HIS* 3.5 34.5 - - + +
1317F ALA 3.2 1.0 - - - -
1318F LEU* 1.3 79.2 - - - +
1320F LYS* 1.3 60.8 + - + +
1321F THR 3.6 5.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS1320 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
999F ARG* 5.0 15.5 - - + +
1316F HIS 4.2 8.1 - - - +
1317F ALA* 4.2 15.3 - - - +
1318F LEU 3.4 0.4 - - - -
1319F LEU* 1.3 76.7 - - + +
1321F THR* 1.3 67.3 + - - +
1322F GLU 5.0 0.3 - - - -
1323F ALA* 5.1 2.1 + - - -
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il