Contacts of the helix formed by residues 572 - 615 (chain D) in PDB entry 5YWB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 572 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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321D PHE* 5.2 0.7 - - - -
325D ASP* 4.2 11.5 + - - -
570D ASP 3.0 8.9 + - - -
571D LEU* 1.3 75.3 - - - +
573D PRO* 1.3 77.3 - - - +
574D SER* 2.9 9.5 + - - -
575D VAL* 2.9 31.0 + - - +
576D ALA* 3.5 5.5 + - - +
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Residues in contact with PRO 573 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324D VAL* 4.3 9.6 - - + -
571D LEU 3.5 4.0 - - - +
572D SER* 1.3 86.6 - - - +
574D SER* 1.3 61.8 + - - +
576D ALA* 3.1 10.0 + - + +
577D PHE* 3.0 47.3 + - + -
1035D ALA 5.8 0.2 - - - +
1038D THR* 3.9 13.5 - - - +
1039D ASP* 3.8 34.8 - - + +
1278D ALA* 5.7 5.8 - - + +
1279D GLY* 5.9 1.3 - - - -
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Residues in contact with SER 574 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320D ILE* 5.7 0.2 - - - +
321D PHE* 3.5 31.1 - - - +
324D VAL* 3.2 29.1 + - - +
325D ASP* 2.5 32.4 + - - -
572D SER* 2.9 5.0 + - - -
573D PRO* 1.3 78.0 - - - +
575D VAL* 1.3 62.3 + - - +
577D PHE* 4.0 1.1 - - - +
578D ALA* 2.9 27.7 + - - +
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Residues in contact with VAL 575 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321D PHE* 3.8 21.3 - - + -
455D ILE* 3.4 38.2 - - + +
456D LEU* 5.3 1.1 - - - -
559D PHE* 5.9 2.5 - - + -
562D HIS* 6.2 2.7 - - + +
571D LEU* 4.8 12.1 - - + -
572D SER* 2.9 28.1 + - - +
574D SER* 1.3 75.3 - - - +
576D ALA* 1.3 63.6 + - - +
578D ALA* 3.9 0.7 - - - +
579D SER* 2.9 26.2 + - - -
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Residues in contact with ALA 576 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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559D PHE* 3.4 34.0 - - + -
571D LEU* 4.5 4.2 - - + +
572D SER 3.5 3.3 + - - +
573D PRO* 3.1 17.2 + - + +
575D VAL* 1.3 79.5 - - - +
577D PHE* 1.3 60.5 + - + +
579D SER* 2.3 20.8 + - - -
580D LEU* 3.0 13.2 + - - +
1034D LEU* 4.5 9.0 - - + -
1038D THR* 4.4 16.8 - - + -
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Residues in contact with PHE 577 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320D ILE* 4.9 8.5 - - + -
324D VAL* 5.3 2.7 - - + -
573D PRO* 3.0 45.4 + - + +
574D SER* 4.2 3.6 - - - +
576D ALA* 1.3 77.4 - - + +
578D ALA* 1.3 62.3 + - - +
580D LEU* 3.2 14.9 + - + +
581D SER* 2.9 32.9 + - - -
1031D ASP* 5.0 1.8 - - + -
1034D LEU* 5.1 7.0 - - + -
1035D ALA* 3.4 35.0 - - + -
1038D THR* 4.4 2.9 - - - -
1279D GLY* 4.0 6.3 - - - -
1282D GLY* 3.4 21.1 - - - -
1283D LEU* 3.3 34.5 - - + -
1286D THR* 3.3 27.3 + - + +
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Residues in contact with ALA 578 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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317D PRO* 4.1 13.4 - - + +
320D ILE* 5.0 3.7 - - - +
321D PHE* 3.9 26.0 - - + -
455D ILE* 4.4 17.0 - - + -
574D SER 2.9 19.2 + - - +
575D VAL* 3.9 3.1 - - - +
577D PHE* 1.3 76.5 - - - +
579D SER* 1.3 57.2 + - - +
581D SER* 3.3 7.4 + - - -
582D LEU* 3.0 35.5 + - - +
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Residues in contact with SER 579 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452D LEU* 6.5 0.4 - - - -
455D ILE* 4.8 9.8 - - - +
559D PHE* 3.0 24.5 - - - -
575D VAL* 2.9 15.5 + - - -
576D ALA 2.3 26.3 + - - -
578D ALA* 1.3 78.3 - - - +
580D LEU* 1.3 54.9 + - - +
582D LEU* 3.5 7.0 + - - +
583D PHE* 2.9 32.3 + - - +
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Residues in contact with LEU 580 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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555D VAL* 5.2 12.8 - - + -
559D PHE* 5.3 4.9 - - + -
576D ALA 3.0 8.4 + - - +
577D PHE* 3.2 19.0 + - + +
579D SER* 1.3 81.5 + - - +
581D SER* 1.3 57.8 + - - +
583D PHE* 3.4 20.2 + - + +
584D HIS* 2.9 32.2 + - + +
1027D LEU* 6.4 1.6 - - + -
1031D ASP* 3.7 31.6 - - + +
1283D LEU* 6.2 0.2 - - + -
1286D THR* 4.1 20.9 - - + -
1287D TYR* 5.9 1.6 - - + -
1290D MET* 5.2 5.2 - - + -
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Residues in contact with SER 581 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317D PRO* 3.7 24.5 - - - -
320D ILE* 4.3 10.6 - - - +
577D PHE 2.9 17.6 + - - -
578D ALA* 3.6 5.6 - - - -
580D LEU* 1.3 74.1 - - - +
582D LEU* 1.3 65.1 + - - +
584D HIS* 3.1 7.6 + - - +
585D ILE* 3.0 29.3 + - - +
1286D THR* 3.7 22.4 + - - +
1289D LEU* 4.9 5.3 - - - +
1290D MET* 5.6 1.3 - - - -
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Residues in contact with LEU 582 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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314D PHE* 4.2 26.0 - - + +
317D PRO* 4.4 13.0 - - + -
448D GLY* 4.7 10.0 - - - +
451D LEU* 3.8 40.2 - - + -
452D LEU* 4.2 19.3 - - + +
455D ILE* 3.7 30.1 - - + -
578D ALA 3.0 16.7 + - - +
579D SER* 4.0 5.4 - - - +
581D SER* 1.3 76.7 - - - +
583D PHE* 1.3 56.8 - - - +
585D ILE* 3.3 7.0 + - + +
586D LEU* 2.9 27.6 + - - +
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Residues in contact with PHE 583 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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466D VAL* 6.2 0.2 - - + -
551D PRO* 3.1 54.1 - - + -
552D ILE* 5.2 2.5 - - + -
554D ALA* 4.6 7.9 - - + -
555D VAL* 3.4 22.2 - - + -
579D SER 2.9 19.2 + - - +
580D LEU* 3.5 18.4 - - + +
581D SER 3.1 0.2 - - - -
582D LEU* 1.3 78.4 - - - +
584D HIS* 1.3 62.0 + - - +
586D LEU* 3.1 16.1 + - + +
587D VAL* 2.9 46.8 + - + +
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Residues in contact with HIS 584 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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580D LEU* 2.9 19.8 + - + +
581D SER* 3.1 5.4 + - - +
583D PHE* 1.3 80.9 - - + +
585D ILE* 1.3 70.6 + - + +
587D VAL* 3.0 21.4 + - + +
588D THR* 3.1 20.9 + - - -
1027D LEU* 6.2 2.7 - - + -
1149D LEU* 4.7 12.1 - - + -
1290D MET* 3.5 39.4 - - + +
1294D TYR* 2.8 46.5 + + - -
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Residues in contact with ILE 585 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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313D GLY* 4.8 10.8 - - - +
314D PHE* 3.4 37.5 - - + -
317D PRO* 4.7 12.6 - - + -
444D GLN* 2.9 24.3 + - - +
581D SER* 3.0 19.0 + - - +
582D LEU* 3.5 9.9 - - + +
584D HIS* 1.3 83.8 - - + +
586D LEU* 1.3 57.8 + - - +
588D THR* 3.7 5.0 + - - +
589D PRO* 3.1 13.7 - - - +
1289D LEU* 6.1 5.6 - - + +
1290D MET* 6.5 1.1 - - - -
1293D ASN* 5.1 12.6 - - - +
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Residues in contact with LEU 586 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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444D GLN* 4.6 4.0 - - + +
445D ILE* 3.5 42.4 - - + +
448D GLY* 6.0 7.2 - - - -
449D VAL 6.3 0.9 - - - +
452D LEU* 5.3 10.1 - - + -
467D ILE* 3.7 38.1 - - + -
582D LEU 2.9 14.2 + - - +
583D PHE* 3.1 17.5 + - + +
585D ILE* 1.3 75.5 - - - +
587D VAL* 1.3 66.2 + - + +
589D PRO* 3.1 12.2 - - + +
590D LEU* 3.9 19.5 - - + +
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Residues in contact with VAL 587 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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547D ASN* 4.5 13.9 - - + +
551D PRO* 4.0 14.1 - - + -
583D PHE* 2.9 51.8 + - + +
584D HIS* 3.0 14.3 + - + +
586D LEU* 1.3 78.1 - - + +
588D THR* 1.3 69.9 + - - +
590D LEU* 3.1 24.2 + - + +
591D PHE* 3.6 9.7 + - + +
1145D ARG* 5.8 5.6 - - - +
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Residues in contact with THR 588 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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584D HIS* 3.1 16.9 + - - -
585D ILE* 4.2 4.9 - - - +
587D VAL* 1.3 79.4 - - - +
589D PRO* 1.3 71.4 - - + +
590D LEU 3.3 0.2 + - - -
591D PHE* 3.5 7.6 + - - +
592D LEU* 3.4 20.0 + - + +
1145D ARG* 4.9 9.6 + - - +
1294D TYR* 2.9 28.2 + - + +
1297D TRP* 3.9 33.9 - - + -
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Residues in contact with PRO 589 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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306D ARG* 5.8 1.6 - - - +
441D MET* 4.4 25.3 - - + +
444D GLN* 3.4 33.0 - - + +
445D ILE* 5.5 4.5 - - + -
585D ILE 3.1 24.7 - - - +
586D LEU 3.1 10.8 - - - +
588D THR* 1.3 83.5 - - + +
590D LEU* 1.3 62.9 + - + +
592D LEU* 3.0 14.6 + - + +
593D LEU* 3.0 24.6 + - - +
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Residues in contact with LEU 590 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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441D MET* 5.7 3.8 - - + -
445D ILE* 5.8 5.6 - - + -
467D ILE* 6.2 0.9 - - + -
470D LEU* 3.7 37.2 - - + -
474D GLN* 5.9 3.8 - - + -
547D ASN* 3.2 28.8 + - + +
551D PRO* 5.5 4.9 - - + -
586D LEU* 3.9 28.5 - - + +
587D VAL* 3.1 17.1 + - + +
589D PRO* 1.3 77.8 - - + +
591D PHE* 1.3 63.8 + - - +
592D LEU 3.3 0.3 + - - -
593D LEU* 3.4 37.0 + - + +
594D SER* 3.8 2.4 + - - -
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Residues in contact with PHE 591 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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544D ILE* 3.5 44.6 - - + -
547D ASN* 3.7 15.7 - - + +
548D THR* 6.1 0.4 - - - -
587D VAL* 3.6 7.2 + - + +
588D THR 3.5 8.9 + - - +
589D PRO 3.4 0.4 - - - -
590D LEU* 1.3 78.1 - - - +
592D LEU* 1.3 64.1 + - + +
594D SER* 2.7 24.6 + - - -
595D SER* 4.0 9.8 + - - -
1138D SER* 6.3 2.2 - - - -
1141D GLU* 4.4 21.5 - - + -
1142D CYS* 3.4 33.9 - - - -
1145D ARG* 3.6 37.2 - - - +
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Residues in contact with LEU 592 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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437D ASN* 3.8 26.9 - - - +
588D THR* 3.4 16.5 + - + +
589D PRO* 3.0 14.4 + - + +
591D PHE* 1.3 85.7 - - + +
593D LEU* 1.3 65.8 + - - +
595D SER* 3.1 13.3 + - - +
596D VAL* 3.0 25.3 + - + +
1142D CYS* 5.7 3.4 - - - -
1145D ARG* 5.7 0.7 - - - +
1297D TRP* 3.3 45.3 - - + -
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Residues in contact with LEU 593 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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441D MET* 4.2 26.0 - - + -
474D GLN* 5.2 20.9 - - + +
478D ALA* 5.6 7.2 - - + -
547D ASN* 5.8 0.2 - - - +
589D PRO 3.0 9.1 + - - +
590D LEU* 3.4 40.4 - - + +
592D LEU* 1.3 76.3 - - - +
594D SER* 1.3 70.0 + - - +
596D VAL* 3.1 21.6 + - + +
597D VAL* 3.1 28.2 + - + +
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Residues in contact with SER 594 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474D GLN* 6.0 0.2 - - - -
481D LEU* 4.5 16.6 - - - +
536D PHE* 5.6 2.4 - - - -
540D THR* 5.6 6.5 - - - +
543D SER* 3.7 24.9 - - - -
544D ILE* 4.2 13.1 - - - +
547D ASN* 5.1 0.4 - - - -
590D LEU 4.6 3.8 - - - -
591D PHE* 2.7 23.8 + - - -
593D LEU* 1.3 89.1 - - - +
595D SER* 1.3 62.5 + - - +
597D VAL* 3.5 16.4 + - - +
598D ARG* 4.0 4.2 + - - +
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Residues in contact with SER 595 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
434D LEU* 5.0 4.5 - - - +
536D PHE* 6.5 0.2 - - - -
591D PHE* 4.3 11.8 + - - -
592D LEU* 3.1 13.9 + - - +
594D SER* 1.3 81.0 + - - +
596D VAL* 1.3 65.6 + - - +
598D ARG* 3.2 33.5 + - - +
599D SER* 3.7 5.0 + - - -
1138D SER* 4.1 21.7 - - - -
1142D CYS* 5.5 1.9 - - - -
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Residues in contact with VAL 596 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431D PHE* 6.3 0.4 - - + -
434D LEU* 4.2 36.6 - - + +
437D ASN* 5.2 5.6 - - + +
438D LEU* 3.7 28.9 - - + -
592D LEU* 3.0 23.7 + - + +
593D LEU* 3.1 17.7 + - + +
595D SER* 1.3 78.1 - - - +
597D VAL* 1.3 59.0 + - + +
599D SER* 3.0 6.1 + - - -
600D THR* 2.8 41.0 + - - +
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Residues in contact with VAL 597 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478D ALA* 4.5 21.5 - - + +
481D LEU* 3.6 22.2 - - + -
482D SER* 3.6 24.2 - - - +
485D GLN* 4.8 0.7 - - - +
593D LEU* 3.1 21.4 + - + +
594D SER* 3.8 11.4 - - - +
595D SER 3.2 0.4 - - - -
596D VAL* 1.3 77.4 - - + +
598D ARG* 1.3 62.2 + - - +
600D THR* 4.0 9.4 - - + +
601D VAL* 3.0 28.3 + - + +
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Residues in contact with ARG 598 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427D GLN* 5.9 0.4 + - - -
481D LEU* 5.0 1.0 - - - +
485D GLN* 2.9 44.5 + - - +
536D PHE* 4.1 26.0 - - + -
594D SER 4.0 1.6 + - - +
595D SER* 3.2 25.5 + - - +
596D VAL 3.1 0.2 - - - -
597D VAL* 1.3 79.3 - - - +
599D SER* 1.3 71.4 + - - +
602D LYS* 3.4 20.0 + - + +
1134D GLN* 3.2 51.8 + - - +
1135D HIS* 3.6 37.6 + - - -
1138D SER* 4.3 13.1 + - - -
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Residues in contact with SER 599 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427D GLN* 4.9 8.3 + - - +
430D TRP* 4.2 13.6 - - - +
431D PHE* 4.2 19.7 - - - +
434D LEU* 4.0 24.0 - - - +
595D SER 3.7 2.3 + - - -
596D VAL* 3.0 8.3 + - - -
598D ARG* 1.3 91.7 + - - +
600D THR* 1.3 58.7 - - - +
602D LYS* 3.6 5.6 - - - +
603D ALA* 2.9 30.3 + - - +
1135D HIS* 5.9 0.3 + - - -
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Residues in contact with THR 600 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288D TRP* 5.3 0.9 - - - -
431D PHE* 4.2 25.6 - - + -
438D LEU* 4.8 2.9 - - + +
596D VAL* 2.8 33.8 + - - +
597D VAL* 3.1 11.5 + - + -
599D SER* 1.3 75.1 - - - +
601D VAL* 1.3 67.6 + - - +
603D ALA* 3.2 4.5 + - - +
604D LEU* 3.0 22.4 + - + +
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Residues in contact with VAL 601 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
482D SER* 4.6 23.3 - - - +
485D GLN* 3.2 35.7 - - + +
486D ARG* 3.4 38.8 - - + +
489D LEU* 5.6 1.1 - - + -
597D VAL* 3.0 21.6 + - + +
600D THR* 1.3 78.2 - - - +
602D LYS* 1.3 60.1 + - + +
604D LEU* 3.4 7.6 + - - +
605D VAL* 2.9 32.4 + - + +
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Residues in contact with LYS 602 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423D ILE* 6.3 1.6 - - - -
427D GLN* 3.2 47.2 - - + +
485D GLN* 4.0 7.2 - - - +
489D LEU* 3.7 40.2 - - + +
598D ARG* 3.4 25.3 + - + +
599D SER* 3.4 4.9 + - - +
600D THR 3.1 0.6 - - - -
601D VAL* 1.3 81.0 - - + +
603D ALA* 1.3 60.8 + - - +
605D VAL* 3.4 1.6 + - - +
606D SER* 2.9 34.6 + - - -
1130D ASN* 4.9 12.5 - - - +
1134D GLN* 2.4 36.8 + - - +
1135D HIS* 5.3 4.6 - - - -
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Residues in contact with ALA 603 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288D TRP* 4.1 8.1 - - + -
427D GLN* 4.6 6.4 - - - +
428D LEU* 4.5 11.8 - - + +
431D PHE* 3.5 36.8 - - + -
599D SER 2.9 16.9 + - - +
600D THR 3.2 4.9 + - - +
602D LYS* 1.3 74.5 - - - +
604D LEU* 1.3 64.2 + - - +
606D SER* 3.3 6.1 + - - -
607D VAL* 3.0 28.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 604 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288D TRP* 3.8 25.0 - - + -
486D ARG* 3.3 29.4 - - - +
600D THR* 3.0 14.2 + - + +
601D VAL* 3.5 9.9 - - - +
603D ALA* 1.3 76.4 - - - +
605D VAL* 1.3 57.3 + - - +
607D VAL* 3.3 1.4 + - + +
608D GLN* 3.0 55.2 + - + +
----------------------------------------------------------
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Residues in contact with VAL 605 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486D ARG* 3.8 36.6 - - + +
489D LEU* 3.7 32.1 - - + -
601D VAL* 2.9 25.7 + - + +
602D LYS 3.8 3.6 - - - +
604D LEU* 1.3 76.0 - - + +
606D SER* 1.3 58.0 + - - +
608D GLN* 3.3 11.6 + - - +
609D LYS* 2.9 39.4 + - + +
----------------------------------------------------------
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Residues in contact with SER 606 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423D ILE* 4.2 4.9 - - - +
424D ASP* 2.7 35.5 + - - +
427D GLN* 3.6 22.2 - - - +
428D LEU* 4.8 9.4 - - - -
489D LEU* 6.0 0.9 - - - +
602D LYS 2.9 19.1 + - - -
603D ALA* 3.7 7.4 - - - -
605D VAL* 1.3 77.2 - - - +
607D VAL* 1.3 58.6 + - - +
609D LYS* 3.4 7.8 + - - +
610D LEU* 2.9 28.1 + - - +
----------------------------------------------------------
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Residues in contact with VAL 607 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284D ALA* 4.2 9.4 - - + +
287D ILE* 3.5 28.5 - - + -
288D TRP* 3.3 40.8 - - + -
291D LEU* 4.8 5.2 - - + -
428D LEU* 3.9 28.7 - - + -
603D ALA 3.0 14.5 + - - +
604D LEU* 6.1 0.2 - - + -
606D SER* 1.3 73.7 - - - +
608D GLN* 1.3 62.5 + - + +
610D LEU* 3.2 6.7 + - + +
611D SER* 2.8 32.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 608 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284D ALA* 4.9 12.7 - - + +
486D ARG* 5.1 10.3 + - - +
604D LEU* 3.0 44.3 + - + +
605D VAL* 3.6 10.8 - - - +
607D VAL* 1.3 79.1 - - + +
609D LYS* 1.3 56.5 + - - +
611D SER* 3.3 4.9 + - - -
612D GLU* 3.0 39.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 609 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
416D GLN* 4.2 26.4 - - + +
419D ASN* 5.6 1.4 - - - +
420D LEU* 3.8 28.3 - - + +
423D ILE* 3.7 28.5 - - - +
424D ASP* 4.0 8.1 - - - +
489D LEU* 6.4 0.2 - - - +
493D ASN* 4.5 15.6 + - - +
605D VAL* 2.9 27.0 + - + +
606D SER* 3.6 4.3 - - - +
608D GLN* 1.3 74.7 - - - +
610D LEU* 1.3 58.0 + - - +
612D GLU* 3.3 10.7 + - - +
613D PHE* 2.9 27.8 + - + +
----------------------------------------------------------
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Residues in contact with LEU 610 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287D ILE* 5.2 14.1 - - + -
291D LEU* 6.4 0.9 - - + -
391D ILE* 4.5 30.3 - - + -
395D ILE* 3.5 29.8 - - + -
398D LYS* 6.1 0.2 - - - -
420D LEU* 4.2 22.0 - - + -
424D ASP* 5.1 5.4 - - + +
428D LEU* 4.7 13.5 - - + -
606D SER 2.9 17.4 + - - +
607D VAL* 3.6 7.0 - - + +
609D LYS* 1.3 75.8 - - - +
611D SER* 1.3 58.7 - - - +
613D PHE* 3.3 5.7 + - + -
614D LEU* 2.9 30.7 + - + +
----------------------------------------------------------
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Residues in contact with SER 611 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283D GLY 4.6 3.1 - - - -
284D ALA* 3.3 40.0 + - - -
287D ILE* 3.4 22.6 - - - +
607D VAL 2.8 18.8 + - - -
608D GLN 3.8 2.0 - - - -
609D LYS 3.2 0.2 - - - -
610D LEU* 1.3 75.9 - - - +
612D GLU* 1.3 65.6 + - - +
614D LEU* 3.3 7.9 + - - +
615D SER* 3.1 23.9 + - - -
----------------------------------------------------------
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Residues in contact with GLU 612 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
608D GLN* 3.0 23.7 + - - +
609D LYS* 3.8 7.8 - - - +
611D SER* 1.3 76.6 - - - +
613D PHE* 1.3 60.9 + - - +
615D SER* 3.4 20.0 + - - -
616D SER* 3.9 2.6 + - - -
----------------------------------------------------------
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Residues in contact with PHE 613 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395D ILE* 4.5 7.0 - - + -
398D LYS* 3.2 39.7 - - - -
399D ILE* 4.0 16.6 - - + -
402D LEU* 4.1 13.9 - - + -
411D GLU 5.0 9.0 - - - -
412D MET* 5.0 4.3 - - + -
417D ILE* 3.7 41.1 - - + -
420D LEU* 3.8 32.1 - - + -
609D LYS* 2.9 17.5 + - + +
610D LEU* 3.6 14.1 - - + +
611D SER 3.2 0.2 - - - -
612D GLU* 1.3 74.9 - - - +
614D LEU* 1.3 64.3 + - - +
615D SER 3.1 0.7 + - - -
616D SER* 3.2 23.6 + - - -
----------------------------------------------------------
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Residues in contact with LEU 614 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270D PHE* 4.0 27.4 - - + -
283D GLY 6.3 0.7 - - - +
287D ILE* 5.2 8.5 - - + -
394D LYS* 4.4 29.4 - - + +
395D ILE* 6.3 3.4 - - + -
398D LYS* 3.4 33.8 - - + +
610D LEU* 2.9 20.0 + - + +
611D SER* 3.3 8.0 + - - +
613D PHE* 1.3 76.5 - - - +
615D SER* 1.3 57.9 + - - +
616D SER* 3.2 8.7 + - - +
----------------------------------------------------------
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Residues in contact with SER 615 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
611D SER 3.1 16.4 + - - -
612D GLU* 3.8 11.9 - - - -
613D PHE 3.1 1.2 - - - -
614D LEU* 1.3 76.7 - - - +
616D SER* 1.3 64.6 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il