Contacts of the helix formed by residues 834 - 877 (chain A) in PDB entry 6A69
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 834 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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479A THR 4.4 1.8 + - - -
687A ARG* 3.1 41.3 + - - +
689A GLU* 4.2 11.3 - - - +
690A VAL* 4.7 1.8 - - - +
830A LEU* 4.2 5.8 - - - +
832A ASP* 2.9 14.6 + - - +
833A ASP* 1.3 77.8 - - - +
835A PHE* 1.3 70.3 + - - +
836A THR* 3.1 37.1 + - - +
837A SER* 3.0 31.6 + - - +
838A ILE 3.7 2.1 + - - -
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Residues in contact with PHE 835 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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472A ILE* 4.2 24.5 - - + -
474A SER* 4.6 10.8 - - - -
479A THR* 3.5 27.8 + - + +
480A LEU* 3.9 23.8 - - + -
690A VAL* 4.8 5.6 - - + -
693A ALA* 4.5 9.6 - - + -
694A ILE* 3.8 28.9 - - + -
697A CYS* 5.1 4.0 - - + -
704A VAL* 3.8 28.5 - - + -
833A ASP 4.6 0.2 - - - -
834A ASN* 1.3 75.5 - - - +
836A THR* 1.3 61.5 + - - +
837A SER 3.1 0.4 - - - -
838A ILE* 2.9 47.5 + - + +
839A VAL* 3.1 19.5 + - + +
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Residues in contact with THR 836 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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689A GLU* 3.8 31.4 - - + -
690A VAL* 4.8 1.8 - - - +
693A ALA* 4.0 15.7 - - + -
834A ASN* 3.1 30.7 + - - +
835A PHE* 1.3 76.9 - - + +
837A SER* 1.3 59.2 + - - +
839A VAL* 3.1 13.3 + - - +
840A LYS* 2.9 38.3 + - - +
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Residues in contact with SER 837 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
453A ASP 4.5 5.2 + - - -
454A ASN* 4.0 14.2 + - - +
455A ASN* 3.4 12.4 - - - +
830A LEU* 3.8 20.9 - - - -
832A ASP* 3.6 20.2 + - - -
834A ASN* 3.0 19.7 + - - +
836A THR* 1.3 79.1 + - - +
838A ILE* 1.3 58.5 + - - +
840A LYS* 3.4 10.7 + - - +
841A ALA 2.9 21.7 + - - -
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Residues in contact with ILE 838 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466A MET* 5.5 0.9 - - - -
472A ILE* 3.8 30.1 - - + -
479A THR* 4.8 5.4 - - + -
795A THR* 3.8 28.9 - - + -
812A PHE* 4.1 26.5 - - + -
830A LEU* 4.1 21.3 - - + -
834A ASN 4.4 1.3 - - - +
835A PHE* 2.9 38.4 + - + +
837A SER* 1.3 76.3 - - - +
839A VAL* 1.3 62.1 + - + +
841A ALA* 3.2 6.7 + - - +
842A VAL* 3.0 26.3 + - + +
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Residues in contact with VAL 839 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
693A ALA* 4.0 31.4 - - + +
696A LYS* 4.6 14.1 - - + -
697A CYS* 4.2 18.8 - - + +
835A PHE* 3.1 17.9 + - + +
836A THR* 3.1 12.8 + - - +
838A ILE* 1.3 76.4 - - - +
840A LYS* 1.3 60.8 + - + +
842A VAL* 3.1 10.2 + - + +
843A MET* 3.0 28.0 + - + +
912A LEU* 4.4 22.4 - - + +
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Residues in contact with LYS 840 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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453A ASP* 4.6 35.8 + - + +
454A ASN* 5.6 3.2 + - - -
455A ASN* 4.6 3.1 - - + +
836A THR* 2.9 27.1 + - - +
837A SER* 3.8 10.3 - - - +
838A ILE 3.3 0.2 - - - -
839A VAL* 1.3 79.1 - - + +
841A ALA* 1.3 56.9 + - - +
843A MET* 3.3 18.4 + - + +
844A TRP* 3.0 42.4 + - + +
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Residues in contact with ALA 841 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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450A MET* 5.4 5.0 - - + +
455A ASN* 3.3 22.8 + - - +
463A CYS 5.3 0.2 - - - +
466A MET* 3.7 28.9 - - + +
812A PHE* 4.2 10.5 - - + -
828A ILE* 5.2 2.9 - - + -
837A SER 2.9 9.3 + - - +
838A ILE 3.2 9.4 + - - +
840A LYS* 1.3 75.4 - - - +
842A VAL* 1.3 60.0 + - - +
844A TRP* 3.3 6.7 + - - +
845A GLY 3.0 23.6 + - - -
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Residues in contact with VAL 842 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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466A MET* 3.6 24.2 - - + -
467A GLY 4.4 5.6 + - - +
469A ALA* 4.9 7.9 - - + -
472A ILE* 4.9 9.0 - - + -
697A CYS* 5.5 5.2 - - - -
702A ILE* 4.3 17.9 - - + -
838A ILE* 3.0 22.6 + - + +
839A VAL* 3.5 10.5 - - + +
841A ALA* 1.3 76.0 - - - +
843A MET* 1.3 63.4 + - - +
845A GLY* 3.3 1.2 + - - -
846A ARG* 3.0 43.5 + - - +
912A LEU* 4.4 15.3 - - + -
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Residues in contact with MET 843 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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696A LYS* 6.1 0.2 - - + -
839A VAL* 3.0 14.6 + - + +
840A LYS* 3.4 23.8 - - + +
842A VAL* 1.3 77.1 - - - +
844A TRP* 1.3 59.7 + - + +
846A ARG* 3.2 12.3 + - - +
847A ASN* 3.0 23.7 + - - +
907A PRO* 3.7 26.5 - - + -
908A THR 3.3 27.4 - - - +
909A GLU* 4.0 20.0 - - + +
911A LEU* 4.3 7.1 - - + +
912A LEU* 3.8 30.4 - - + +
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Residues in contact with TRP 844 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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446A SER* 3.2 33.4 - - - -
449A LYS* 4.3 36.8 - - + -
450A MET* 3.7 39.6 - - + +
453A ASP* 3.9 25.0 + - + +
455A ASN* 5.7 2.5 - - + -
463A CYS 4.9 0.7 - - - -
840A LYS* 3.0 35.9 + - + +
841A ALA* 3.3 4.5 + - - +
843A MET* 1.3 78.7 - - + +
845A GLY* 1.3 58.3 + - - +
847A ASN* 3.0 40.3 + - + +
848A VAL* 3.1 20.1 + - + +
905A GLU 4.3 5.4 - - - -
906A PRO* 4.7 1.1 - - + -
907A PRO* 3.6 30.6 - - + +
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Residues in contact with GLY 845 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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450A MET* 5.4 0.2 - - - +
463A CYS 3.4 14.5 + - - +
464A GLU* 4.4 4.9 - - - +
466A MET 3.3 23.6 - - - -
467A GLY* 3.4 16.2 + - - -
841A ALA 3.0 10.9 + - - -
842A VAL 3.3 0.6 + - - -
844A TRP* 1.3 73.4 - - - +
846A ARG* 1.3 65.9 + - - +
848A VAL* 3.9 3.4 + - - +
849A TYR* 3.8 16.1 + - - +
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Residues in contact with ARG 846 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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467A GLY* 2.9 28.0 + - - +
700A ALA* 3.7 31.5 + - - +
702A ILE* 4.3 5.9 - - - +
842A VAL* 3.0 34.8 + - + +
843A MET* 3.2 9.2 + - - +
845A GLY* 1.3 76.3 - - - +
847A ASN* 1.3 57.2 - - - +
848A VAL 3.4 0.2 + - - -
849A TYR* 3.4 6.1 + - - +
850A ASP* 3.0 29.6 + - - +
911A LEU* 3.4 39.3 + - + +
912A LEU* 5.0 1.5 - - + +
914A ARG* 3.8 40.2 + - - +
916A PRO* 3.7 23.0 - - - +
917A TYR* 4.9 7.9 - - - +
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Residues in contact with ASN 847 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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843A MET 3.0 12.5 + - - +
844A TRP* 3.0 25.9 + - + +
846A ARG* 1.3 77.6 - - - +
848A VAL* 1.3 58.8 + - + +
850A ASP* 3.4 3.5 + - - +
851A SER* 2.9 31.8 + - - -
854A LYS* 5.1 1.7 + - - -
905A GLU* 2.8 33.6 + - - +
906A PRO 4.5 1.6 - - - +
907A PRO* 3.2 35.2 - - + +
911A LEU* 4.0 11.2 - - + +
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Residues in contact with VAL 848 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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439A VAL* 5.2 3.6 - - + +
442A SER* 4.2 16.1 + - - +
443A LEU* 4.7 15.5 - - + -
446A SER* 4.3 17.9 - - - +
463A CYS* 3.9 23.1 - - - -
464A GLU* 4.5 20.0 - - + -
844A TRP* 3.1 14.2 + - + +
845A GLY* 4.4 4.5 - - - +
846A ARG 3.3 0.4 - - - -
847A ASN* 1.3 77.2 - - + +
849A TYR* 1.3 63.8 + - - +
851A SER* 3.1 7.3 + - - -
852A ILE* 3.0 38.5 + - + +
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Residues in contact with TYR 849 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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362A LEU* 3.6 28.5 - - + -
365A LYS* 5.3 7.2 - - - -
464A GLU* 5.1 6.9 - - + +
468A ASN* 6.1 1.1 - - - -
845A GLY 3.8 10.0 + - - +
846A ARG* 3.4 7.6 + - - +
848A VAL* 1.3 79.7 - - - +
850A ASP* 1.3 64.9 + - - +
852A ILE* 3.9 12.8 + - + +
853A SER* 4.0 11.6 + - - -
914A ARG* 5.1 0.7 - - - -
917A TYR* 3.9 53.1 - + + -
921A LYS* 4.3 6.4 + - - +
922A PRO 3.7 18.9 + - - -
923A LEU* 4.1 25.8 + - + +
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Residues in contact with ASP 850 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
846A ARG 3.0 12.5 + - - +
847A ASN* 4.1 7.0 - - - +
848A VAL 3.2 0.2 - - - -
849A TYR* 1.3 81.8 - - - +
851A SER* 1.3 60.6 + - - +
853A SER* 3.3 10.8 + - - -
854A LYS* 3.0 33.8 + - + +
911A LEU* 3.3 18.9 - - + +
914A ARG* 2.7 46.7 + - - -
917A TYR* 3.9 5.7 + - - -
993A ILE* 4.0 8.2 - - + +
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Residues in contact with SER 851 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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442A SER* 4.3 6.6 - - - -
847A ASN* 2.9 22.8 + - - -
848A VAL* 3.1 7.1 + - - -
850A ASP* 1.3 74.3 - - - +
852A ILE* 1.3 64.7 + - - +
854A LYS* 3.7 18.4 - - - +
855A PHE* 3.0 23.2 + - - +
902A LEU 4.0 2.1 + - - +
903A ALA* 2.8 39.8 + - - +
905A GLU* 5.4 2.2 - - - -
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Residues in contact with ILE 852 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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362A LEU* 3.6 32.1 - - + -
366A LEU* 4.2 28.3 - - + -
435A LEU* 5.9 0.9 - - + -
438A ALA* 5.1 8.3 - - + -
439A VAL* 3.7 30.7 - - + +
442A SER* 4.8 3.8 - - - +
848A VAL* 3.0 28.7 + - + +
849A TYR* 4.0 10.3 - - + +
850A ASP 3.2 0.4 - - - -
851A SER* 1.3 76.3 - - - +
853A SER* 1.3 59.8 + - - +
855A PHE* 3.2 12.4 + - + +
856A LEU* 2.9 28.5 + - + +
923A LEU* 5.2 8.7 - - + -
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Residues in contact with SER 853 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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849A TYR* 4.0 11.1 + - - -
850A ASP* 3.3 10.5 + - - -
852A ILE* 1.3 78.0 - - - +
854A LYS* 1.3 62.2 + - - +
856A LEU* 3.8 9.4 - - - -
857A GLN* 3.0 27.0 + - - +
923A LEU* 4.5 17.0 - - - -
928A MET* 3.3 26.4 - - - +
993A ILE* 3.3 17.5 - - - +
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Residues in contact with LYS 854 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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847A ASN* 5.1 3.0 + - - -
850A ASP* 3.0 20.8 + - + +
851A SER* 3.7 21.8 - - - +
852A ILE 3.2 0.2 - - - -
853A SER* 1.3 78.7 + - - +
855A PHE* 1.3 61.1 + - - +
857A GLN* 4.2 4.1 + - - +
858A PHE 4.3 3.5 + - - -
902A LEU* 3.3 26.6 + - + +
905A GLU* 3.4 38.7 - - - +
990A ALA* 3.3 24.8 - - - +
991A ARG* 3.2 35.4 - - - +
993A ILE* 3.6 17.5 - - + +
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Residues in contact with PHE 855 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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432A PRO* 6.5 0.2 - - + -
434A GLY 5.2 4.5 - - - -
435A LEU* 4.5 23.6 - - + -
438A ALA* 3.8 28.3 - - + -
851A SER 3.0 14.0 + - - +
852A ILE* 3.3 11.2 - - + +
854A LYS* 1.3 78.0 - - - +
856A LEU* 1.3 67.7 + - + +
858A PHE* 3.3 6.6 + + - +
859A GLN* 3.1 46.9 + - + +
894A MET 4.3 7.6 - - - -
895A ASP* 4.6 9.0 - - - -
898A ALA* 4.5 2.2 - - + -
899A SER* 3.7 41.3 - - - -
902A LEU* 4.0 19.8 - - + +
903A ALA* 4.9 9.2 - - + -
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Residues in contact with LEU 856 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366A LEU* 4.2 5.8 - - + -
369A LEU* 4.6 10.5 - - + -
435A LEU* 4.2 28.7 - - + -
852A ILE* 2.9 19.2 + - + +
853A SER* 3.0 8.4 + - - +
855A PHE* 1.3 82.6 - - + +
857A GLN* 1.3 61.4 + - - +
859A GLN* 3.8 4.4 - - + +
860A LEU* 2.9 50.1 + - + +
923A LEU* 3.7 23.6 - - + -
924A ILE* 4.3 20.9 - - + -
928A MET* 3.8 15.3 - - + -
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Residues in contact with GLN 857 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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853A SER 3.0 10.5 + - - +
854A LYS 4.5 3.1 - - - +
855A PHE 3.3 0.4 - - - -
856A LEU* 1.3 76.3 - - - +
858A PHE* 1.3 64.2 + - - +
861A THR* 2.9 31.7 + - - +
928A MET* 3.5 31.5 - - + +
931A ASN* 3.8 30.9 - - + +
932A ILE* 3.2 19.1 - - + +
935A HIS* 6.2 0.8 - - - -
989A ASN 4.1 2.8 + - - -
990A ALA* 3.3 37.9 + - + +
992A LYS 3.8 16.6 + - - -
993A ILE* 4.3 13.0 - - - +
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Residues in contact with PHE 858 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
854A LYS 4.3 2.7 + - - +
855A PHE* 3.3 11.3 + + - +
856A LEU 3.3 0.2 - - - -
857A GLN* 1.3 82.6 - - - +
859A GLN* 1.3 67.5 + - + +
861A THR* 3.4 5.0 + - - -
862A VAL* 3.1 45.8 + - + +
893A ILE* 4.1 11.9 - - + -
894A MET* 4.3 4.0 - - - -
898A ALA* 3.8 31.0 - - + -
902A LEU* 4.6 10.3 - - + -
983A GLN* 3.5 30.5 - - + -
986A ASN* 4.3 12.1 - - + +
987A GLU* 3.6 38.4 - - + -
990A ALA* 4.0 19.1 - - + -
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Residues in contact with GLN 859 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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432A PRO* 3.4 39.6 - - + +
435A LEU* 4.4 8.5 - - - +
855A PHE* 3.1 37.6 + - + +
856A LEU* 4.0 6.2 - - + +
857A GLN 3.3 0.2 - - - -
858A PHE* 1.3 85.3 - - + +
860A LEU* 1.3 71.9 + - - +
862A VAL* 3.5 4.5 + - - +
863A ASN* 3.1 25.3 + - - +
894A MET* 3.7 45.2 + - + +
895A ASP* 5.1 3.7 + - - +
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Residues in contact with LEU 860 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
369A LEU* 5.4 1.6 - - + -
373A ILE* 3.7 30.3 - - + -
856A LEU* 2.9 33.4 + - + +
857A GLN* 4.5 0.2 - - - -
859A GLN* 1.3 81.2 + - - +
861A THR* 1.3 64.7 + - - +
863A ASN* 3.4 8.9 + - + +
864A VAL* 3.0 37.2 + - + +
924A ILE* 5.6 7.4 - - + -
929A MET* 6.6 0.2 - - - -
932A ILE* 3.9 26.9 - - + -
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Residues in contact with THR 861 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
857A GLN* 2.9 19.4 + - - +
858A PHE 3.6 4.9 - - - +
860A LEU* 1.3 74.7 - - - +
862A VAL* 1.3 65.1 + - - +
864A VAL* 3.3 5.0 + - - +
865A VAL* 3.1 34.7 + - + +
931A ASN 4.8 0.9 + - - -
932A ILE* 3.4 25.5 + - - +
935A HIS* 4.2 16.5 - - + +
936A ALA* 4.8 4.0 - - - +
939A GLN* 4.5 3.1 - - - +
983A GLN* 4.5 6.1 - - - +
986A ASN* 3.5 27.8 + - - +
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Residues in contact with VAL 862 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
858A PHE* 3.1 40.8 + - + +
859A GLN 4.0 3.6 - - - +
861A THR* 1.3 75.9 - - - +
863A ASN* 1.3 61.7 + - - +
865A VAL* 3.5 1.9 + - - +
866A ALA* 3.0 25.2 + - + +
890A VAL* 4.0 21.5 - - + -
893A ILE* 5.6 1.6 - - + -
894A MET* 3.7 31.9 - - + -
979A PHE* 5.0 3.3 - - + -
983A GLN* 3.2 32.8 - - + +
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Residues in contact with ASN 863 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373A ILE* 3.9 14.6 - - - +
429A VAL* 3.6 20.3 - - - +
430A ALA* 3.3 41.4 - - - +
432A PRO* 4.3 7.1 - - - +
859A GLN* 3.1 23.4 + - - +
860A LEU* 3.7 11.6 - - + +
862A VAL* 1.3 77.9 - - - +
864A VAL* 1.3 64.4 + - + +
866A ALA* 4.0 0.3 - - - +
867A VAL* 3.0 30.1 + - - +
894A MET* 4.7 1.3 - - - -
----------------------------------------------------------
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Residues in contact with VAL 864 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
860A LEU* 3.0 33.7 + - + +
861A THR* 3.3 4.0 + - - +
863A ASN* 1.3 76.0 - - + +
865A VAL* 1.3 64.6 + - - +
867A VAL* 3.4 3.2 + - - +
868A ILE* 3.0 45.3 + - + +
932A ILE* 5.1 6.1 - - + -
933A LEU* 5.9 5.2 - - + -
936A ALA* 4.1 23.8 - - + -
940A LEU* 5.7 0.2 - - + -
----------------------------------------------------------
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Residues in contact with VAL 865 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
861A THR* 3.1 18.1 + - + +
862A VAL 4.2 1.8 - - - +
864A VAL* 1.3 76.7 - - - +
866A ALA* 1.3 63.1 + - - +
868A ILE* 4.1 0.5 - - - +
869A VAL* 3.0 34.3 + - + +
936A ALA* 3.9 29.8 - - + +
939A GLN* 3.3 45.1 - - + +
940A LEU* 4.6 8.5 - - + +
943A VAL* 5.3 0.4 - - + -
979A PHE* 3.6 22.0 - - + -
983A GLN* 4.6 1.1 - - - +
----------------------------------------------------------
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Residues in contact with ALA 866 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429A VAL* 3.8 28.0 - - + -
862A VAL* 3.0 21.5 + - + +
865A VAL* 1.3 77.4 - - - +
867A VAL* 1.3 58.5 + - - +
869A VAL* 4.0 3.5 - - - +
870A ALA* 3.0 30.5 + - - +
882A LEU* 5.4 3.3 - - + +
887A MET* 4.9 12.6 - - - +
890A VAL* 5.3 1.8 - - + -
979A PHE* 4.4 19.2 - - + -
----------------------------------------------------------
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Residues in contact with VAL 867 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377A GLY* 6.1 0.2 - - - -
380A MET* 3.6 34.5 - - + -
426A VAL* 4.5 13.2 - - + -
429A VAL* 4.9 3.1 - - + -
430A ALA* 4.1 18.2 - - + -
863A ASN* 3.0 34.9 + - - +
864A VAL* 4.0 3.6 - - - +
866A ALA* 1.3 78.1 - - - +
868A ILE* 1.3 62.8 + - + +
870A ALA* 3.4 5.3 + - - +
871A PHE* 2.9 27.5 + - - +
----------------------------------------------------------
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Residues in contact with ILE 868 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380A MET* 6.4 0.2 - - - -
864A VAL* 3.0 37.3 + - + +
867A VAL* 1.3 81.9 - - + +
869A VAL* 1.3 58.0 + - - +
871A PHE* 4.5 5.8 - - + -
872A THR* 2.9 42.2 + - - +
940A LEU* 3.8 37.2 - - + -
944A PHE* 5.0 4.0 - - + -
----------------------------------------------------------
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Residues in contact with VAL 869 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
865A VAL* 3.0 28.6 + - + +
866A ALA* 4.0 4.5 - - - +
868A ILE* 1.3 74.4 - - - +
870A ALA* 1.3 63.2 + - - +
873A GLY* 3.0 24.7 + - - -
881A PRO* 3.9 25.6 - - + +
882A LEU* 4.9 15.5 - - + -
940A LEU* 4.2 15.0 - - + -
943A VAL* 3.7 33.7 - - + -
944A PHE* 4.4 12.5 - - + -
947A LEU* 6.1 0.4 - - + -
975A VAL* 5.8 0.7 - - + -
979A PHE* 5.5 3.8 - - + -
----------------------------------------------------------
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Residues in contact with ALA 870 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384A THR* 4.9 2.9 - - + -
422A ILE* 5.8 0.9 - - + -
426A VAL* 3.8 29.6 - - + -
866A ALA 3.0 18.8 + - - +
867A VAL* 3.8 4.9 - - - +
869A VAL* 1.3 78.3 - - - +
871A PHE* 1.3 56.5 + - - +
874A ALA* 2.9 35.0 + - - +
880A SER* 4.1 19.6 - - - -
881A PRO* 5.0 0.2 - - - -
882A LEU* 6.6 0.2 - - + -
887A MET* 4.9 9.0 - - + -
----------------------------------------------------------
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Residues in contact with PHE 871 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380A MET* 3.6 31.2 - - + -
383A ILE* 3.8 11.7 - - + -
384A THR* 3.7 26.0 - - + +
387A ILE* 3.7 19.1 - - + -
867A VAL 2.9 17.9 + - - +
868A ILE* 4.0 6.7 - - + +
870A ALA* 1.3 77.1 - - - +
872A THR* 1.3 73.7 + - - +
874A ALA* 3.3 2.3 + - - +
875A CYS* 2.9 57.4 + - - -
----------------------------------------------------------
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Residues in contact with THR 872 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
868A ILE* 2.9 29.5 + - - +
871A PHE* 1.3 84.5 - - - +
873A GLY* 1.3 66.0 - - - +
875A CYS* 3.0 4.9 + - + +
876A ILE* 3.0 42.7 + - + +
944A PHE* 3.6 27.7 - - + -
948A PHE* 5.8 2.7 - - + -
----------------------------------------------------------
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Residues in contact with GLY 873 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
869A VAL 3.0 17.4 + - - -
872A THR* 1.3 76.8 - - - +
874A ALA* 1.3 56.3 + - - +
876A ILE* 5.3 2.0 - - - -
877A THR* 3.0 27.6 + - - +
879A ASP 3.0 15.6 - - - +
880A SER* 4.7 0.4 - - - -
881A PRO* 4.5 10.1 - - - -
944A PHE* 4.6 5.3 - - - -
947A LEU* 4.9 15.3 - - - -
948A PHE* 5.6 2.2 - - - -
----------------------------------------------------------
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Residues in contact with ALA 874 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384A THR* 5.3 5.8 - - - -
387A ILE* 5.0 1.2 - - - +
388A LEU* 3.3 38.1 - - + +
391A TYR* 5.4 3.5 - - - +
422A ILE* 5.5 2.5 - - + -
870A ALA 2.9 22.9 + - - +
871A PHE* 3.5 4.5 - - - +
873A GLY* 1.3 71.6 - - - +
875A CYS* 1.3 58.9 + - - +
877A THR 2.9 16.2 - - - +
878A GLN* 4.4 1.9 - - - -
879A ASP 3.3 20.8 + - - +
880A SER* 4.1 5.6 - - - +
----------------------------------------------------------
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Residues in contact with CYS 875 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384A THR* 6.1 0.7 - - - -
387A ILE* 3.8 30.5 - - + +
388A LEU* 5.8 0.4 - - - -
391A TYR* 4.8 13.2 - - - -
871A PHE* 2.9 54.6 + - + +
872A THR* 3.0 7.3 + - + +
874A ALA* 1.3 80.2 - - - +
876A ILE* 1.3 70.8 + - + +
----------------------------------------------------------
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Residues in contact with ILE 876 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391A TYR* 3.6 17.2 + - - -
872A THR* 3.0 46.8 + - + +
873A GLY 4.7 0.4 - - - +
875A CYS* 1.3 84.4 - - + +
877A THR* 1.3 65.6 + - - +
948A PHE* 3.6 41.1 - - + -
960A ARG* 6.4 0.2 - - - -
----------------------------------------------------------
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Residues in contact with THR 877 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391A TYR* 4.7 2.0 - - - -
873A GLY* 3.0 22.7 + - - +
874A ALA 2.9 21.7 - - - +
875A CYS 3.9 0.2 - - - -
876A ILE* 1.3 84.8 - - - +
878A GLN* 1.3 63.1 + - - +
879A ASP* 3.1 16.8 + - + +
881A PRO* 6.1 1.1 - - + -
947A LEU* 5.9 5.8 - - + -
948A PHE* 5.5 2.2 - - + -
960A ARG* 4.4 14.7 - - + +
961A ASN* 3.3 30.8 + - - +
972A TYR* 4.5 15.3 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il