Contacts of the helix formed by residues 109 - 168 (chain C) in PDB entry 6A9P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 109 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108C HIS* 1.3 96.9 - - + +
110C THR* 1.3 59.9 + - - +
112C LEU* 3.4 8.0 - - - +
113C ALA* 3.1 25.5 + - - +
109D MET* 3.3 44.9 - - + +
112D LEU* 3.9 21.6 - - + +
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Residues in contact with THR 110 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108C HIS 3.3 4.2 - - - +
109C MET* 1.3 79.0 - - - +
111C LYS* 1.3 61.9 + - + +
113C ALA* 3.3 7.5 + - + +
114C ASP* 2.9 42.8 + - - +
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Residues in contact with LYS 111 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108C HIS* 3.6 23.9 + - - +
109C MET 3.4 0.4 - - - -
110C THR* 1.3 78.2 - - + +
112C LEU* 1.3 61.7 + - - +
114C ASP* 3.3 10.6 + - - +
115C VAL* 3.1 28.3 + - - +
206E GLU* 3.6 30.3 - - - +
209E ARG* 6.4 0.4 - - - -
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Residues in contact with LEU 112 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108C HIS 3.3 12.1 + - - +
109C MET 3.4 8.7 - - - +
110C THR 3.2 0.8 - - - -
111C LYS* 1.3 75.2 - - - +
113C ALA* 1.3 65.2 + - - +
115C VAL* 3.2 7.9 + - - +
116C TYR* 3.1 36.4 + - + -
109D MET* 3.7 41.1 - - + +
112D LEU* 5.4 3.6 - - + -
113D ALA* 4.3 15.0 - - + +
203E ILE* 3.6 32.3 - - + +
206E GLU* 4.6 16.5 + - + -
207E GLU* 5.5 4.5 - - + +
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Residues in contact with ALA 113 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109C MET 3.1 10.8 + - - +
110C THR* 3.5 12.6 - - + +
112C LEU* 1.3 79.3 - - - +
114C ASP* 1.3 59.4 + - - +
116C TYR* 3.4 1.4 + - - +
117C GLN* 2.9 45.0 + - - +
112D LEU* 3.7 21.2 - - + +
116D TYR* 3.9 18.2 - - + +
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Residues in contact with ASP 114 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110C THR* 2.9 31.2 + - - +
111C LYS* 3.5 13.6 - - - +
112C LEU 3.2 0.2 - - - -
113C ALA* 1.3 75.7 - - - +
115C VAL* 1.3 60.1 + - + +
117C GLN* 3.9 14.5 - - - +
118C ALA* 3.0 30.7 + - - +
121C ARG* 5.6 0.2 + - - -
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Residues in contact with VAL 115 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111C LYS 3.1 15.6 + - - +
112C LEU* 3.2 6.7 + - - +
114C ASP* 1.3 76.6 - - + +
116C TYR* 1.3 63.3 + - - +
118C ALA* 3.5 6.0 + - - +
119C GLU* 3.3 16.6 + - - +
199E PHE* 3.8 17.9 - - + -
202E LYS* 4.2 28.5 - - + -
203E ILE* 3.7 24.7 - - + +
206E GLU* 4.0 25.1 - - + +
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Residues in contact with TYR 116 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112C LEU* 3.1 29.7 + - + -
113C ALA* 3.8 2.7 - - - +
115C VAL* 1.3 77.6 - - - +
117C GLN* 1.3 58.2 + - - +
119C GLU* 3.3 3.8 + - - +
120C LEU* 2.9 33.8 + - + +
112D LEU* 6.5 0.2 - - + -
113D ALA* 3.9 35.3 + - + +
116D TYR* 3.5 42.8 - + + -
117D GLN* 3.9 31.0 + - + +
120D LEU* 5.0 4.8 - - + +
199E PHE* 3.4 31.7 - + - -
203E ILE* 3.6 26.9 - - + +
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Residues in contact with GLN 117 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113C ALA* 2.9 31.1 + - - +
114C ASP* 3.9 17.6 - - - +
116C TYR* 1.3 73.0 - - - +
118C ALA* 1.3 57.3 + - - +
120C LEU* 3.7 8.5 - - + +
121C ARG* 2.8 50.3 + - - +
124C ARG* 4.3 1.3 + - - +
116D TYR* 2.6 36.6 + - + +
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Residues in contact with ALA 118 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114C ASP 3.0 19.7 + - - +
115C VAL* 3.5 7.4 - - - +
116C TYR 3.3 0.2 - - - -
117C GLN* 1.3 76.2 - - - +
119C GLU* 1.3 62.0 + - - +
121C ARG* 3.4 21.2 + - - +
122C GLU* 3.1 22.7 + - - +
202E LYS* 6.2 1.6 - - - +
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Residues in contact with GLU 119 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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115C VAL 3.3 3.8 + - - +
116C TYR 3.8 3.6 - - - +
118C ALA* 1.3 74.9 - - - +
120C LEU* 1.3 66.8 + - - +
122C GLU* 3.4 17.9 + - - +
123C LEU* 3.1 39.3 + - + +
120D LEU* 3.8 22.4 - - + -
124D ARG* 3.9 9.0 + - - +
195E GLU* 3.9 18.7 - - - +
198E ARG* 5.5 3.7 + - - -
199E PHE* 3.7 50.6 - - + +
202E LYS* 4.8 11.1 + - - -
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Residues in contact with LEU 120 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116C TYR* 2.9 21.9 + - + +
117C GLN* 3.7 6.7 - - + +
119C GLU* 1.3 76.7 - - - +
121C ARG* 1.3 61.2 + - - +
123C LEU* 3.3 2.6 + - - +
124C ARG* 2.3 73.7 + - - +
116D TYR* 3.6 33.2 - - + +
119D GLU* 3.5 17.3 - - + +
120D LEU* 3.7 27.6 - - + +
123D LEU* 2.8 34.7 - - + +
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Residues in contact with ARG 121 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117C GLN* 2.8 39.7 + - - +
118C ALA* 3.4 31.1 + - - +
119C GLU 3.3 0.2 - - - -
120C LEU* 1.3 77.2 - - - +
122C GLU* 1.3 61.8 + - - +
124C ARG* 3.1 11.5 + - - +
125C LEU* 3.1 45.0 + - + +
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Residues in contact with GLU 122 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118C ALA 3.1 11.6 + - - +
119C GLU* 3.7 24.7 - - - +
121C ARG* 1.3 79.6 - - - +
123C LEU* 1.3 69.9 + - + +
125C LEU* 3.4 9.8 + - - +
126C ARG* 3.1 63.8 + - + +
195E GLU* 4.9 9.9 - - - +
198E ARG* 5.4 7.1 + - - -
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Residues in contact with LEU 123 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119C GLU* 3.1 42.0 + - + +
120C LEU 3.3 3.6 + - - +
122C GLU* 1.3 84.5 - - + +
124C ARG* 1.3 63.6 + - - +
126C ARG* 3.4 10.4 + - - +
127C LEU* 3.0 22.7 + - - +
120D LEU* 2.9 34.5 - - + -
123D LEU* 3.6 26.5 - - + +
124D ARG* 3.6 25.6 - - + +
127D LEU* 4.2 19.0 - - + +
195E GLU* 5.0 11.9 - - - +
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Residues in contact with ARG 124 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117C GLN* 4.3 1.4 + - - +
120C LEU* 2.3 96.6 + - - +
121C ARG* 3.1 10.2 - - - +
123C LEU* 1.3 76.0 - - - +
125C LEU* 1.3 58.9 + - + +
127C LEU* 3.2 7.9 + - + +
128C ASP* 2.7 42.0 + - - +
119D GLU* 3.5 11.5 + - - +
123D LEU* 4.0 21.3 - - + +
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Residues in contact with LEU 125 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121C ARG* 3.1 36.2 + - + +
122C GLU* 3.7 8.3 - - - +
123C LEU 3.3 0.2 - - - -
124C ARG* 1.3 77.2 - - + +
126C ARG* 1.3 58.8 + - + +
128C ASP* 3.2 14.7 + - + +
129C GLN* 2.9 45.0 + - + +
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Residues in contact with ARG 126 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122C GLU* 3.1 47.8 + - + +
123C LEU* 3.7 10.3 - - - +
125C LEU* 1.3 77.1 - - + +
127C LEU* 1.3 57.9 + - - +
129C GLN* 3.2 16.3 + - - +
130C LEU* 2.9 33.7 + - + +
127D LEU* 4.0 27.1 - - + -
195E GLU* 4.7 13.6 + - - -
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Residues in contact with LEU 127 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123C LEU 3.0 13.7 + - - +
124C ARG* 3.5 10.1 - - + +
126C ARG* 1.3 78.4 - - - +
128C ASP* 1.3 62.2 + - - +
130C LEU* 4.5 1.3 - - - -
131C THR* 2.9 43.9 + - + +
123D LEU* 5.0 17.9 - - + +
126D ARG* 4.3 35.4 - - + +
127D LEU* 4.0 15.2 - - + +
130D LEU* 3.0 40.4 - - + -
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Residues in contact with ASP 128 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124C ARG* 2.7 26.3 + - - +
125C LEU* 3.2 16.9 + - + +
127C LEU* 1.3 82.9 - - - +
129C GLN* 1.3 61.8 + - + +
131C THR* 2.8 20.3 + - - -
132C ALA* 3.2 13.5 + - - +
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Residues in contact with GLN 129 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125C LEU* 2.9 30.3 + - - +
126C ARG* 3.5 15.7 + - - +
128C ASP* 1.3 78.7 - - + +
130C LEU* 1.3 57.4 + - + +
132C ALA* 3.8 4.8 - - - +
133C ASN* 3.1 40.1 + - - +
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Residues in contact with LEU 130 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126C ARG* 2.9 16.6 + - + +
127C LEU 4.4 0.2 - - - -
129C GLN* 1.3 75.9 - - + +
131C THR* 1.3 59.9 + - - +
133C ASN* 3.7 10.1 - - + +
134C SER* 2.8 35.3 + - - -
127D LEU* 4.1 22.2 - - + +
130D LEU* 3.5 18.6 - - + +
131D THR* 3.6 35.2 - - + +
134D SER* 4.0 29.8 - - - +
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Residues in contact with THR 131 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127C LEU* 2.9 31.6 + - + +
128C ASP* 2.8 24.9 + - - -
130C LEU* 1.3 71.6 - - - +
132C ALA* 1.3 55.7 + - - +
134C SER* 3.5 6.2 + - - -
135C ALA* 3.0 29.3 + - - +
130D LEU* 3.7 21.1 - - + -
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Residues in contact with ALA 132 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128C ASP 3.2 14.1 + - - +
129C GLN* 3.8 6.1 - - - +
131C THR* 1.3 81.2 + - - +
133C ASN* 1.3 65.8 + - - +
135C ALA* 3.3 8.3 + - - +
136C ARG* 3.1 29.5 + - - +
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Residues in contact with ASN 133 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129C GLN* 3.1 25.3 + - - +
130C LEU* 3.7 15.0 - - + +
131C THR 3.4 0.2 - - - -
132C ALA* 1.3 80.6 - - - +
134C SER* 1.3 56.2 + - - +
136C ARG* 3.4 28.0 + - - +
137C LEU* 3.0 40.6 + - + +
134D SER* 5.2 4.3 - - - +
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Residues in contact with SER 134 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130C LEU 2.8 23.0 + - - -
131C THR* 3.7 7.2 - - - -
133C ASN* 1.3 69.7 - - - +
135C ALA* 1.3 60.7 + - - +
137C LEU* 3.4 9.8 + - - +
138C GLU* 2.9 36.8 + - - +
130D LEU* 3.8 16.5 - - - +
133D ASN* 5.2 0.5 - - - +
134D SER* 3.8 25.1 + - - -
137D LEU* 3.9 13.0 - - - +
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Residues in contact with ALA 135 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131C THR 3.0 17.9 + - - +
132C ALA* 3.3 7.8 + - - +
134C SER* 1.3 75.1 - - - +
136C ARG* 1.3 63.4 + - - +
138C GLU* 3.4 11.9 + - - +
139C VAL* 3.2 28.2 + - - +
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Residues in contact with ARG 136 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132C ALA* 3.1 19.6 + - - +
133C ASN* 3.5 29.0 + - - +
135C ALA* 1.3 75.9 - - - +
137C LEU* 1.3 60.9 + - + +
139C VAL* 3.3 8.2 + - - +
140C GLU* 3.0 27.7 + - - +
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Residues in contact with LEU 137 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133C ASN* 3.0 27.3 + - + +
134C SER* 3.6 7.4 - - - +
136C ARG* 1.3 81.5 - - + +
138C GLU* 1.3 56.4 + - - +
140C GLU* 3.4 8.7 + - - +
141C ARG* 2.8 31.4 + - - +
134D SER* 3.8 21.8 - - - +
137D LEU* 4.1 15.2 - - + +
138D GLU* 3.8 37.2 - - + +
141D ARG* 4.7 25.1 - - + +
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Residues in contact with GLU 138 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134C SER* 2.9 21.9 + - - +
135C ALA* 3.6 10.2 - - - +
137C LEU* 1.3 75.8 - - - +
139C VAL* 1.3 58.5 + - + +
141C ARG* 3.5 20.5 + - - +
142C ASP* 3.0 36.4 + - - +
137D LEU* 3.9 28.6 - - + +
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Residues in contact with VAL 139 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135C ALA 3.2 16.0 + - - +
136C ARG* 3.7 10.1 - - - +
138C GLU* 1.3 74.4 - - + +
140C GLU* 1.3 64.3 + - - +
142C ASP* 3.4 7.4 + - - +
143C ASN* 3.1 36.6 + - - +
----------------------------------------------------------
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Residues in contact with GLU 140 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136C ARG 3.0 16.7 + - - +
137C LEU* 3.8 9.6 - - - +
139C VAL* 1.3 78.3 - - - +
141C ARG* 1.3 56.5 + - - +
143C ASN* 3.3 8.9 + - + +
144C LEU* 3.0 42.0 + - + +
141D ARG* 2.8 44.6 + - + +
----------------------------------------------------------
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Residues in contact with ARG 141 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137C LEU 2.8 21.7 + - - +
138C GLU* 3.8 19.0 + - - +
140C GLU* 1.3 71.6 - - - +
142C ASP* 1.3 86.1 + - - +
144C LEU* 3.4 5.0 + - - +
145C ALA* 3.0 28.3 + - + +
137D LEU* 4.2 20.9 - - + +
140D GLU* 3.2 35.8 + - + +
141D ARG* 4.8 11.5 - - + +
144D LEU* 3.3 32.6 - - + +
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Residues in contact with ASP 142 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138C GLU* 3.0 19.4 + - - +
139C VAL* 3.6 8.0 - - - +
140C GLU 3.4 0.2 - - - -
141C ARG* 1.3 105.9 + - - +
143C ASN* 1.3 60.6 + - - +
145C ALA* 3.6 6.1 + - - +
146C GLN* 3.1 28.8 + - - +
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Residues in contact with ASN 143 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139C VAL* 3.1 29.6 + - - +
140C GLU* 3.6 12.4 - - + +
142C ASP* 1.3 75.2 - - - +
144C LEU* 1.3 67.3 + - + +
146C GLN* 3.2 23.8 - - + +
147C ASP* 3.0 30.6 + - - +
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Residues in contact with LEU 144 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140C GLU* 3.0 29.2 + - + +
141C ARG* 3.8 4.0 - - - +
143C ASN* 1.3 76.4 - - + +
145C ALA* 1.3 56.7 + - - +
147C ASP* 3.6 5.9 + - - +
148C LEU* 2.9 30.2 + - - +
141D ARG* 3.6 44.9 - - + +
144D LEU* 3.9 15.7 - - + +
145D ALA* 4.1 20.0 - - + +
148D LEU* 3.7 28.2 - - + +
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Residues in contact with ALA 145 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141C ARG* 3.0 19.6 + - + +
142C ASP* 3.7 7.9 - - - +
144C LEU* 1.3 73.8 - - - +
146C GLN* 1.3 58.8 - - - +
148C LEU* 3.4 8.2 + - - +
149C ALA* 3.0 28.2 + - - +
144D LEU* 3.8 15.1 - - + +
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Residues in contact with GLN 146 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142C ASP 3.1 13.1 + - - +
143C ASN* 3.2 30.7 + - - +
145C ALA* 1.3 75.4 - - - +
147C ASP* 1.3 73.0 + - - +
149C ALA* 3.3 8.0 + - - +
150C THR* 3.0 31.1 + - - +
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Residues in contact with ASP 147 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143C ASN* 3.0 22.4 + - - +
144C LEU* 3.9 5.4 - - - +
146C GLN* 1.3 89.4 + - - +
148C LEU* 1.3 60.7 + - - +
150C THR* 3.3 8.5 + - - -
151C VAL* 3.0 34.5 + - - +
148D LEU* 3.7 17.6 - - + +
152D ARG* 4.3 15.2 + - - +
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Residues in contact with LEU 148 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144C LEU 2.9 19.7 + - - +
145C ALA* 3.6 6.5 - - - +
146C GLN 3.3 0.2 - - - -
147C ASP* 1.3 73.9 - - - +
149C ALA* 1.3 59.7 + - - +
151C VAL* 4.0 0.4 - - - -
152C ARG* 3.0 58.3 + - - +
144D LEU* 4.7 20.4 - - + +
147D ASP* 3.9 18.2 - - + +
148D LEU* 3.6 40.1 - - + +
151D VAL* 3.7 16.8 - - + -
----------------------------------------------------------
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Residues in contact with ALA 149 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145C ALA 3.0 13.8 + - - +
146C GLN* 3.5 10.8 - - - +
147C ASP 3.3 0.2 - - - -
148C LEU* 1.3 76.2 - - - +
150C THR* 1.3 62.2 + - - +
152C ARG* 3.6 7.9 + - - +
153C GLN* 3.2 22.2 + - - +
----------------------------------------------------------
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Residues in contact with THR 150 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146C GLN* 3.0 16.5 + - - +
147C ASP* 3.4 13.5 + - - -
148C LEU 3.3 0.2 - - - -
149C ALA* 1.3 76.1 - - - +
151C VAL* 1.3 61.6 + - + +
153C GLN* 3.1 10.4 + - - +
154C LYS* 3.0 47.0 + - + +
----------------------------------------------------------
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Residues in contact with VAL 151 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147C ASP 3.0 15.9 + - - +
148C LEU 4.4 0.2 - - - +
150C THR* 1.3 86.4 - - + +
152C ARG* 1.3 57.1 + - - +
154C LYS* 3.6 14.2 - - + +
155C LEU* 2.9 27.5 + - - +
148D LEU* 4.4 2.2 - - + -
151D VAL* 3.9 22.7 - - + +
152D ARG* 3.7 60.8 - - + +
155D LEU* 4.5 11.8 - - + +
----------------------------------------------------------
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Residues in contact with ARG 152 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148C LEU* 3.0 48.7 + - + +
149C ALA* 3.8 7.6 - - - +
151C VAL* 1.3 77.6 - - - +
153C GLN* 1.3 55.7 + - - +
155C LEU* 3.5 10.1 + - + +
156C GLN* 3.0 27.0 + - - +
147D ASP* 4.9 14.1 + - - +
151D VAL* 3.9 21.3 - - + +
154D LYS* 5.9 5.1 - - - +
----------------------------------------------------------
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Residues in contact with GLN 153 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149C ALA 3.2 13.2 + - - +
150C THR* 3.1 12.8 + - - +
152C ARG* 1.3 73.7 - - - +
154C LYS* 1.3 59.4 + - + +
156C GLN* 3.3 13.2 + - - +
157C ASP* 3.0 57.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 154 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150C THR* 3.0 32.7 + - + +
151C VAL* 3.4 18.1 + - + +
153C GLN* 1.3 75.8 - - + +
155C LEU* 1.3 57.3 + - - +
157C ASP* 3.5 8.6 + - - +
158C GLU* 3.0 31.5 + - - +
155D LEU* 3.7 21.2 - - + +
----------------------------------------------------------
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Residues in contact with LEU 155 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151C VAL 2.9 18.6 + - - +
152C ARG* 3.5 9.9 - - + +
153C GLN 3.2 0.2 - - - -
154C LYS* 1.3 73.9 - - - +
156C GLN* 1.3 63.4 + - + +
158C GLU 3.3 1.2 + - - -
159C THR* 2.9 47.6 + - - +
151D VAL* 4.4 17.3 - - + -
154D LYS* 3.8 33.9 - - + +
155D LEU* 3.8 20.1 - - + +
158D GLU* 4.0 11.2 - - + -
----------------------------------------------------------
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Residues in contact with GLN 156 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152C ARG 3.0 14.2 + - - +
153C GLN* 3.6 20.0 - - - +
155C LEU* 1.3 81.3 - - + +
157C ASP* 1.3 62.8 + - - +
159C THR* 3.4 10.5 + - - +
160C ASN* 3.1 41.9 + - - +
----------------------------------------------------------
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Residues in contact with ASP 157 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153C GLN* 3.0 39.9 + - - +
154C LYS* 3.6 9.0 - - - +
155C LEU 3.3 0.2 - - - -
156C GLN* 1.3 78.3 - - - +
158C GLU* 1.3 61.7 + - - +
160C ASN* 3.2 12.5 + - - +
161C LEU* 3.1 29.0 + - + +
----------------------------------------------------------
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Residues in contact with GLU 158 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154C LYS 3.0 17.7 + - - +
155C LEU 3.8 3.6 - - - +
157C ASP* 1.3 74.7 - - - +
159C THR* 1.3 60.2 + - - +
161C LEU* 3.5 10.4 + - - +
162C ARG* 3.0 28.2 + - - +
155D LEU* 4.0 10.4 - - + +
158D GLU* 4.0 7.6 - - + +
159D THR* 3.1 47.8 + - - +
162D ARG* 2.9 37.5 + - - -
----------------------------------------------------------
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Residues in contact with THR 159 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155C LEU* 2.9 34.5 + - - +
156C GLN* 3.6 15.0 - - - +
158C GLU* 1.3 76.9 - - - +
160C ASN* 1.3 59.3 + - - +
162C ARG* 3.3 9.7 + - - +
163C LEU* 2.9 34.1 + - + +
158D GLU* 3.1 32.5 + - - +
----------------------------------------------------------
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Residues in contact with ASN 160 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156C GLN* 3.1 37.8 + - - +
157C ASP* 3.2 12.9 + - - +
159C THR* 1.3 78.9 - - - +
161C LEU* 1.3 60.9 + - + +
163C LEU* 3.5 14.7 + - - +
164C GLU* 3.1 29.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 161 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157C ASP* 3.1 19.2 + - + +
158C GLU* 3.9 11.0 - - - +
160C ASN* 1.3 74.8 - - + +
162C ARG* 1.3 67.2 + - - +
164C GLU* 3.5 15.3 + - - +
165C ALA* 3.0 23.6 + - - +
162D ARG* 3.4 38.9 - - - +
166D GLU* 4.9 6.2 - - - +
----------------------------------------------------------
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Residues in contact with ARG 162 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158C GLU 3.0 19.4 + - - +
159C THR* 3.3 18.4 + - - +
161C LEU* 1.3 74.7 - - - +
163C LEU* 1.3 70.4 + - - +
165C ALA* 3.2 4.2 + - - +
166C GLU* 2.9 66.1 + - + +
158D GLU* 2.9 34.6 + - - +
161D LEU* 3.6 36.6 - - - +
162D ARG* 3.7 29.9 - - + +
154F LYS* 6.0 2.0 - - - +
----------------------------------------------------------
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Residues in contact with LEU 163 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159C THR* 2.9 22.1 + - + +
160C ASN* 3.6 15.0 - - - +
162C ARG* 1.3 90.5 - - - +
164C GLU* 1.3 56.7 + - - +
166C GLU* 3.4 11.0 + - + +
167C ASN* 3.0 49.8 + - - +
----------------------------------------------------------
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Residues in contact with GLU 164 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160C ASN 3.1 13.9 + - - +
161C LEU* 3.8 17.9 - - - +
163C LEU* 1.3 78.9 - - - +
165C ALA* 1.3 64.3 + - - +
167C ASN* 3.6 12.0 + - - +
168C ASN* 3.5 22.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA 165 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161C LEU 3.0 14.5 + - - +
162C ARG* 3.5 9.4 - - - +
164C GLU* 1.3 76.3 - - - +
166C GLU* 1.3 60.5 + - - +
168C ASN* 2.9 19.2 - - - +
169C LEU* 3.6 1.2 + - - +
162D ARG 4.6 0.4 - - - +
165D ALA* 3.8 18.8 - - + -
166D GLU* 3.8 23.8 - - + +
169D LEU* 3.3 27.9 - - + +
----------------------------------------------------------
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Residues in contact with GLU 166 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162C ARG* 2.9 59.4 + - + +
163C LEU* 3.8 10.5 - - + +
165C ALA* 1.3 76.3 - - - +
167C ASN* 1.3 65.6 + - - +
169C LEU* 3.3 29.9 - - + +
170C ALA 4.5 0.9 + - - -
161D LEU* 5.1 6.6 - - - +
165D ALA* 3.9 17.3 - - + +
154F LYS* 5.4 6.0 + - - -
----------------------------------------------------------
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Residues in contact with ASN 167 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163C LEU* 3.0 45.4 + - - +
164C GLU* 4.1 8.2 - - - +
165C ALA 3.4 1.2 - - - -
166C GLU* 1.3 77.9 - - - +
168C ASN* 1.3 59.2 + - + +
169C LEU 3.3 0.7 + - - -
170C ALA* 4.2 10.2 + - - +
171C ALA* 5.1 1.0 + - - +
----------------------------------------------------------
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Residues in contact with ASN 168 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164C GLU* 3.5 18.2 + - - +
165C ALA 2.9 21.3 - - - +
167C ASN* 1.3 75.4 - - + +
169C LEU* 1.3 63.6 + - - +
170C ALA 3.5 0.4 - - - -
171C ALA* 3.6 11.4 + - + +
172C TYR* 3.2 39.2 + - + +
169D LEU* 3.1 22.9 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il