Contacts of the helix formed by residues 810 - 847 (chain A) in PDB entry 6A5T
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 810 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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803A ASN* 3.7 15.1 - - - +
809A LEU* 1.3 80.9 - - - +
811A PRO* 1.3 78.0 - - - +
812A GLN* 3.6 10.0 + - - -
813A GLU* 3.3 29.6 + - - +
814A PHE* 3.4 9.6 + - - +
725B ARG* 4.7 10.3 - - + +
726B ILE 3.2 31.9 - - - +
727B LYS* 4.6 11.7 - - + -
728B PRO* 5.8 2.0 - - + -
1047B PHE* 3.3 11.4 - - - -
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Residues in contact with PRO 811 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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810A THR* 1.3 88.0 - - - +
812A GLN* 1.3 61.4 + - - +
814A PHE* 2.6 27.0 + - - +
815A PHE* 3.0 10.6 + - - +
512B TRP* 4.2 16.1 - - + -
702B MET* 3.4 47.1 - - + -
725B ARG* 5.9 0.9 - - - -
727B LYS* 4.4 12.3 - - - -
745B PRO* 4.0 7.6 - - + -
1047B PHE* 3.4 28.3 - - + -
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Residues in contact with GLN 812 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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785A LEU* 3.8 29.2 - - + -
787A HIS* 3.7 21.0 - - + +
788A PHE* 3.9 25.4 - - + -
796A GLU 5.8 0.7 - - - +
810A THR* 3.6 12.3 + - - -
811A PRO* 1.3 76.3 - - - +
813A GLU* 1.3 65.4 + - + +
815A PHE* 3.1 6.7 + - - +
816A PHE* 3.0 33.2 + - + -
512B TRP* 5.2 2.5 - - + -
702B MET* 3.0 33.3 - - + +
727B LYS* 5.8 2.1 - - - +
728B PRO* 5.4 9.4 - - - +
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Residues in contact with GLU 813 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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796A GLU* 5.5 7.8 - - - +
800A PHE 2.8 12.5 - - - +
801A VAL* 3.5 20.4 - - + +
802A GLU* 2.7 39.5 + - - +
803A ASN* 3.3 27.1 + - - +
809A LEU* 3.7 14.4 - - + +
810A THR* 3.3 18.8 + - - +
811A PRO 3.1 0.8 - - - -
812A GLN* 1.3 78.9 - - + +
814A PHE* 1.3 64.3 + - - +
816A PHE* 3.3 10.6 + - + +
817A HIS* 2.9 26.3 + - - +
726B ILE 5.7 0.6 - - - +
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Residues in contact with PHE 814 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
809A LEU* 3.7 17.9 - - + +
810A THR 3.4 15.2 + - - +
811A PRO 2.6 15.9 + - - +
813A GLU* 1.3 73.3 - - - +
815A PHE* 1.3 64.3 + - + +
817A HIS* 3.3 4.5 + + + -
818A ALA* 2.9 31.9 + - + +
517B PRO* 4.5 7.2 - - + -
518B ALA* 5.4 1.3 - - + -
748B ILE* 3.9 25.1 - - + -
749B LEU* 4.2 17.9 - - + -
759B PRO* 4.9 5.2 - - + -
760B ASP* 4.5 18.6 - - + -
762B ASN 5.3 7.4 - - - -
764B SER* 5.5 4.0 - - - -
767B ASN* 3.4 31.2 - - - -
1047B PHE* 3.8 25.8 - + + -
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Residues in contact with PHE 815 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
785A LEU* 4.7 9.9 - - + -
811A PRO 3.0 6.4 + - - +
812A GLN* 3.7 7.0 - - - +
814A PHE* 1.3 80.6 - - - +
816A PHE* 1.3 69.9 + + + +
818A ALA* 3.0 7.4 + - - +
819A MET* 2.9 39.6 + - - +
507B LEU* 3.4 32.5 - - + -
509B ASN* 4.5 14.6 - - - -
511B HIS* 3.7 33.0 - - + -
512B TRP* 3.7 42.6 - + + -
517B PRO* 4.0 23.3 - - + -
748B ILE* 4.3 2.5 - - + -
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Residues in contact with PHE 816 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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769A GLN* 4.7 17.3 - - + +
776A ILE* 4.2 18.3 - - + +
784A SER* 3.1 36.1 - - - -
785A LEU* 3.8 20.4 - - + -
788A PHE* 4.7 1.6 - + - -
796A GLU 4.6 4.3 - - - -
797A SER 3.2 20.4 - - - -
799A GLY* 3.8 20.6 - - - -
801A VAL* 5.1 2.0 - - + -
812A GLN* 3.0 31.1 + - + +
813A GLU* 3.7 9.2 - - + +
815A PHE* 1.3 79.7 - + - +
817A HIS* 1.3 58.8 + - - +
819A MET* 2.8 34.3 + - - +
820A ALA* 3.0 11.8 + - - +
509B ASN* 4.6 7.0 - - - -
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Residues in contact with HIS 817 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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761A GLN* 6.2 0.9 - - - -
766A VAL* 4.7 7.0 - - + +
769A GLN* 3.9 28.6 + - - +
801A VAL* 4.8 5.4 - - + -
805A TYR* 3.1 28.5 + + - -
809A LEU* 4.2 14.4 - - + -
813A GLU 2.9 17.3 + - - +
814A PHE* 3.8 7.4 - + + +
816A PHE* 1.3 76.6 - - - +
818A ALA* 1.3 62.1 - - - +
820A ALA* 3.3 6.1 + - + +
821A GLY* 3.0 20.7 + - - -
762B ASN 4.1 9.6 - - - -
763B GLN* 3.9 7.8 - - + +
764B SER* 3.8 28.5 + - - -
765B PRO* 5.3 0.8 - - - +
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Residues in contact with ALA 818 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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814A PHE* 2.9 23.1 + - + +
815A PHE* 3.0 10.0 + - - +
817A HIS* 1.3 75.5 - - - +
819A MET* 1.3 66.2 + - - +
821A GLY* 3.3 1.2 + - - -
822A ARG* 2.9 24.3 + - - +
507B LEU* 5.1 2.7 - - + -
517B PRO* 3.9 33.3 - - + +
764B SER* 3.8 18.6 + - - -
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Residues in contact with MET 819 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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771A VAL* 4.4 27.5 - - + +
776A ILE* 5.0 8.7 - - + -
815A PHE* 2.9 22.4 + - + +
816A PHE* 2.8 24.1 + - - +
818A ALA* 1.3 77.3 - - - +
820A ALA* 1.3 62.8 + - - +
822A ARG* 3.0 9.8 + - - +
823A GLU* 3.0 20.6 + - - +
506B GLN* 6.0 2.5 - - + -
507B LEU* 3.3 42.5 + - + +
508B HIS* 4.9 1.3 - - - -
509B ASN* 2.8 39.0 - - - +
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Residues in contact with ALA 820 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
769A GLN* 3.3 32.5 - - + +
770A MET 4.5 15.2 - - - +
771A VAL* 4.7 4.2 - - + +
816A PHE 3.0 10.3 + - - +
817A HIS* 3.6 10.3 - - + +
819A MET* 1.3 76.9 - - - +
821A GLY* 1.3 64.6 + - - +
823A GLU* 3.0 11.1 + - - +
824A GLY* 3.0 17.0 + - - -
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Residues in contact with GLY 821 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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817A HIS* 3.0 13.8 + - - -
820A ALA* 1.3 76.8 - - - +
822A ARG* 1.3 62.4 + - - +
824A GLY* 3.0 3.9 + - - -
825A LEU* 2.9 28.0 + - - +
764B SER* 3.1 23.1 - - - -
765B PRO* 4.3 12.6 - - - +
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Residues in contact with ARG 822 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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818A ALA 2.9 14.9 + - - +
819A MET* 3.0 13.4 + - - +
821A GLY* 1.3 76.3 - - - +
823A GLU* 1.3 63.4 + - - +
825A LEU* 3.2 11.4 + - - +
826A ILE* 2.9 41.2 + - + +
505B ARG 3.7 17.1 + - - +
506B GLN* 4.5 0.7 - - - -
507B LEU* 3.4 46.0 - - + +
516B CYS 4.0 5.3 + - - -
517B PRO* 3.6 28.9 + - - +
519B GLU 4.6 5.3 + - - -
520B THR* 4.6 16.0 - - - +
526B CYS* 5.1 7.0 - - - -
527B GLY* 4.2 18.6 + - - -
530B LYS* 6.3 0.6 - - - +
764B SER* 4.3 0.2 + - - -
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Residues in contact with GLU 823 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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770A MET 2.7 28.4 - - - +
771A VAL* 3.1 12.9 - - + -
772A GLU* 2.9 34.6 + - + +
819A MET 3.0 11.5 + - - +
820A ALA* 3.0 8.6 + - - +
822A ARG* 1.3 75.3 - - - +
824A GLY* 1.3 65.4 + - - +
826A ILE* 3.4 10.9 + - + +
827A ASP* 2.9 32.6 + - + +
506B GLN* 4.4 17.0 - - + +
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Residues in contact with GLY 824 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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820A ALA 3.0 12.8 + - - -
821A GLY* 3.0 6.2 + - - -
823A GLU* 1.3 77.8 - - - +
825A LEU* 1.3 56.3 + - - +
827A ASP* 3.3 6.0 - - - +
828A THR* 2.9 33.4 + - - -
765B PRO* 6.4 0.4 - - - -
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Residues in contact with LEU 825 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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821A GLY 2.9 15.8 + - - +
822A ARG* 3.7 15.5 - - - +
824A GLY* 1.3 74.1 - - - +
826A ILE* 1.3 68.8 + - - +
828A THR* 3.0 11.5 + - + +
829A ALA* 2.9 25.8 + - - +
520B THR* 5.9 2.5 - - + -
521B PRO 5.8 0.2 - - - +
522B GLU* 5.4 7.6 - - + -
526B CYS* 4.3 17.0 - - - -
764B SER* 6.1 0.2 - - - +
765B PRO* 4.9 15.9 - - + -
768B THR* 3.7 37.0 - - + +
769B TYR* 4.6 22.4 - - + +
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Residues in contact with ILE 826 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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822A ARG* 2.9 25.1 + - + +
823A GLU* 3.8 5.2 - - + +
825A LEU* 1.3 75.5 - - - +
827A ASP* 1.3 64.6 + - - +
829A ALA* 3.2 2.4 + - - +
830A VAL* 3.0 31.2 + - + +
502B ALA* 4.2 20.9 - - + -
505B ARG* 3.3 62.6 - - + +
506B GLN* 3.6 23.3 - - + +
526B CYS* 4.3 17.0 - - - -
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Residues in contact with ASP 827 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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823A GLU* 2.9 24.7 + - + +
824A GLY* 3.3 8.3 - - - +
826A ILE* 1.3 78.4 - - - +
828A THR* 1.3 63.1 + - - +
829A ALA 3.2 0.2 + - - -
830A VAL* 4.9 1.8 - - - -
831A LYS* 3.0 66.9 + - - +
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Residues in contact with THR 828 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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824A GLY 2.9 18.2 + - - -
825A LEU* 3.0 13.0 + - + +
827A ASP* 1.3 78.5 + - - +
829A ALA* 1.3 60.1 + - - +
832A THR* 3.5 18.4 + - - +
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Residues in contact with ALA 829 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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825A LEU 2.9 15.6 + - - +
826A ILE* 4.0 3.4 - - - +
828A THR* 1.3 76.1 - - - +
830A VAL* 1.3 62.4 + - + +
832A THR* 3.5 14.3 - - - +
833A ALA* 5.1 1.6 + - - +
505B ARG* 6.2 0.7 - - - +
523B GLY* 3.5 38.5 - - - +
524B GLN* 5.5 2.4 + - - -
526B CYS* 4.7 6.7 - - + -
34T A 4.6 11.2 + - - +
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Residues in contact with VAL 830 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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826A ILE* 3.0 31.2 + - + +
827A ASP* 4.2 1.6 - - - +
829A ALA* 1.3 80.5 - - + +
831A LYS* 1.3 73.9 + - + +
832A THR 3.0 2.2 - - - -
833A ALA* 2.7 26.6 + - + +
834A GLU* 3.9 1.2 + - - +
500B LYS* 4.5 29.8 - - + +
502B ALA* 5.7 4.5 - - + -
505B ARG* 4.5 23.8 - - - +
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Residues in contact with LYS 831 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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827A ASP* 3.0 45.7 + - - +
830A VAL* 1.3 80.1 - - + +
832A THR* 1.3 64.1 + - - +
833A ALA 3.0 0.7 + - - -
834A GLU* 3.1 11.1 + - + +
835A THR* 3.0 26.3 + - + +
1081A MET 5.1 14.6 + - - +
1099A GLY* 5.8 1.6 - - - -
1100A VAL* 4.7 29.4 - - + +
1101A PRO* 5.1 12.2 - - - +
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Residues in contact with THR 832 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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827A ASP 4.5 0.2 + - - -
828A THR 3.5 23.3 + - - +
829A ALA* 3.5 20.4 - - - +
831A LYS* 1.3 78.6 - - - +
833A ALA* 1.3 63.1 + - - +
835A THR* 2.4 26.1 + - - -
836A GLY* 2.9 8.8 + - - -
34T A 2.9 43.2 + - + +
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Residues in contact with ALA 833 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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829A ALA 5.5 0.9 - - - +
830A VAL* 2.7 22.6 + - + +
832A THR* 1.3 74.0 - - + +
834A GLU* 1.3 63.5 + - - +
836A GLY 3.2 2.4 + - - -
837A TYR* 3.0 22.1 + - - +
500B LYS* 6.5 0.9 - - - -
33T C 4.9 5.2 - - + +
34T A 3.4 45.3 - - + +
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Residues in contact with GLU 834 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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830A VAL 3.9 0.8 + - - +
831A LYS* 3.1 11.4 + - + +
833A ALA* 1.3 79.8 - - - +
835A THR* 1.3 62.4 + - - +
837A TYR* 3.3 18.7 + - - +
838A ILE* 2.9 47.5 + - + +
841A ARG* 4.6 2.8 + - - -
1100A VAL* 3.7 27.6 - - + -
1104A LYS* 3.7 37.1 + - + +
1108A ASN* 5.2 0.3 + - - -
33T C 6.0 2.9 - - - +
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Residues in contact with THR 835 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
831A LYS* 3.0 15.8 + - + +
832A THR* 2.4 30.3 + - - -
834A GLU* 1.3 78.6 - - - +
836A GLY* 1.3 59.7 + - - +
838A ILE* 3.3 7.0 + - + +
839A GLN* 2.9 25.5 + - - +
1075A GLY 5.7 0.9 - - - -
1078A ALA* 3.9 25.6 - - + +
1079A THR* 4.2 27.3 + - + +
1100A VAL* 4.2 15.9 - - + -
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Residues in contact with GLY 836 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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451A LEU* 6.0 4.0 - - - -
832A THR 2.9 8.2 + - - -
833A ALA 3.2 3.3 + - - -
835A THR* 1.3 82.3 + - - +
837A TYR* 1.3 63.8 + - - +
839A GLN* 3.3 4.8 + - - +
840A ARG* 3.0 23.4 + - - +
1133B MET* 5.5 7.9 - - - +
34T A 4.5 18.4 - - - -
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Residues in contact with TYR 837 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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833A ALA 3.0 13.3 + - - +
834A GLU* 3.6 23.8 - - - +
836A GLY* 1.3 74.0 - - - +
838A ILE* 1.3 65.1 + - - +
840A ARG* 3.0 17.1 + - - +
841A ARG* 3.0 63.3 + - + +
1389A ARG 5.9 0.5 + - - -
1406A GLU* 3.1 27.4 + - - -
32T A 4.1 10.1 - - + +
33T C 3.4 50.9 - - - -
34T A 4.8 6.9 - - - +
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Residues in contact with ILE 838 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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834A GLU* 2.9 47.9 + - + +
835A THR* 3.8 6.5 - - - +
837A TYR* 1.3 78.0 - - + +
839A GLN* 1.3 64.2 + - - +
841A ARG* 3.3 20.0 + - - +
842A LEU* 2.9 44.6 + - + +
1075A GLY* 5.6 3.8 - - - -
1078A ALA* 5.8 4.0 - - + -
1100A VAL* 4.6 12.8 - - + +
1103A LEU* 4.8 16.6 - - + +
1104A LYS* 4.7 17.3 - - - +
1107A LEU* 4.2 11.9 - - + -
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Residues in contact with GLN 839 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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450A SER 4.5 1.4 + - - -
451A LEU* 3.0 43.2 + - - +
835A THR 2.9 16.9 + - - +
836A GLY* 3.9 4.9 - - - +
838A ILE* 1.3 79.7 - - - +
840A ARG* 1.3 64.1 + - - +
842A LEU* 3.3 6.8 + - - +
843A VAL* 3.0 33.5 + - + +
1071A ALA 5.2 5.2 - - - +
1072A GLN* 3.6 36.0 - - - +
1075A GLY* 4.9 18.0 - - - -
1076A GLU* 5.4 0.2 - - - -
1079A THR* 5.3 1.6 + - - -
1133B MET* 4.1 16.4 - - + +
1136B ASP* 4.8 3.6 + - - +
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Residues in contact with ARG 840 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
338A ARG* 2.8 50.5 - - - +
836A GLY 3.0 13.8 + - - +
837A TYR* 3.0 17.9 + - + +
839A GLN* 1.3 78.7 - - - +
841A ARG* 1.3 66.6 + - + +
843A VAL* 3.3 3.8 + - - +
844A LYS* 3.0 37.2 + - + +
1404A SER 4.7 3.0 + - - -
1405A PHE* 3.5 25.2 + - + +
1406A GLU* 4.2 15.8 + - - +
1132B GLU* 3.6 26.6 + - - +
1133B MET* 5.7 4.2 - - + +
1136B ASP* 6.0 1.6 - - - -
33T C 4.0 18.2 + - - -
35T C 4.9 9.8 + - - -
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Residues in contact with ARG 841 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
834A GLU* 4.6 3.2 + - - -
837A TYR* 3.0 57.4 + - + +
838A ILE* 3.8 22.3 - - - +
840A ARG* 1.3 78.4 - - + +
842A LEU* 1.3 65.3 - - + +
844A LYS* 3.0 2.1 + - - +
845A ALA* 3.0 25.5 + - - +
1104A LYS* 5.1 1.6 + - - +
1107A LEU* 4.5 11.0 - - - +
1108A ASN* 2.3 44.0 + - - +
1387A ILE* 2.7 38.2 + - + +
1388A THR* 3.5 15.9 - - - +
1389A ARG 5.1 0.2 - - - +
1392A ILE* 4.7 0.2 - - - +
1405A PHE* 3.5 30.9 - - + -
1406A GLU* 4.9 0.2 - - - +
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Residues in contact with LEU 842 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
838A ILE* 2.9 37.7 + - + +
839A GLN* 3.3 4.2 + - - +
841A ARG* 1.3 75.8 - - + +
843A VAL* 1.3 64.5 + - - +
845A ALA* 3.7 1.4 + - - +
846A LEU* 3.4 26.8 + - + +
1071A ALA* 3.6 26.4 - - + +
1074A ILE* 4.8 12.1 - - + -
1075A GLY* 4.8 12.6 - - - +
1103A LEU* 5.7 0.9 - - + -
1107A LEU* 3.6 31.9 - - + -
1374A LEU* 4.7 14.4 - - + -
1387A ILE* 3.9 24.2 - - + -
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Residues in contact with VAL 843 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
839A GLN* 3.0 37.5 + - + +
840A ARG* 3.8 3.6 - - - +
842A LEU* 1.3 78.7 - - - +
844A LYS* 1.3 60.7 + - + +
846A LEU* 3.0 4.0 + - - -
847A GLU* 2.7 43.2 + - + +
1068A VAL* 4.5 15.3 - - + +
1071A ALA* 3.6 19.7 - - + -
1072A GLN* 4.8 5.6 - - + -
1136B ASP* 3.0 37.5 - - + +
1139B ILE* 6.1 0.7 - - + -
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Residues in contact with LYS 844 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
342A MET* 4.2 4.2 - - - -
840A ARG* 3.0 28.0 + - + +
843A VAL* 1.3 78.3 - - + +
845A ALA* 1.3 62.5 + - - +
846A LEU 3.2 0.7 + - - -
847A GLU* 2.5 61.5 + - - +
1392A ILE* 3.7 5.7 - - + +
1401A MET* 4.2 8.5 - - - +
1404A SER* 2.6 40.8 + - - -
1405A PHE* 3.4 37.5 - - + +
1428A SER* 3.6 2.4 + - - -
1132B GLU* 6.1 2.2 - - - +
1135B ARG* 3.3 20.8 - - - +
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Residues in contact with ALA 845 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
841A ARG 3.0 14.9 + - - +
842A LEU* 4.2 3.4 - - - +
844A LYS* 1.3 77.9 - - - +
846A LEU* 1.3 66.1 + - + +
848A ASP* 4.6 4.5 - - - +
849A ILE* 5.5 1.0 - - - +
1377A VAL* 5.4 4.2 - - + +
1385A MET* 6.1 2.6 - - + +
1387A ILE* 3.4 35.9 - - + -
1392A ILE* 3.4 25.5 - - + +
1401A MET* 5.1 2.9 - - - +
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Residues in contact with LEU 846 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
842A LEU* 3.4 18.1 + - - +
843A VAL* 3.0 4.5 + - - +
845A ALA* 1.3 84.1 - - + +
847A GLU* 1.3 53.1 + - - +
848A ASP* 2.4 24.9 + - - -
849A ILE* 3.2 38.7 + - + +
1067A GLY* 3.8 28.0 - - - +
1068A VAL* 4.5 6.8 + - - +
1070A ALA* 4.6 5.8 - - + -
1071A ALA* 4.3 12.3 - - + +
1373A LEU* 5.4 4.0 - - + +
1374A LEU* 3.9 27.4 - - + -
1377A VAL* 3.7 23.3 - - + -
1387A ILE* 6.0 0.7 - - + -
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Residues in contact with GLU 847 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
843A VAL* 2.7 25.4 + - + +
844A LYS* 2.5 43.7 + - - +
845A ALA 3.4 0.4 - - - -
846A LEU* 1.3 71.3 - - - +
848A ASP* 1.3 56.5 + - + +
1065A MET* 3.4 13.5 - - - +
1068A VAL* 4.0 14.5 - - + +
1401A MET* 3.8 16.4 - - + +
1427A VAL* 4.7 8.2 - - + +
1428A SER* 2.3 31.8 + - - +
1135B ARG* 2.7 39.9 + - - +
1139B ILE* 4.7 7.3 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il