Contacts of the helix formed by residues 355 - 402 (chain B) in PDB entry 5YWB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 355 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323B ILE* 4.6 6.2 - - + +
326B HIS* 3.5 36.8 - - + +
354B ASN* 1.3 77.8 - - - +
356B TYR* 1.3 70.0 + - + +
357B VAL* 3.2 1.7 - - - +
358B LEU* 2.9 30.2 + - + +
359B ALA* 3.2 4.7 + - - +
1268B ILE* 3.6 25.8 - - + +
1272B LEU* 6.6 0.2 - - + -
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Residues in contact with TYR 356 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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93B ILE* 6.1 5.6 - - + -
326B HIS* 6.4 1.1 - + - -
354B ASN 5.7 2.5 - - - -
355B ALA* 1.3 78.4 - - + +
357B VAL* 1.3 67.2 + - - +
359B ALA* 3.0 8.0 + - - +
360B VAL* 2.9 29.7 + - + +
1268B ILE* 3.8 30.3 - - + +
1269B SER* 6.0 4.5 - - - -
1272B LEU* 6.1 0.7 - - - +
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Residues in contact with VAL 357 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87B CYS* 6.3 1.3 - - - -
90B ALA* 4.4 24.0 - - + -
94B LEU* 6.4 1.3 - - + -
354B ASN* 3.2 45.1 - - - +
356B TYR* 1.3 78.2 - - - +
358B LEU* 1.3 64.4 + - + +
360B VAL* 4.6 5.4 - - - +
361B LEU* 2.9 63.2 + - + +
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Residues in contact with LEU 358 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319B CYS* 4.4 14.0 - - + +
322B GLY* 3.4 37.9 - - - +
323B ILE* 3.5 20.6 - - + +
326B HIS* 5.1 1.6 - - + -
354B ASN* 3.3 28.7 - - - +
355B ALA* 2.9 14.1 + - + +
357B VAL* 1.3 86.2 - - + +
359B ALA* 1.3 54.6 + - - +
361B LEU* 3.8 9.3 - - + +
362B LEU* 2.9 32.4 + - - +
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Residues in contact with ALA 359 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323B ILE* 4.2 13.8 - - + +
355B ALA 3.2 9.0 + - - +
356B TYR* 3.0 12.6 + - + +
358B LEU* 1.3 77.9 - - - +
360B VAL* 1.3 59.2 + - + +
362B LEU* 3.3 6.3 + - - +
363B PHE* 2.9 30.1 + - - +
1261B LEU* 4.1 13.4 - - + +
1264B ALA* 5.1 11.4 - - + -
1265B ALA* 5.4 5.8 - - + +
1268B ILE* 5.2 13.2 - - + -
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Residues in contact with VAL 360 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86B VAL* 3.9 29.4 - - + -
356B TYR* 2.9 19.7 + - + +
357B VAL* 3.9 5.2 - - - +
359B ALA* 1.3 75.9 - - + +
361B LEU* 1.3 61.7 + - + +
363B PHE* 3.3 12.0 + - + +
364B LEU* 3.0 30.6 + - + +
1261B LEU* 5.1 4.3 - - + -
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Residues in contact with LEU 361 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B PHE* 4.8 22.2 - - + -
86B VAL* 4.8 11.2 - - + -
87B CYS* 5.4 8.3 - - - -
319B CYS* 5.7 0.2 - - - -
357B VAL* 2.9 45.1 + - + +
358B LEU* 4.0 10.1 - - + +
360B VAL* 1.3 85.8 - - + +
362B LEU* 1.3 57.6 + - - +
364B LEU* 3.4 9.3 + - + +
365B ALA* 2.9 30.4 + - - +
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Residues in contact with LEU 362 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316B GLY* 4.3 4.3 - - - +
319B CYS* 3.7 28.4 - - + +
320B ILE* 4.2 20.4 - - + -
323B ILE* 4.1 19.3 - - + -
358B LEU 2.9 17.9 + - - +
359B ALA* 3.6 5.8 - - - +
361B LEU* 1.3 74.1 - - - +
363B PHE* 1.3 69.6 + - + +
365B ALA* 3.2 5.6 + - - +
366B LEU* 2.9 58.7 + - + +
1260B VAL* 4.4 14.8 - - + +
1261B LEU* 5.6 1.8 - - - -
1264B ALA* 5.2 10.5 - - + -
1285B LEU* 4.9 3.6 - - + -
1289B LEU* 5.1 3.4 - - + -
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Residues in contact with PHE 363 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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359B ALA 2.9 17.6 + - - +
360B VAL* 3.6 10.8 - - + +
362B LEU* 1.3 83.5 - - + +
364B LEU* 1.3 65.8 + - + +
366B LEU* 3.8 4.4 - - - +
367B LEU* 3.0 44.9 + - + +
1257B ALA* 3.5 35.9 - - + -
1258B CYS* 4.2 8.3 - - - -
1260B VAL* 5.4 1.1 - - + -
1261B LEU* 3.4 49.4 - - + +
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Residues in contact with LEU 364 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82B LEU* 5.9 7.9 - - + -
83B PHE* 3.8 39.9 - - + -
86B VAL* 5.2 13.9 - - + -
360B VAL* 3.0 19.8 + - + +
361B LEU* 3.6 9.4 - - + +
363B PHE* 1.3 83.9 - - + +
365B ALA* 1.3 68.0 + - - +
367B LEU* 3.3 8.8 + - + +
368B LEU* 2.9 38.9 + - + +
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Residues in contact with ALA 365 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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312B LEU* 4.6 14.4 - - + +
315B ALA* 5.4 4.5 - - + -
316B GLY* 5.4 6.1 - - - +
361B LEU 2.9 17.8 + - - +
362B LEU* 3.6 7.6 - - - +
364B LEU* 1.3 80.7 - - + +
366B LEU* 1.3 65.0 + - + +
368B LEU* 3.2 8.3 + - - +
369B GLN* 2.9 39.8 + - - +
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Residues in contact with LEU 366 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316B GLY* 4.5 8.7 - - - -
362B LEU* 2.9 41.4 + - + +
363B PHE* 3.8 4.0 - - - +
365B ALA* 1.3 76.3 - - + +
367B LEU* 1.3 62.4 + - - +
369B GLN* 3.2 22.6 + - - +
370B ARG* 3.0 48.4 + - - +
1257B ALA* 5.2 5.4 - - + -
1260B VAL* 3.5 34.3 - - + -
1289B LEU* 3.6 30.7 - - + -
1292B SER* 4.4 5.6 - - - +
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Residues in contact with LEU 367 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363B PHE* 3.0 42.0 + - + +
364B LEU* 3.6 8.3 - - + +
366B LEU* 1.3 74.5 - - - +
368B LEU* 1.3 71.0 + - + +
370B ARG* 3.2 9.6 + - - +
371B THR* 3.0 36.6 + - - +
1254B TYR* 3.6 30.7 - - + +
1257B ALA* 4.7 11.0 - - + +
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Residues in contact with LEU 368 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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312B LEU* 3.7 30.5 - - + -
364B LEU* 2.9 33.2 + - + +
365B ALA* 3.2 5.6 + - - +
367B LEU* 1.3 84.1 - - + +
369B GLN* 1.3 63.2 + - - +
371B THR* 3.2 5.1 + - + -
372B PHE* 3.0 59.6 + - + +
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Residues in contact with GLN 369 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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309B ALA* 4.0 14.6 - - + +
312B LEU* 2.8 45.4 + - + +
313B GLY* 3.2 23.6 + - - +
316B GLY* 4.3 3.0 - - - +
365B ALA* 2.9 27.5 + - - +
366B LEU* 3.6 17.8 - - - +
368B LEU* 1.3 75.0 - - - +
370B ARG* 1.3 100.9 + - - +
372B PHE* 4.0 0.2 - - - -
373B LEU* 2.9 29.9 + - + +
1293B ASN* 4.9 1.6 + - - -
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Residues in contact with ARG 370 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366B LEU* 3.0 40.1 + - - +
367B LEU* 3.2 8.3 + - - +
369B GLN* 1.3 122.1 + - - +
371B THR* 1.3 64.9 + - - +
373B LEU* 4.5 7.9 - - - +
374B GLN* 2.8 33.3 + - - +
1250B VAL* 6.3 0.4 - - - -
1253B GLU* 3.3 59.2 + - + +
1254B TYR* 5.7 3.4 - - + -
1257B ALA* 5.7 1.6 - - + -
1289B LEU* 4.9 4.6 + - - +
1292B SER* 4.1 16.2 + - - -
1293B ASN* 2.9 36.6 + - - +
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Residues in contact with THR 371 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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228B GLY* 4.5 27.3 - - - +
367B LEU* 3.0 20.7 + - - +
368B LEU* 3.6 11.9 - - + -
370B ARG* 1.3 77.7 - - - +
372B PHE* 1.3 71.8 + - + +
374B GLN* 3.8 4.9 - - - +
375B ALA* 3.0 27.7 + - + +
1250B VAL* 5.8 5.2 - - - +
1254B TYR* 3.4 23.4 + - - +
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Residues in contact with PHE 372 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
305B PHE* 3.5 50.6 - + - +
308B LEU* 4.6 20.6 - - + -
309B ALA* 4.1 20.0 - - + -
312B LEU* 5.5 2.9 - - + -
368B LEU* 3.0 49.3 + - + +
371B THR* 1.3 86.6 - - + +
373B LEU* 1.3 64.9 + - - +
375B ALA* 3.4 5.9 + - - +
376B SER* 2.9 25.1 + - - -
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Residues in contact with LEU 373 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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306B ARG* 3.5 37.7 - - - +
309B ALA* 4.0 14.0 - - + +
369B GLN* 2.9 21.9 + - + +
370B ARG* 3.7 13.2 - - - +
372B PHE* 1.3 76.6 - - - +
374B GLN* 1.3 72.5 + - - +
376B SER* 3.2 6.0 + - - -
377B TYR* 3.0 54.6 + - + +
1253B GLU* 5.3 4.3 - - - +
1293B ASN* 5.2 6.7 - - - +
1296B ASN* 6.3 0.7 - - - +
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Residues in contact with GLN 374 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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228B GLY 5.3 0.4 - - - +
230B TYR* 3.5 10.4 + - + +
370B ARG* 2.8 38.7 + - - +
371B THR 3.8 3.1 - - - +
373B LEU* 1.3 84.5 - - - +
375B ALA* 1.3 58.6 + - - +
377B TYR* 3.3 18.9 + - - +
378B TYR* 2.9 23.7 + - - +
1246B ARG* 3.8 7.2 - - - -
1249B GLU* 3.5 28.4 - - + +
1250B VAL* 3.6 35.0 - - + +
1253B GLU* 3.8 21.3 + - - +
1296B ASN* 3.4 20.7 + - - +
1300B ARG* 4.2 1.0 + - - -
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Residues in contact with ALA 375 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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227B LYS* 4.7 12.6 - - - +
228B GLY* 5.3 10.7 + - - -
230B TYR* 4.0 9.6 + - - +
305B PHE* 3.9 23.6 - - + -
371B THR* 3.0 18.5 + - + +
372B PHE* 3.7 5.4 - - - +
373B LEU 3.3 0.2 - - - -
374B GLN* 1.3 77.5 - - - +
376B SER* 1.3 61.3 + - - +
378B TYR* 3.2 3.9 + - - +
379B VAL* 3.0 30.4 + - + +
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Residues in contact with SER 376 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
301B LEU* 6.2 0.2 - - - -
302B SER* 3.4 32.9 + - - +
305B PHE* 4.0 10.9 - - - -
306B ARG* 3.8 20.9 - - - +
372B PHE 2.9 14.0 + - - -
373B LEU* 3.5 10.4 + - - +
375B ALA* 1.3 77.0 - - - +
377B TYR* 1.3 64.4 + - - +
379B VAL* 3.3 2.9 + - - +
380B ALA* 3.0 24.1 + - - +
436B PRO* 5.0 6.4 - - - +
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Residues in contact with TYR 377 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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306B ARG* 5.8 1.8 + - - -
373B LEU* 3.0 46.9 + - + +
374B GLN* 3.3 18.6 + - - +
376B SER* 1.3 77.4 + - - +
378B TYR* 1.3 62.5 + - - +
380B ALA* 3.3 7.2 + - + +
381B ILE* 3.0 29.3 + - + +
433B PHE* 5.3 11.7 - - + -
434B LEU* 6.3 2.7 - - + -
437B ASN* 4.7 22.1 + - + -
1246B ARG* 3.2 35.0 - - - +
1296B ASN* 6.0 1.1 - - - -
1297B TRP* 5.6 5.7 - - - -
1300B ARG* 4.2 20.2 + - - -
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Residues in contact with TYR 378 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217B PHE* 3.6 10.2 - + - -
219B GLN* 3.0 43.8 - - + +
227B LYS* 5.6 7.6 - - + -
230B TYR* 3.1 35.7 - + - +
374B GLN 2.9 6.6 + - - +
375B ALA* 3.2 6.5 + - - +
377B TYR* 1.3 77.5 - - - +
379B VAL* 1.3 74.6 + - + +
381B ILE* 3.2 8.6 + - + +
382B GLU* 2.5 66.1 + - + +
1239B LEU* 4.9 6.7 - - + -
1242B THR* 5.6 4.3 - - + -
1243B ALA* 5.4 11.2 - - + -
1246B ARG* 3.9 15.8 - - + +
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Residues in contact with VAL 379 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
227B LYS* 5.6 6.7 - - - +
298B ARG* 3.6 50.5 - - + +
301B LEU* 4.7 15.0 - - + -
302B SER* 4.2 11.2 - - - +
305B PHE* 6.5 0.2 - - + -
375B ALA* 3.0 19.8 + - + +
376B SER 4.0 2.7 - - - +
378B TYR* 1.3 89.2 - - + +
380B ALA* 1.3 66.6 + - - +
382B GLU* 3.2 8.5 + - + +
383B THR* 3.0 22.7 + - - +
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Residues in contact with ALA 380 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299B LEU* 5.7 1.3 - - - -
302B SER* 4.3 4.6 - - - -
376B SER 3.0 17.2 + - - +
377B TYR* 3.6 9.0 - - + +
379B VAL* 1.3 77.4 - - - +
381B ILE* 1.3 57.1 + - + +
383B THR* 3.3 8.0 + - - -
384B GLY* 2.9 23.4 + - - -
432B PHE 4.0 8.5 - - - +
433B PHE* 3.8 18.2 - - - +
436B PRO* 3.7 32.3 - - + -
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Residues in contact with ILE 381 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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377B TYR* 3.0 18.2 + - + +
378B TYR* 3.2 9.4 + - + +
380B ALA* 1.3 76.3 - - + +
382B GLU* 1.3 63.6 + - - +
384B GLY* 3.2 1.0 + - - -
385B ILE* 2.9 33.5 + - + +
430B TRP* 5.8 0.4 - - + -
433B PHE* 3.5 47.0 - - + -
1239B LEU* 5.3 0.7 - - + -
1242B THR* 3.3 43.7 - - + +
1246B ARG* 4.1 16.4 - - - +
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Residues in contact with GLU 382 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217B PHE* 4.2 6.9 - - - -
219B GLN* 4.9 0.3 - - - +
220B PRO* 5.9 0.7 - - - +
257B MET* 3.7 30.6 - - - +
378B TYR* 2.5 58.3 + - + +
379B VAL* 3.2 12.8 + - + +
381B ILE* 1.3 77.0 - - - +
383B THR* 1.3 63.7 + - - +
385B ILE* 3.3 3.8 + - - +
386B ASN* 3.0 32.4 + - - +
1239B LEU* 3.2 24.6 - - + +
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Residues in contact with THR 383 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295B PHE* 3.3 41.3 - - + -
298B ARG* 3.8 22.9 - - - +
299B LEU* 4.2 11.7 + - + -
379B VAL 3.0 14.1 + - - -
380B ALA* 3.3 10.3 + - - -
382B GLU* 1.3 75.7 - - - +
384B GLY* 1.3 57.7 + - - +
386B ASN* 3.4 6.1 + - - +
387B LEU* 2.9 27.2 + - - +
432B PHE* 3.5 19.3 - - + -
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Residues in contact with GLY 384 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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380B ALA 2.9 11.8 + - - -
381B ILE 3.2 3.1 + - - -
382B GLU 3.2 0.2 - - - -
383B THR* 1.3 77.0 - - - +
385B ILE* 1.3 57.0 + - - +
387B LEU* 3.2 9.5 + - - +
388B ARG 2.9 23.9 + - - -
429B MET* 3.7 16.7 - - - +
432B PHE* 4.3 14.1 - - - -
433B PHE* 3.7 16.4 - - - -
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Residues in contact with ILE 385 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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257B MET* 5.2 11.4 - - + -
381B ILE* 2.9 32.8 + - + +
382B GLU* 4.0 4.7 - - - +
384B GLY* 1.3 75.3 - - - +
386B ASN* 1.3 63.2 + - - +
388B ARG* 3.2 9.9 + - - +
389B GLY* 3.0 21.1 + - - -
429B MET* 4.7 10.8 - - + -
433B PHE* 5.0 2.0 - - + -
1235B ASN* 3.5 38.0 + - + +
1238B SER* 3.3 25.6 - - - +
1239B LEU* 3.8 35.9 - - + +
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Residues in contact with ASN 386 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
256B ALA 4.7 5.6 + - - -
257B MET* 3.9 36.1 - - - +
262B ASN* 2.6 41.5 + - - +
295B PHE* 4.4 7.0 - - + -
382B GLU* 3.0 25.3 + - - +
383B THR* 3.8 6.3 - - - +
385B ILE* 1.3 77.9 - - - +
387B LEU* 1.3 62.7 + - - +
389B GLY* 3.4 1.5 + - - -
390B ALA* 3.0 25.9 + - - +
1235B ASN* 5.5 3.0 + - - +
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Residues in contact with LEU 387 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291B LEU* 3.9 27.8 - - + -
295B PHE* 2.9 45.0 - - + -
383B THR 2.9 9.7 + - - +
384B GLY* 3.2 11.9 + - - +
386B ASN* 1.3 76.8 - - - +
388B ARG* 1.3 68.4 + - + +
390B ALA* 3.3 3.3 + - - +
391B ILE* 2.9 32.4 + - + +
425B THR 5.7 0.2 - - - +
428B LEU* 3.5 48.5 - - + +
429B MET* 4.2 2.5 - - - +
432B PHE* 4.6 13.5 - - + -
----------------------------------------------------------
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Residues in contact with ARG 388 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384B GLY 2.9 14.1 + - - +
385B ILE* 3.2 8.6 + - - +
387B LEU* 1.3 79.3 - - + +
389B GLY* 1.3 63.7 + - - +
391B ILE* 3.5 8.8 - - - +
392B GLN* 2.9 49.7 + - - +
425B THR* 3.4 35.6 - - + +
429B MET* 3.5 35.5 - - + +
1193B ASP* 5.8 1.2 + - - -
1197B GLN* 5.6 6.3 - - - +
1234B ASN* 2.9 35.3 + - - +
1235B ASN* 3.4 23.2 + - - -
1238B SER* 3.4 27.8 + - - -
----------------------------------------------------------
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Residues in contact with GLY 389 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259B ALA* 4.6 9.3 - - - +
262B ASN* 5.9 0.7 - - - -
385B ILE 3.0 11.3 + - - -
386B ASN* 3.8 2.2 - - - -
388B ARG* 1.3 79.1 - - - +
390B ALA* 1.3 61.0 + - - +
392B GLN* 3.6 10.4 - - - +
393B THR* 3.0 28.2 + - - +
1231B THR* 4.3 4.8 + - - -
1235B ASN* 3.8 22.4 - - - +
----------------------------------------------------------
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Residues in contact with ALA 390 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
262B ASN* 3.9 27.9 - - + +
263B TYR* 4.1 4.0 - - - +
266B LEU* 3.8 21.6 - - + +
295B PHE* 6.0 1.3 - - + -
386B ASN 3.0 17.5 + - - +
387B LEU* 3.8 4.9 - - - +
389B GLY* 1.3 76.0 - - - +
391B ILE* 1.3 58.9 - - + +
393B THR* 3.1 11.5 - - - +
394B LYS* 2.9 28.8 + - - +
----------------------------------------------------------
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Residues in contact with ILE 391 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266B LEU* 4.4 6.7 - - + -
291B LEU* 4.1 26.2 - - + -
387B LEU* 2.9 28.4 + - + +
388B ARG* 3.5 10.5 - - - +
390B ALA* 1.3 74.6 - - + +
392B GLN* 1.3 76.9 + - + +
394B LYS* 3.7 7.8 - - + +
395B ILE* 2.9 38.6 + - + +
421B VAL* 5.7 2.0 - - - +
424B ASP* 5.1 5.2 - - + -
425B THR* 4.9 15.5 - - - +
428B LEU* 4.5 17.0 - - + -
610B LEU* 4.5 26.9 - - + -
----------------------------------------------------------
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Residues in contact with GLN 392 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388B ARG* 2.9 41.9 + - - +
389B GLY* 3.6 4.1 - - - +
391B ILE* 1.3 82.4 - - + +
393B THR* 1.3 58.3 + - - +
395B ILE* 3.2 12.3 - - + +
396B TYR* 2.9 28.9 + - - +
421B VAL* 4.5 19.6 - - + +
425B THR* 2.7 30.0 + - - +
1200B LEU* 4.2 23.0 - - + +
1201B LEU* 6.3 0.2 - - - +
1204B PHE* 4.0 8.4 - - + -
1227B LEU* 5.0 2.9 - - + -
1231B THR* 3.3 24.2 + - - +
1234B ASN* 4.9 3.2 + - - +
1235B ASN* 5.0 0.5 - - - +
----------------------------------------------------------
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Residues in contact with THR 393 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259B ALA* 4.2 9.9 - - + +
263B TYR* 3.4 35.0 - - + +
389B GLY 3.0 20.0 + - - +
390B ALA* 3.1 15.9 - - - +
392B GLN* 1.3 76.0 - - - +
394B LYS* 1.3 56.4 + - - +
396B TYR* 3.8 0.7 - - - +
397B ASN* 2.9 28.9 + - - +
1224B GLN* 4.0 13.0 + - - -
1227B LEU* 4.2 19.5 - - - +
1228B LEU* 4.1 16.7 - - - +
1231B THR* 5.5 2.4 + - - +
----------------------------------------------------------
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Residues in contact with LYS 394 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263B TYR* 3.9 20.0 - - + -
266B LEU* 3.6 30.2 + - + +
267B CYS* 4.3 15.3 - - - -
270B PHE* 3.3 47.9 - - - +
287B ILE* 5.3 4.2 - - - +
290B ALA* 6.0 0.4 - - - +
390B ALA 2.9 18.1 + - - +
391B ILE* 3.7 7.4 - - + +
393B THR* 1.3 78.6 - - - +
395B ILE* 1.3 61.1 + - + +
397B ASN* 3.3 5.1 + - - +
398B LYS* 3.0 27.5 + - + +
614B LEU* 4.4 24.8 - - + +
----------------------------------------------------------
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Residues in contact with ILE 395 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391B ILE* 2.9 22.9 + - + +
392B GLN* 3.2 16.4 - - + +
394B LYS* 1.3 78.0 - - + +
396B TYR* 1.3 60.0 + - - +
398B LYS* 3.3 10.1 + - - +
399B ILE* 2.9 34.7 + - + +
420B LEU* 3.7 15.5 - - + -
421B VAL* 3.6 35.9 - - + -
610B LEU* 3.5 33.4 - - + -
613B PHE* 4.5 12.1 - - + -
614B LEU* 6.3 2.9 - - + -
1204B PHE* 3.9 8.1 - - + -
----------------------------------------------------------
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Residues in contact with TYR 396 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392B GLN 2.9 17.6 + - - +
393B THR 3.8 1.8 - - - +
394B LYS 3.2 0.2 - - - -
395B ILE* 1.3 79.2 - - - +
397B ASN* 1.3 61.2 + - - +
399B ILE* 3.4 14.4 + - + +
400B MET* 3.7 17.8 - - - +
1203B HIS* 3.6 22.7 + + - -
1204B PHE* 3.8 23.3 - + + -
1207B THR* 3.6 29.2 + - + +
1220B GLU 5.6 0.4 - - - -
1223B PHE* 3.1 33.0 + - - +
1224B GLN* 3.6 39.5 - - - -
1227B LEU* 3.4 37.7 - - + -
----------------------------------------------------------
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Residues in contact with ASN 397 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263B TYR* 3.6 24.4 + - + +
393B THR 2.9 17.3 + - - +
394B LYS 3.6 5.3 - - - +
396B TYR* 1.3 77.1 - - - +
398B LYS* 1.3 66.0 + - - +
400B MET* 3.3 22.0 + - - +
401B HIS* 3.6 21.8 + - - -
1224B GLN* 3.8 30.5 + - - +
----------------------------------------------------------
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Residues in contact with LYS 398 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394B LYS* 3.0 17.0 + - + +
395B ILE* 3.3 7.8 + - - +
396B TYR 3.3 0.2 - - - -
397B ASN* 1.3 76.5 + - - +
399B ILE* 1.3 65.9 + - - +
400B MET 3.0 3.0 + - - -
401B HIS* 3.4 9.6 + - + +
402B LEU* 3.2 19.3 + - - +
610B LEU* 6.1 0.4 - - - -
613B PHE* 3.2 59.1 + - - +
614B LEU* 3.4 46.9 - - + +
616B SER* 4.2 9.4 + - - +
----------------------------------------------------------
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Residues in contact with ILE 399 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395B ILE* 2.9 20.7 + - + +
396B TYR* 3.7 8.3 - - + +
397B ASN 3.3 0.6 - - - -
398B LYS* 1.3 78.0 - - - +
400B MET* 1.3 64.5 + - - +
402B LEU* 3.3 22.1 - - + +
417B ILE* 3.7 26.7 - - + -
613B PHE* 4.0 18.4 - - + -
1204B PHE* 3.5 32.3 - - + -
1207B THR* 4.6 14.4 - - + -
1208B VAL* 3.8 16.2 - - + -
1211B LEU* 4.0 28.0 - - + +
----------------------------------------------------------
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Residues in contact with MET 400 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396B TYR* 3.7 30.3 - - + +
397B ASN* 3.3 19.3 - - - +
398B LYS 3.0 0.4 - - - -
399B ILE* 1.3 82.1 - - - +
401B HIS* 1.3 67.6 + - + +
402B LEU 3.0 1.4 + - - -
1207B THR* 4.6 11.0 - - + -
1211B LEU* 4.6 8.3 - - + -
1214B ILE* 4.1 21.1 - - + -
1215B ARG* 2.8 46.2 + - + -
1220B GLU* 3.8 41.5 - - + +
1223B PHE* 5.8 0.7 - - + -
1224B GLN* 4.7 8.3 - - - +
----------------------------------------------------------
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Residues in contact with HIS 401 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397B ASN* 3.6 30.6 + - - -
398B LYS* 3.4 11.2 + - + +
400B MET* 1.3 79.1 - - + +
402B LEU* 1.3 62.7 + - - +
617B ALA 4.6 0.4 - - - -
618B GLU* 3.3 26.7 - - + -
619B ILE* 3.0 51.1 + - + +
1215B ARG* 4.0 1.1 - - - -
1220B GLU* 5.6 4.3 - - - -
----------------------------------------------------------
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Residues in contact with LEU 402 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398B LYS* 3.2 11.9 + - - +
399B ILE* 3.3 18.7 - - + +
400B MET 3.0 2.0 - - - +
401B HIS* 1.3 77.2 - - - +
403B SER* 1.3 78.1 + - - +
404B THR* 5.0 0.2 - - - -
406B ASN* 4.3 6.1 - - + +
407B LEU* 4.4 21.8 - - + +
412B MET* 4.0 20.0 - - + -
417B ILE* 4.9 4.0 - - + -
613B PHE* 4.1 21.8 - - + -
616B SER* 3.8 22.0 - - - +
617B ALA 3.9 6.3 - - - -
1211B LEU* 4.4 14.8 - - + -
1215B ARG* 2.4 38.0 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il