Contacts of the helix formed by residues 572 - 615 (chain B) in PDB entry 5YWB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 572 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321B PHE* 5.2 0.5 - - - -
325B ASP* 4.2 11.0 + - - -
570B ASP 3.0 8.5 + - - -
571B LEU* 1.3 74.6 - - - +
573B PRO* 1.3 77.5 - - - +
574B SER* 2.9 8.3 + - - -
575B VAL* 2.9 31.9 + - - +
576B ALA* 3.5 6.1 + - - +
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Residues in contact with PRO 573 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324B VAL* 4.3 9.2 - - + -
571B LEU 3.5 3.5 - - - +
572B SER* 1.3 86.3 - - - +
574B SER* 1.3 62.6 + - - +
576B ALA* 3.1 9.9 + - + +
577B PHE* 3.0 46.7 + - + -
1038B THR* 3.9 15.3 - - - +
1039B ASP* 3.8 35.9 - - + +
1278B ALA* 5.7 5.6 - - + +
1279B GLY* 5.9 1.8 - - - -
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Residues in contact with SER 574 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320B ILE* 5.7 0.2 - - - +
321B PHE* 3.5 32.4 - - - +
324B VAL* 3.2 28.5 + - - +
325B ASP* 2.5 32.8 + - - -
572B SER* 2.9 5.6 + - - -
573B PRO* 1.3 77.9 - - - +
575B VAL* 1.3 63.1 + - - +
577B PHE* 3.4 1.1 + - - +
578B ALA* 2.9 27.5 + - - +
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Residues in contact with VAL 575 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321B PHE* 3.8 19.7 - - + -
455B ILE* 3.4 38.8 - - + +
456B LEU* 5.3 1.6 - - - -
559B PHE* 5.9 2.0 - - + -
562B HIS* 6.2 2.2 - - + +
571B LEU* 4.8 12.6 - - + -
572B SER* 2.9 28.2 + - - +
574B SER* 1.3 74.5 - - - +
576B ALA* 1.3 64.3 + - - +
578B ALA* 3.9 0.7 - - - +
579B SER* 2.9 26.2 + - - -
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Residues in contact with ALA 576 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
559B PHE* 3.4 34.5 - - + -
571B LEU* 4.5 3.8 - - + +
572B SER 3.5 3.3 + - - +
573B PRO* 3.1 17.6 + - + +
575B VAL* 1.3 78.6 - - - +
577B PHE* 1.3 61.0 + - + +
579B SER* 2.3 21.1 + - - -
580B LEU* 3.0 12.5 + - - +
1034B LEU* 4.5 9.9 - - + -
1038B THR* 4.4 17.0 - - + -
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Residues in contact with PHE 577 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320B ILE* 4.9 8.7 - - + -
324B VAL* 5.3 2.5 - - + -
573B PRO* 3.0 44.1 + - + +
574B SER* 4.2 3.1 - - - +
576B ALA* 1.3 77.6 - - + +
578B ALA* 1.3 60.6 + - - +
580B LEU* 3.2 14.5 + - + +
581B SER* 2.9 33.9 + - - -
1031B ASP* 5.0 1.8 - - + -
1034B LEU* 5.1 6.7 - - + -
1035B ALA* 3.4 34.1 - - + -
1038B THR* 4.4 3.1 - - - -
1279B GLY* 4.0 6.7 - - - -
1282B GLY* 3.4 21.5 - - - -
1283B LEU* 3.3 35.4 - - + -
1286B THR* 3.3 26.9 + - + +
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Residues in contact with ALA 578 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317B PRO* 4.1 13.4 - - + +
318B LEU* 5.7 0.2 - - - -
320B ILE* 5.0 3.4 - - - +
321B PHE* 3.9 25.1 - - + -
455B ILE* 4.4 15.9 - - + -
574B SER 2.9 18.4 + - - +
575B VAL* 3.9 3.6 - - - +
577B PHE* 1.3 76.9 - - - +
579B SER* 1.3 58.4 + - - +
581B SER* 3.3 7.5 + - - -
582B LEU* 3.0 35.5 + - + +
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Residues in contact with SER 579 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452B LEU* 6.5 0.7 - - - -
455B ILE* 4.8 10.0 - - - +
559B PHE* 3.0 23.8 - - - -
575B VAL* 2.9 15.3 + - - -
576B ALA 2.3 26.9 + - - -
578B ALA* 1.3 77.0 - - - +
580B LEU* 1.3 55.3 + - - +
582B LEU* 3.5 7.2 + - - +
583B PHE* 2.9 32.8 + - - +
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Residues in contact with LEU 580 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555B VAL* 5.2 12.6 - - + -
559B PHE* 5.7 4.9 - - + -
576B ALA 3.0 8.4 + - - +
577B PHE* 3.6 19.1 - - + +
579B SER* 1.3 81.1 + - - +
581B SER* 1.3 57.8 + - - +
583B PHE* 3.4 20.2 + - + +
584B HIS* 2.9 30.7 + - + +
1027B LEU* 6.4 1.3 - - + -
1031B ASP* 3.7 31.0 - - + +
1283B LEU* 6.2 0.2 - - + -
1286B THR* 4.1 22.0 - - + -
1287B TYR* 5.9 1.8 - - + -
1290B MET* 5.2 5.6 - - + -
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Residues in contact with SER 581 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317B PRO* 3.7 24.7 - - - -
320B ILE* 4.3 11.1 - - - +
577B PHE 2.9 18.1 + - - -
578B ALA* 3.6 5.6 - - - -
579B SER 3.2 0.2 - - - -
580B LEU* 1.3 75.1 - - - +
582B LEU* 1.3 67.5 + - - +
584B HIS* 3.1 7.1 + - - +
585B ILE* 3.0 29.6 + - - +
1286B THR* 3.7 22.2 + - - +
1289B LEU* 4.9 5.5 - - - +
1290B MET* 5.6 1.6 - - - -
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Residues in contact with LEU 582 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314B PHE* 4.2 26.0 - - + +
317B PRO* 4.4 12.5 - - + +
448B GLY* 4.7 10.2 - - - +
451B LEU* 3.8 41.1 - - + -
452B LEU* 4.2 20.6 - - + +
455B ILE* 3.7 29.8 - - + -
578B ALA* 3.0 17.8 + - + +
579B SER* 4.0 5.2 - - - +
581B SER* 1.3 74.7 - - - +
583B PHE* 1.3 57.2 + - - +
585B ILE* 3.3 7.5 + - + +
586B LEU* 2.9 27.9 + - - +
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Residues in contact with PHE 583 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466B VAL* 6.2 0.4 - - + -
551B PRO* 3.1 56.1 - - + -
552B ILE* 4.3 2.0 - - + -
554B ALA* 4.6 7.6 - - + -
555B VAL* 3.4 22.9 - - + -
579B SER 2.9 20.2 + - - +
580B LEU* 3.5 17.7 - - + +
582B LEU* 1.3 77.5 - - - +
584B HIS* 1.3 63.9 + - + +
586B LEU* 3.1 15.5 + - + +
587B VAL* 2.9 46.3 + - + +
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Residues in contact with HIS 584 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
580B LEU* 2.9 19.6 + - + +
581B SER* 3.1 5.1 + - - +
583B PHE* 1.3 80.2 - - + +
585B ILE* 1.3 71.3 + - + +
587B VAL* 3.0 22.5 + - + +
588B THR* 3.1 20.6 + - - -
1027B LEU* 6.2 2.7 - - + -
1149B LEU* 4.7 12.1 - - + -
1290B MET* 3.5 41.2 - - + +
1294B TYR* 2.8 45.5 + + - -
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Residues in contact with ILE 585 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313B GLY* 4.8 10.8 - - - +
314B PHE* 3.4 37.0 - - + -
317B PRO* 4.7 12.8 - - + -
444B GLN* 2.9 25.1 + - - +
581B SER* 3.0 18.1 + - - +
582B LEU* 3.5 10.8 - - + +
584B HIS* 1.3 83.8 - - + +
586B LEU* 1.3 56.3 + - - +
588B THR* 3.7 4.6 + - - +
589B PRO* 3.1 13.5 - - - +
1289B LEU* 6.1 5.4 - - + +
1290B MET* 6.5 0.9 - - - -
1293B ASN* 5.1 13.0 - - - +
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Residues in contact with LEU 586 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314B PHE* 6.3 0.2 - - - -
444B GLN* 4.6 4.5 - - + +
445B ILE* 3.5 42.8 - - + +
448B GLY* 6.0 7.0 - - - -
449B VAL 6.3 0.7 - - - +
452B LEU* 5.3 9.9 - - + -
467B ILE* 3.7 37.9 - - + -
582B LEU 2.9 14.2 + - - +
583B PHE* 3.1 17.5 + - + +
585B ILE* 1.3 75.1 - - - +
587B VAL* 1.3 66.9 + - + +
589B PRO* 3.1 11.9 - - - +
590B LEU* 3.9 19.0 - - + +
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Residues in contact with VAL 587 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547B ASN* 4.5 14.1 - - + +
551B PRO* 4.0 13.7 - - + -
583B PHE* 2.9 52.1 + - + +
584B HIS* 3.0 14.5 + - + +
586B LEU* 1.3 77.2 - - + +
588B THR* 1.3 69.3 + - - +
590B LEU* 3.1 24.0 + - + +
591B PHE* 3.6 10.3 + - + +
1145B ARG* 5.8 5.8 - - - +
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Residues in contact with THR 588 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584B HIS* 3.1 15.8 + - - -
585B ILE* 4.2 4.4 - - - +
587B VAL* 1.3 79.9 - - - +
589B PRO* 1.3 69.3 - - + +
590B LEU 3.3 0.2 + - - -
591B PHE* 3.5 6.9 + - - +
592B LEU* 3.4 19.9 + - + +
1145B ARG* 4.9 8.5 + - - +
1294B TYR* 2.9 28.8 + - + +
1297B TRP* 3.9 34.5 - - + -
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Residues in contact with PRO 589 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306B ARG* 5.8 1.3 - - - +
441B MET* 4.4 25.1 - - + +
444B GLN* 3.4 32.3 - - + +
445B ILE* 5.5 4.0 - - + -
585B ILE 3.1 24.2 - - - +
586B LEU 3.1 11.7 - - - +
588B THR* 1.3 84.0 - - + +
590B LEU* 1.3 64.0 + - + +
592B LEU* 3.0 14.0 + - + +
593B LEU* 3.0 24.5 + - - +
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Residues in contact with LEU 590 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441B MET* 5.7 3.6 - - + -
445B ILE* 5.8 5.4 - - + -
467B ILE* 6.2 0.4 - - + -
470B LEU* 3.7 37.5 - - + -
474B GLN* 5.9 3.6 - - + -
547B ASN* 3.2 28.6 + - + +
551B PRO* 5.5 4.7 - - + -
586B LEU* 3.9 28.7 - - + +
587B VAL* 3.1 16.5 + - + +
589B PRO* 1.3 77.8 - - + +
591B PHE* 1.3 64.0 + - - +
592B LEU 3.3 0.2 + - - -
593B LEU* 3.4 37.2 + - + +
594B SER 3.8 2.1 + - - -
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Residues in contact with PHE 591 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544B ILE* 3.5 45.3 - - + -
547B ASN* 3.7 15.7 - - + +
548B THR* 6.1 0.4 - - - -
587B VAL* 3.6 7.6 + - + +
588B THR 3.5 8.6 + - - +
589B PRO 3.4 0.4 - - - -
590B LEU* 1.3 78.7 - - - +
592B LEU* 1.3 64.8 + - + +
594B SER* 2.7 24.8 + - - -
595B SER* 4.0 9.2 + - - -
1138B SER* 6.3 2.0 - - - -
1141B GLU* 4.4 20.9 - - + -
1142B CYS* 3.4 34.3 - - - -
1145B ARG* 3.6 37.9 - - - +
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Residues in contact with LEU 592 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
437B ASN* 3.8 27.4 - - - +
588B THR* 3.4 17.2 + - + +
589B PRO* 3.0 15.1 + - + +
591B PHE* 1.3 85.1 - - + +
593B LEU* 1.3 65.1 + - - +
595B SER* 3.1 13.6 + - - +
596B VAL* 3.0 25.4 + - + +
1142B CYS* 5.7 2.9 - - - -
1145B ARG* 5.7 0.4 - - - +
1297B TRP* 3.3 45.8 - - + -
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Residues in contact with LEU 593 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441B MET* 4.2 26.2 - - + -
474B GLN* 5.2 20.6 - - + +
478B ALA* 5.6 7.4 - - + -
589B PRO 3.0 8.3 + - - +
590B LEU* 3.4 40.6 - - + +
592B LEU* 1.3 76.6 - - - +
594B SER* 1.3 68.5 + - - +
596B VAL* 3.1 22.5 + - + +
597B VAL* 3.1 28.0 + - + +
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Residues in contact with SER 594 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474B GLN* 6.0 0.4 - - - -
481B LEU* 4.5 16.4 - - - +
536B PHE* 5.6 2.1 - - - -
540B THR* 5.6 6.9 - - - +
543B SER* 3.7 24.7 - - - -
544B ILE* 4.2 13.1 - - - +
547B ASN* 5.1 0.4 - - - -
590B LEU 3.8 4.4 + - - -
591B PHE* 2.7 23.3 + - - -
593B LEU* 1.3 89.0 - - - +
595B SER* 1.3 62.8 + - - +
597B VAL* 3.5 16.8 + - - +
598B ARG* 4.0 4.2 + - - +
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Residues in contact with SER 595 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
434B LEU* 5.0 3.7 - - - +
536B PHE* 6.5 0.4 - - - -
591B PHE* 4.3 12.0 + - - -
592B LEU* 3.1 15.1 + - - +
594B SER* 1.3 80.3 + - - +
596B VAL* 1.3 65.0 + - - +
598B ARG* 3.2 34.0 + - - +
599B SER* 3.7 5.0 + - - -
1138B SER* 4.1 21.4 - - - -
1142B CYS* 5.5 2.1 - - - -
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Residues in contact with VAL 596 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431B PHE* 6.3 0.4 - - + -
434B LEU* 4.2 37.0 - - + +
437B ASN* 5.2 5.6 - - - +
438B LEU* 3.7 29.8 - - + -
592B LEU* 3.0 23.4 + - + +
593B LEU* 3.1 17.2 + - + +
595B SER* 1.3 78.3 - - - +
597B VAL* 1.3 57.8 + - + +
599B SER* 3.0 5.9 + - - -
600B THR* 2.8 40.8 + - - +
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Residues in contact with VAL 597 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478B ALA* 4.5 21.5 - - + +
481B LEU* 3.6 22.0 - - + -
482B SER* 3.6 24.9 - - - +
485B GLN* 4.8 0.9 - - - +
593B LEU* 3.1 21.7 + - + +
594B SER* 3.8 10.8 - - - +
595B SER 3.2 0.4 - - - -
596B VAL* 1.3 76.7 - - + +
598B ARG* 1.3 61.5 + - - +
600B THR* 4.0 9.4 - - + -
601B VAL* 3.0 28.5 + - + +
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Residues in contact with ARG 598 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427B GLN* 5.9 0.2 + - - -
481B LEU* 5.0 1.0 - - - +
485B GLN* 2.9 44.1 + - - +
536B PHE* 4.1 26.7 - - + -
594B SER 4.0 2.0 + - - +
595B SER* 3.2 25.2 + - - +
596B VAL 3.1 0.6 - - - -
597B VAL* 1.3 79.0 - - - +
599B SER* 1.3 71.6 + - - +
602B LYS* 3.4 19.0 + - - +
1134B GLN* 3.2 52.5 + - - +
1135B HIS* 3.6 37.4 + - - -
1138B SER* 4.3 12.9 + - - -
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Residues in contact with SER 599 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427B GLN* 4.9 8.0 + - - +
430B TRP* 4.2 13.7 - - - +
431B PHE* 4.2 19.9 - - - +
434B LEU* 4.0 24.0 - - - +
595B SER 3.7 2.3 + - - -
596B VAL 3.0 8.0 + - - -
598B ARG* 1.3 91.4 + - - +
600B THR* 1.3 60.2 + - - +
602B LYS* 3.4 6.0 + - - +
603B ALA* 2.9 29.5 + - - +
1135B HIS* 5.9 0.7 + - - -
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Residues in contact with THR 600 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288B TRP* 5.3 0.9 - - - -
431B PHE* 4.2 25.6 - - + -
438B LEU* 4.8 2.9 - - + +
596B VAL* 2.8 34.1 + - - +
597B VAL* 3.1 10.9 + - + -
599B SER* 1.3 74.9 - - - +
601B VAL* 1.3 66.4 + - - +
603B ALA* 3.2 4.5 + - - +
604B LEU* 3.0 22.6 + - + +
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Residues in contact with VAL 601 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
482B SER* 4.6 22.4 - - - +
485B GLN* 3.2 35.2 - - + +
486B ARG* 3.4 39.5 - - + +
489B LEU* 6.3 0.7 - - + -
597B VAL* 3.0 21.3 + - + +
600B THR* 1.3 78.8 - - - +
602B LYS* 1.3 59.3 + - - +
604B LEU* 3.4 6.9 + - - +
605B VAL* 2.9 33.5 + - + +
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Residues in contact with LYS 602 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423B ILE* 6.3 1.6 - - - -
427B GLN* 3.2 47.5 - - + +
485B GLN* 4.0 8.1 - - - +
489B LEU* 3.7 40.0 - - + +
598B ARG* 3.4 25.7 + - + +
599B SER* 3.4 4.2 + - - +
600B THR 3.1 0.8 - - - -
601B VAL* 1.3 80.4 - - + +
603B ALA* 1.3 59.0 + - - +
605B VAL* 3.4 2.0 + - - +
606B SER* 2.9 33.9 + - - -
1130B ASN* 4.9 12.9 - - - +
1134B GLN* 2.4 35.6 + - - +
1135B HIS* 5.3 4.6 - - - -
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Residues in contact with ALA 603 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288B TRP* 4.1 7.9 - - + -
427B GLN* 4.6 5.5 - - - +
428B LEU* 4.5 11.0 - - + -
431B PHE* 3.5 37.2 - - + -
599B SER 2.9 17.5 + - - +
600B THR 3.6 4.5 - - - +
602B LYS* 1.3 74.1 - - - +
604B LEU* 1.3 65.6 + - - +
606B SER* 3.3 6.0 + - - -
607B VAL* 3.0 29.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 604 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288B TRP* 3.8 23.9 - - + -
486B ARG* 3.3 28.5 - - - +
600B THR* 3.0 13.8 + - + +
601B VAL* 3.5 10.1 - - + +
603B ALA* 1.3 77.4 - - - +
605B VAL* 1.3 57.2 + - + +
607B VAL* 3.3 1.4 + - - +
608B GLN* 3.0 54.2 + - + +
----------------------------------------------------------
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Residues in contact with VAL 605 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486B ARG* 3.8 36.6 - - + +
489B LEU* 3.7 31.0 - - + -
601B VAL* 2.9 25.7 + - + +
602B LYS 3.8 3.1 - - - +
604B LEU* 1.3 75.5 - - + +
606B SER* 1.3 59.9 + - - +
608B GLN* 3.3 12.1 + - + +
609B LYS* 2.9 39.6 + - - +
----------------------------------------------------------
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Residues in contact with SER 606 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423B ILE* 4.2 4.7 - - - +
424B ASP* 2.7 35.0 + - - +
427B GLN* 3.6 21.9 - - - +
428B LEU* 4.8 9.4 - - - -
489B LEU* 6.0 0.7 - - - +
602B LYS 2.9 19.8 + - - -
603B ALA* 3.7 7.4 - - - -
605B VAL* 1.3 77.3 - - - +
607B VAL* 1.3 59.3 + - - +
609B LYS* 3.4 7.8 + - - +
610B LEU* 2.9 28.4 + - - +
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Residues in contact with VAL 607 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284B ALA* 4.2 9.2 - - + +
287B ILE* 3.5 28.7 - - + -
288B TRP* 3.3 42.6 - - + -
291B LEU* 4.8 4.9 - - + -
428B LEU* 3.9 27.8 - - + -
603B ALA 3.0 14.5 + - - +
606B SER* 1.3 73.7 - - - +
608B GLN* 1.3 63.4 + - + +
610B LEU* 3.2 7.2 + - + +
611B SER* 2.8 32.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 608 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284B ALA* 4.9 13.0 - - + +
486B ARG* 5.1 11.3 + - - +
604B LEU* 3.0 46.7 + - + +
605B VAL* 3.6 10.7 - - + +
607B VAL* 1.3 78.4 - - + +
609B LYS* 1.3 56.7 + - - +
611B SER* 3.3 4.8 + - - -
612B GLU* 3.0 38.8 + - + +
----------------------------------------------------------
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Residues in contact with LYS 609 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
416B GLN* 4.2 25.1 - - + +
419B ASN* 5.6 2.2 - - - +
420B LEU* 3.8 26.5 - - + +
423B ILE* 3.7 28.1 - - - +
424B ASP* 4.0 9.0 - - - +
493B ASN* 4.5 15.4 + - - +
605B VAL* 2.9 26.6 + - + +
606B SER* 3.6 4.3 - - - +
608B GLN* 1.3 76.6 - - - +
610B LEU* 1.3 58.3 + - - +
612B GLU* 3.3 9.8 + - - +
613B PHE* 2.9 28.4 + - + +
----------------------------------------------------------
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Residues in contact with LEU 610 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287B ILE* 5.2 13.5 - - + -
291B LEU* 6.4 1.1 - - + -
391B ILE* 4.5 29.8 - - + -
395B ILE* 3.5 29.4 - - + -
398B LYS* 6.1 0.4 - - - -
420B LEU* 4.2 22.4 - - + -
424B ASP* 5.1 6.1 - - + +
428B LEU* 4.7 13.9 - - + -
606B SER 2.9 17.8 + - - +
607B VAL* 3.6 7.4 - - + +
609B LYS* 1.3 77.1 - - - +
611B SER* 1.3 57.8 + - - +
613B PHE* 3.3 6.0 + - + +
614B LEU* 2.9 31.2 + - + +
----------------------------------------------------------
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Residues in contact with SER 611 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283B GLY 4.2 3.3 + - - -
284B ALA* 3.3 40.1 + - - -
287B ILE* 3.4 22.3 - - - +
607B VAL 2.8 19.1 + - - -
608B GLN 3.8 2.0 - - - -
610B LEU* 1.3 74.4 - - - +
612B GLU* 1.3 66.1 + - - +
614B LEU* 3.3 8.7 + - - +
615B SER* 3.1 23.9 + - - -
----------------------------------------------------------
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Residues in contact with GLU 612 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
608B GLN* 3.0 23.9 + - - +
609B LYS* 3.8 8.3 - - - +
611B SER* 1.3 77.0 - - - +
613B PHE* 1.3 62.5 + - - +
615B SER* 3.4 19.9 + - - -
616B SER* 3.9 2.3 + - - -
----------------------------------------------------------
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Residues in contact with PHE 613 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395B ILE* 4.5 6.7 - - + -
398B LYS* 3.2 39.9 - - - -
399B ILE* 4.0 16.6 - - + -
402B LEU* 4.1 14.4 - - + -
411B GLU 5.0 8.5 - - - -
412B MET* 5.0 4.3 - - + -
417B ILE* 3.7 41.1 - - + -
420B LEU* 3.8 31.9 - - + -
609B LYS* 2.9 17.0 + - + +
610B LEU* 3.6 13.9 - - + +
611B SER 3.2 0.2 - - - -
612B GLU* 1.3 76.7 - - - +
614B LEU* 1.3 64.3 + - - +
615B SER 3.1 0.4 + - - -
616B SER* 3.2 24.0 + - - -
----------------------------------------------------------
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Residues in contact with LEU 614 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270B PHE* 4.0 27.8 - - + -
283B GLY 6.3 0.9 - - - +
287B ILE* 5.2 8.7 - - + -
394B LYS* 4.4 30.1 - - + +
395B ILE* 6.3 2.9 - - + -
398B LYS* 3.4 33.2 - - + +
610B LEU* 2.9 21.6 + - + +
611B SER* 3.3 8.5 + - - +
613B PHE* 1.3 76.5 - - - +
615B SER* 1.3 58.2 + - - +
616B SER* 3.2 9.4 + - - +
----------------------------------------------------------
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Residues in contact with SER 615 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
611B SER 3.1 15.9 + - - -
612B GLU* 3.8 11.7 - - - -
613B PHE 3.1 1.4 - - - -
614B LEU* 1.3 76.7 - - - +
616B SER* 1.3 62.9 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il