Contacts of the helix formed by residues 50 - 92 (chain C) in PDB entry 5ZR1
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 50 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43C LYS* 3.7 1.6 - - - +
48C LYS 3.8 2.2 + - - -
49C GLU* 1.3 78.8 - - - +
51C GLU* 1.3 64.6 + - - +
52C VAL* 3.4 18.2 - - - +
53C ASN* 2.6 41.8 + - - +
54C VAL* 3.4 13.3 + - - +
345C PHE* 3.5 9.8 - - - -
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Residues in contact with GLU 51 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36C ASP* 3.5 18.7 - - - +
37C LYS* 3.3 35.4 - - + +
43C LYS* 3.3 19.0 - - - +
50C SER* 1.3 74.7 - - - +
52C VAL* 1.3 62.1 + - - +
54C VAL* 3.1 7.2 + - + +
55C GLU* 3.1 39.8 + - + +
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Residues in contact with VAL 52 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50C SER* 3.4 17.2 - - - +
51C GLU* 1.3 78.0 - - - +
53C ASN* 1.3 61.0 + - - +
55C GLU* 4.1 6.7 - - + +
56C LYS* 3.2 27.8 + - + +
345C PHE* 4.3 18.8 - - + -
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Residues in contact with ASN 53 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49C GLU* 3.3 20.1 - - - +
50C SER* 2.6 35.8 + - - +
51C GLU 3.2 0.4 - - - -
52C VAL* 1.3 79.5 - - - +
54C VAL* 1.3 58.9 + - - +
56C LYS* 4.4 4.2 - - - +
57C ARG* 3.0 30.8 + - - +
336C VAL* 3.5 18.4 - - + +
342C ASN* 5.8 2.3 + - - -
345C PHE* 3.2 35.5 - - - -
350C TYR* 3.2 19.2 + - - +
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Residues in contact with VAL 54 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37C LYS* 5.4 7.2 - - - +
39C ILE* 3.7 19.5 - - + -
41C PHE* 3.8 31.8 - - + +
42C VAL 4.1 13.7 - - - +
43C LYS* 4.2 18.8 - - + +
49C GLU* 4.2 13.2 - - - -
50C SER 3.4 15.3 - - - +
51C GLU* 3.1 10.2 + - + +
53C ASN* 1.3 78.1 - - - +
55C GLU* 1.3 57.6 + - + +
57C ARG* 3.5 11.5 + - - +
58C TRP* 3.1 25.5 + - - +
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Residues in contact with GLU 55 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36C ASP* 3.6 28.4 - - - +
37C LYS* 5.1 1.8 - - + +
39C ILE* 3.9 20.4 - - + +
51C GLU* 3.1 36.2 + - + +
52C VAL* 4.5 4.6 - - + +
54C VAL* 1.3 74.0 - - + +
56C LYS* 1.3 63.8 + - - +
58C TRP* 3.5 10.8 + - + +
59C GLU* 3.3 26.4 + - - +
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Residues in contact with LYS 56 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52C VAL* 3.2 22.1 + - + +
53C ASN* 3.8 6.5 - - - +
54C VAL 3.3 0.2 - - - -
55C GLU* 1.3 77.1 - - - +
57C ARG* 1.3 57.3 + - - +
59C GLU* 3.3 26.5 + - - +
60C LEU* 2.9 39.6 + - + +
336C VAL* 4.4 9.9 - - + -
339C ASP* 3.5 16.1 + - - -
341C VAL* 4.6 8.7 - - - +
342C ASN* 3.3 38.0 + - - +
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Residues in contact with ARG 57 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41C PHE* 3.4 28.0 - - - +
42C VAL 2.9 26.5 + - - +
44C LEU* 3.3 21.8 - - - +
49C GLU* 2.9 37.8 + - - -
53C ASN 3.0 17.0 + - - +
54C VAL* 3.8 10.9 - - - +
56C LYS* 1.3 75.8 - - - +
58C TRP* 1.3 60.2 + - - +
60C LEU* 4.5 5.4 - - - -
61C TYR* 3.3 23.6 + - - +
329C PHE* 3.1 29.4 + - + +
330C PHE 4.7 3.6 + - - -
332C ASN 3.5 16.8 + - - -
333C ALA* 4.1 1.7 - - - +
335C SER* 3.7 18.8 - - - -
336C VAL* 3.7 14.1 - - + +
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Residues in contact with TRP 58 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306B PHE* 3.7 22.2 - + - -
309B THR* 4.8 9.4 - - + -
39C ILE* 3.7 34.7 - - + +
40C PRO* 3.6 38.6 - - + -
41C PHE* 3.6 33.2 - + + -
54C VAL 3.1 15.7 + - - +
55C GLU* 3.6 9.0 - - + +
56C LYS 3.1 0.2 - - - -
57C ARG* 1.3 78.2 - - - +
59C GLU* 1.3 62.9 + - + +
61C TYR* 3.3 4.0 + - - +
62C HIS* 3.1 63.2 + + - -
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Residues in contact with GLU 59 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55C GLU 3.3 11.8 + - - +
56C LYS* 3.4 37.9 + - + +
58C TRP* 1.3 83.6 - - + +
60C LEU* 1.3 63.2 + - + +
61C TYR 3.2 0.2 - - - -
62C HIS* 3.8 6.9 - - - +
63C GLN* 3.1 29.7 + - - +
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Residues in contact with LEU 60 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56C LYS* 2.9 28.1 + - + +
57C ARG* 4.5 2.2 - - - +
59C GLU* 1.3 76.4 - - + +
61C TYR* 1.3 64.5 + - - +
63C GLN* 3.3 26.9 - - + +
64C LEU* 3.5 23.3 + - + +
291C LYS* 6.2 1.6 - - + -
329C PHE* 3.5 19.1 - - + -
335C SER 3.4 26.7 - - - +
336C VAL* 4.9 3.1 - - - -
338C ILE* 3.7 22.0 - - + -
339C ASP* 4.4 24.0 - - + +
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Residues in contact with TYR 61 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306B PHE* 3.6 30.5 - + - -
310B GLN* 2.5 33.8 + - - -
41C PHE* 4.4 8.3 - + + -
57C ARG 3.3 21.5 + - - +
58C TRP* 3.4 3.8 - + - +
59C GLU 3.2 0.2 - - - -
60C LEU* 1.3 77.8 - - - +
62C HIS* 1.3 79.5 + + - +
64C LEU* 3.1 4.0 + - - +
65C HIS* 2.7 47.4 + + + +
325C LEU* 3.5 27.6 - - + -
326C MET* 3.2 15.5 - - - +
329C PHE* 3.5 36.6 - + + -
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Residues in contact with HIS 62 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310B GLN* 3.9 15.0 + - - -
58C TRP* 3.1 65.6 + + - +
59C GLU* 3.5 7.4 + - - +
60C LEU 3.5 0.2 - - - -
61C TYR* 1.3 98.4 - + - +
63C GLN* 1.3 57.2 + - - +
65C HIS* 4.2 9.9 - - - -
66C SER* 2.8 31.5 + - - -
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Residues in contact with GLN 63 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59C GLU 3.1 20.8 + - - +
60C LEU* 3.3 32.2 - - + +
61C TYR 3.2 0.2 - - - -
62C HIS* 1.3 77.9 - - - +
64C LEU* 1.3 60.1 + - + +
66C SER* 3.8 6.1 + - - -
67C HIS* 3.3 24.6 + - - +
339C ASP* 5.3 4.2 + - - +
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Residues in contact with LEU 64 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60C LEU* 3.5 15.9 + - + +
61C TYR 3.1 4.5 + - - +
63C GLN* 1.3 81.4 - - + +
65C HIS* 1.3 60.3 + - - +
67C HIS* 4.2 4.2 - - - +
68C PHE* 3.7 17.5 + - - +
287C THR* 4.4 16.5 - - - +
288C VAL* 4.0 16.8 - - + -
291C LYS* 3.7 30.5 - - + -
292C LEU* 4.9 3.6 - - + -
325C LEU* 3.7 31.2 - - + +
329C PHE* 3.8 13.5 - - + -
338C ILE* 3.8 17.3 - - + -
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Residues in contact with HIS 65 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310B GLN* 3.1 22.4 + - - +
448B ARG* 4.9 10.5 - - - -
61C TYR* 2.7 52.1 + + + +
62C HIS* 4.2 11.8 - - - +
64C LEU* 1.3 73.7 - - - +
66C SER* 1.3 67.9 + - - +
68C PHE* 3.3 5.2 + + - +
69C HIS* 3.1 66.0 + + + -
322C ASP* 4.4 14.5 + - + +
325C LEU* 4.6 10.5 - - + +
326C MET* 5.4 0.9 - - + +
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Residues in contact with SER 66 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62C HIS* 2.8 25.0 + - - -
63C GLN* 3.8 7.6 + - - -
65C HIS* 1.3 80.4 + - - +
67C HIS* 1.3 62.6 + - - +
69C HIS* 3.8 4.4 - - - +
70C ASP* 2.9 43.7 + - - +
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Residues in contact with HIS 67 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63C GLN 3.3 18.9 + - - +
64C LEU* 4.5 4.7 - - - +
65C HIS 3.3 0.4 - - - -
66C SER* 1.3 81.5 + - - +
68C PHE* 1.3 60.5 + - - +
70C ASP* 4.5 7.4 - - - +
71C GLN* 3.9 42.5 + - + +
286C ASP* 5.0 5.5 + - - +
287C THR* 3.5 36.1 + - + +
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Residues in contact with PHE 68 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64C LEU 3.7 12.7 + - - +
65C HIS* 3.3 9.3 + + - +
66C SER 3.2 0.6 - - - -
67C HIS* 1.3 80.9 - - - +
69C HIS* 1.3 66.6 + + - +
71C GLN* 3.4 4.7 + - - +
72C VAL* 3.2 46.4 + - + +
280C ILE* 3.8 10.5 - - + -
283C SER* 4.0 5.8 - - - -
284C PHE* 3.6 51.1 - + + -
287C THR* 3.8 10.3 - - + +
318C THR* 4.1 16.6 - - + -
321C LEU* 4.1 22.2 - - + -
322C ASP* 3.3 27.6 - - - -
325C LEU* 5.4 5.2 - - + -
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Residues in contact with HIS 69 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65C HIS* 3.1 53.5 + + + +
66C SER* 4.3 5.2 - - - +
68C PHE* 1.3 81.5 - + - +
70C ASP* 1.3 65.5 + - - +
71C GLN 3.2 0.7 - - - -
72C VAL* 3.9 10.5 - - + +
73C ASP* 2.9 40.5 + - - +
318C THR* 3.8 15.3 - - + +
322C ASP* 2.9 40.7 + - - -
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Residues in contact with ASP 70 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66C SER* 2.9 31.6 + - - +
67C HIS* 4.5 8.2 - - - +
68C PHE 3.4 0.2 - - - -
69C HIS* 1.3 78.4 - - - +
71C GLN* 1.3 63.1 + - + +
73C ASP* 4.3 6.4 - - - +
74C HIS* 3.4 18.7 + - - +
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Residues in contact with GLN 71 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67C HIS* 3.9 37.1 + - + +
68C PHE 3.4 4.1 + - - +
69C HIS 3.2 0.2 - - - -
70C ASP* 1.3 79.8 - - + +
72C VAL* 1.3 58.9 + - - +
73C ASP 3.3 0.2 - - - -
74C HIS* 3.1 9.9 + - + +
75C ILE* 2.8 34.0 + - + +
283C SER* 2.6 49.0 + - - +
286C ASP* 4.6 12.4 + - - +
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Residues in contact with VAL 72 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68C PHE* 3.2 47.6 + - + +
69C HIS* 3.7 11.4 + - + -
70C ASP 3.5 0.2 - - - -
71C GLN* 1.3 73.2 - - - +
73C ASP* 1.3 61.6 + - - +
75C ILE* 3.1 7.0 + - - +
76C ILE* 2.9 48.5 + - + +
280C ILE* 3.8 21.5 - - + -
283C SER* 4.3 5.8 - - - +
318C THR* 4.2 22.2 - - + +
----------------------------------------------------------
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Residues in contact with ASP 73 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69C HIS* 2.9 30.1 + - - +
70C ASP* 4.3 7.1 - - - +
72C VAL* 1.3 76.4 - - - +
74C HIS* 1.3 60.7 + - - +
76C ILE* 4.3 12.3 - - - +
77C ASP* 3.1 34.8 + - - +
----------------------------------------------------------
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Residues in contact with HIS 74 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70C ASP 3.4 14.9 + - - +
71C GLN* 3.1 14.6 + - + +
73C ASP* 1.3 79.2 - - - +
75C ILE* 1.3 65.4 + - + +
77C ASP* 3.6 7.1 + - - +
78C ASN* 2.8 50.3 + - - +
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Residues in contact with ILE 75 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71C GLN* 2.8 19.4 + - + +
72C VAL* 3.1 10.1 + - - +
74C HIS* 1.3 79.0 - - + +
76C ILE* 1.3 61.3 + - + +
78C ASN* 2.8 24.7 + - - +
79C ILE* 3.0 25.0 + - + +
276C TYR* 4.6 4.9 - - + +
279C GLN* 3.4 58.3 - - + +
280C ILE* 3.8 27.8 - - + +
283C SER* 4.1 11.0 - - - -
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Residues in contact with ILE 76 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72C VAL* 2.9 37.7 + - + +
73C ASP* 4.3 12.1 - - - +
75C ILE* 1.3 78.4 - - + +
77C ASP* 1.3 64.0 + - - +
79C ILE* 3.2 36.7 + - + +
80C GLU* 3.5 11.5 + - + +
280C ILE* 5.3 6.5 - - + -
314C LEU* 5.8 7.2 - - + -
318C THR* 5.9 0.4 - - - +
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Residues in contact with ASP 77 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73C ASP* 3.1 22.3 + - - +
74C HIS* 3.9 8.2 - - - +
75C ILE 3.2 0.6 - - - -
76C ILE* 1.3 81.2 - - - +
78C ASN* 1.3 58.9 + - - +
80C GLU* 3.9 4.9 + - - +
81C ALA* 3.4 24.8 + - - +
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Residues in contact with ASN 78 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74C HIS* 2.8 44.1 + - - +
75C ILE* 2.8 12.8 + - - +
77C ASP* 1.3 79.4 + - - +
79C ILE* 1.3 58.7 + - - +
80C GLU 3.2 2.5 - - - -
81C ALA* 3.9 8.2 - - - +
82C ASP* 3.1 29.8 + - - +
276C TYR* 4.6 6.8 + - + -
279C GLN* 5.7 3.6 - - - +
----------------------------------------------------------
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Residues in contact with ILE 79 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75C ILE* 3.0 19.5 + - + +
76C ILE* 3.2 31.0 + - + +
78C ASN* 1.3 76.6 - - - +
80C GLU* 1.3 71.9 + - + +
82C ASP* 4.2 1.1 - - - +
83C LEU* 3.3 23.0 + - - +
270C SER* 5.5 6.3 - - - -
276C TYR* 3.5 49.4 + - + -
314C LEU* 4.7 16.4 - - + -
----------------------------------------------------------
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Residues in contact with GLU 80 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76C ILE* 3.5 15.1 + - + +
77C ASP* 3.9 4.2 + - - +
78C ASN 3.2 0.2 - - - -
79C ILE* 1.3 91.6 - - + +
81C ALA* 1.3 56.5 + - - +
82C ASP 3.2 1.6 - - - -
83C LEU* 4.2 4.8 - - - +
84C LYS* 2.7 54.7 + - - +
113C THR* 4.2 9.1 - - - +
114C THR* 3.2 40.3 + - - -
115C LYS 4.2 2.8 + - - -
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Residues in contact with ALA 81 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77C ASP 3.4 19.0 + - - +
78C ASN* 3.7 9.8 + - - +
80C GLU* 1.3 77.3 - - - +
82C ASP* 1.3 60.4 + - - +
84C LYS* 4.2 12.6 - - + +
85C ALA* 3.4 21.7 + - - +
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Residues in contact with ASP 82 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78C ASN 3.1 20.3 + - - +
79C ILE 4.4 0.9 - - - +
81C ALA* 1.3 78.1 - - - +
83C LEU* 1.3 58.1 + - - +
85C ALA* 3.3 4.3 + - - +
86C GLU* 2.8 42.1 + - - +
275C LYS* 4.5 8.0 + - - +
276C TYR* 3.1 24.4 + - + +
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Residues in contact with LEU 83 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79C ILE 3.3 19.3 + - - +
80C GLU* 3.1 9.4 + - - +
82C ASP* 1.3 78.5 - - - +
84C LYS* 1.3 64.4 + - - +
86C GLU* 4.3 17.3 - - + +
87C ILE* 3.1 36.5 + - + +
107C LEU* 5.4 2.2 - - + -
114C THR* 3.4 39.0 - - + +
266C LEU* 4.8 4.7 - - + -
268C VAL* 3.7 44.2 - - + -
272C LYS* 6.3 1.8 - - - -
----------------------------------------------------------
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Residues in contact with LYS 84 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80C GLU* 2.7 40.4 + - - +
81C ALA* 4.2 10.3 - - - +
83C LEU* 1.3 75.4 - - - +
85C ALA* 1.3 57.1 - - - +
87C ILE* 3.3 10.1 - - - +
88C SER* 3.3 26.7 + - - -
114C THR* 4.8 2.2 - - - +
115C LYS* 3.5 37.7 - - - +
116C ILE* 6.0 0.7 - - - +
117C GLU* 4.8 26.1 + - + +
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Residues in contact with ALA 85 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81C ALA 3.4 15.5 + - - +
82C ASP* 3.3 6.8 + - - +
83C LEU 3.2 0.2 - - - -
84C LYS* 1.3 80.3 - - - +
86C GLU* 1.3 59.5 + - - +
87C ILE 3.3 0.2 - - - -
88C SER* 3.3 5.0 + - - -
89C ASP* 3.1 40.0 + - - +
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Residues in contact with GLU 86 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82C ASP* 2.8 31.1 + - - +
83C LEU* 4.2 15.0 - - + +
85C ALA* 1.3 77.3 - - - +
87C ILE* 1.3 61.2 + - - +
89C ASP* 3.8 10.1 + - - +
90C LEU* 3.7 20.4 + - + +
266C LEU* 3.3 36.3 - - + +
267C ASP 5.0 1.6 - - - +
272C LYS* 4.9 17.4 + - - -
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Residues in contact with ILE 87 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83C LEU* 3.1 28.0 + - + +
84C LYS* 3.3 13.2 - - - +
86C GLU* 1.3 76.1 - - - +
88C SER* 1.3 61.3 + - - +
89C ASP 3.5 0.2 - - - -
90C LEU* 3.5 2.7 + - - -
91C LEU* 2.9 28.8 + - + +
105C ILE* 4.6 14.1 - - + +
107C LEU* 3.7 38.4 - - + -
114C THR* 6.0 0.4 - - + -
115C LYS 5.7 0.2 - - - +
116C ILE* 3.8 41.3 - - + -
237C ILE* 4.3 10.8 - - + -
266C LEU* 4.3 10.0 - - + +
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Residues in contact with SER 88 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84C LYS 3.3 19.1 + - - -
85C ALA* 3.3 6.3 + - - -
86C GLU 3.3 0.6 - - - -
87C ILE* 1.3 77.2 - - - +
89C ASP* 1.3 65.9 + - - +
90C LEU 3.2 1.1 - - - -
91C LEU* 3.8 8.3 - - - +
92C TYR* 3.2 31.2 + - - +
117C GLU 4.7 10.2 + - - -
119C LYS* 2.9 28.4 + - - -
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Residues in contact with ASP 89 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85C ALA* 3.1 22.7 + - - +
86C GLU* 4.1 10.1 - - - +
87C ILE 3.5 0.2 - - - -
88C SER* 1.3 77.8 - - - +
90C LEU* 1.3 57.9 + - + +
92C TYR* 3.3 18.0 - - - +
93C SER* 4.5 3.1 + - - -
94C GLU* 5.0 0.3 - - - +
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Residues in contact with LEU 90 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86C GLU* 3.7 13.0 + - + +
87C ILE* 3.5 4.0 + - - +
88C SER 3.2 0.2 - - - -
89C ASP* 1.3 78.4 - - + +
91C LEU* 1.3 57.9 + - - +
92C TYR 3.4 1.1 - - - -
94C GLU* 2.8 31.4 - - - +
103C ASN* 5.0 0.2 + - - -
105C ILE* 3.7 35.5 - - + +
264C HIS* 3.6 38.7 + - + +
265C LYS 5.3 2.2 - - - +
266C LEU* 4.3 31.6 - - + -
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Residues in contact with LEU 91 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87C ILE* 2.9 19.4 + - + +
88C SER* 3.7 3.1 + - - -
89C ASP 3.5 0.2 - - - -
90C LEU* 1.3 79.5 - - - +
92C TYR* 1.3 80.4 + - + +
94C GLU* 4.4 0.7 - - - -
103C ASN* 3.5 20.5 + - - +
105C ILE* 3.7 17.7 - - + -
116C ILE* 4.4 13.7 - - + -
117C GLU 5.5 0.9 - - - +
118C LEU* 3.7 29.2 - - + -
202C VAL* 4.5 8.3 - - + -
235C SER* 3.3 32.1 - - - +
237C ILE* 4.5 13.0 - - + -
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Residues in contact with TYR 92 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88C SER* 3.2 39.9 + - - +
89C ASP 3.3 13.0 - - - +
91C LEU* 1.3 103.5 - - + +
93C SER* 1.3 71.0 + - - +
94C GLU* 3.2 15.4 + - - +
117C GLU 4.9 1.3 - - - -
118C LEU* 3.3 21.0 - - + +
119C LYS* 2.8 55.4 + - + +
121C GLU* 6.0 2.5 - - + -
126C ASN* 4.7 12.9 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il