Contacts of the helix formed by residues 168 - 210 (chain C) in PDB entry 6A9P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 168 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164C GLU* 3.5 18.2 + - - +
165C ALA 2.9 21.3 - - - +
167C ASN* 1.3 75.4 - - + +
169C LEU* 1.3 63.6 + - - +
170C ALA 3.5 0.4 - - - -
171C ALA* 3.6 11.4 + - + +
172C TYR* 3.2 39.2 + - + +
169D LEU* 3.1 22.9 - - - +
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Residues in contact with LEU 169 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165C ALA 3.6 10.9 + - - +
166C GLU* 3.3 28.9 + - + +
167C ASN 3.3 1.4 - - - -
168C ASN* 1.3 79.6 + - - +
170C ALA* 1.3 59.4 + - - +
172C TYR* 3.1 3.5 + - - +
173C ARG* 2.9 30.0 + - - +
165D ALA* 3.9 17.3 - - + +
168D ASN* 3.5 35.7 - - + +
169D LEU* 3.6 22.2 - - + +
172D TYR* 3.8 17.0 - - + -
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Residues in contact with ALA 170 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
166C GLU 4.5 0.8 + - - -
167C ASN 4.2 8.5 + - - +
168C ASN 3.5 0.8 - - - -
169C LEU* 1.3 76.9 - - - +
171C ALA* 1.3 63.1 + - - +
173C ARG* 3.4 11.5 + - - +
174C GLN* 3.1 29.5 + - + +
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Residues in contact with ALA 171 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167C ASN 5.1 0.6 + - - +
168C ASN* 3.6 15.1 + - + +
169C LEU 3.3 0.4 - - - -
170C ALA* 1.3 79.2 - - - +
172C TYR* 1.3 62.0 + - + +
174C GLN* 3.3 8.3 + - - +
175C GLU* 3.0 32.4 + - - +
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Residues in contact with TYR 172 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
168C ASN* 3.2 23.1 + - + +
169C LEU* 3.1 8.6 + - - +
171C ALA* 1.3 79.5 - - + +
173C ARG* 1.3 60.5 + - - +
175C GLU* 3.4 18.2 + - - +
176C ALA* 3.0 27.9 + - - +
169D LEU* 3.3 42.2 - - + -
172D TYR* 3.8 17.8 - - + +
173D ARG* 3.6 48.7 + - + +
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Residues in contact with ARG 173 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
169C LEU 2.9 16.2 + - - +
170C ALA* 3.7 10.0 + - - +
172C TYR* 1.3 75.0 - - - +
174C GLN* 1.3 70.4 - - - +
176C ALA* 3.4 1.2 + - - +
177C ASP* 3.0 39.0 + - - +
172D TYR* 3.3 47.7 - - + -
143F ASN* 4.1 28.4 + - - +
146F GLN* 3.3 18.7 + - - -
147F ASP* 3.0 41.0 + - - -
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Residues in contact with GLN 174 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170C ALA* 3.1 19.8 + - + +
171C ALA* 3.5 11.7 - - - +
172C TYR 3.3 0.2 - - - -
173C ARG* 1.3 90.1 - - - +
175C GLU* 1.3 65.0 + - - +
177C ASP* 3.3 16.7 + - - +
178C GLU* 3.0 43.3 + - + +
143F ASN* 4.8 3.4 - - - +
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Residues in contact with GLU 175 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
171C ALA* 3.0 17.1 + - - +
172C TYR* 3.5 23.2 - - - +
174C GLN* 1.3 76.5 - - - +
176C ALA* 1.3 56.8 + - - +
178C GLU* 3.5 5.1 + - - +
179C ALA* 3.0 30.5 + - - +
173D ARG* 2.4 34.8 + - - +
176D ALA* 4.3 9.6 - - + +
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Residues in contact with ALA 176 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
172C TYR 3.0 13.4 + - - +
173C ARG 3.7 5.4 - - - +
175C GLU* 1.3 73.6 - - - +
177C ASP* 1.3 61.4 + - - +
179C ALA* 3.4 1.4 + - - +
180C THR* 2.9 35.4 + - - -
172D TYR* 3.6 31.4 - - + +
175D GLU* 3.9 23.3 - - + +
176D ALA* 4.1 11.3 - - - +
179D ALA* 5.0 0.5 - - - +
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Residues in contact with ASP 177 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
173C ARG* 3.0 30.0 + - - +
174C GLN* 3.3 14.3 + - - +
176C ALA* 1.3 77.9 - - - +
178C GLU* 1.3 60.2 + - + +
180C THR* 3.3 6.2 + - - -
181C LEU* 2.9 36.3 + - + +
172D TYR* 5.6 1.2 - - - -
175D GLU* 5.1 3.5 - - - +
139F VAL* 3.6 23.5 - - + +
143F ASN* 2.7 35.6 + - - +
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Residues in contact with GLU 178 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174C GLN* 3.0 34.5 + - + +
175C GLU* 4.0 5.2 - - - +
177C ASP* 1.3 77.9 - - + +
179C ALA* 1.3 57.6 + - - +
181C LEU* 3.3 12.9 + - - +
182C ALA* 2.9 30.0 + - - +
136F ARG* 4.0 28.0 + - - -
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Residues in contact with ALA 179 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
175C GLU 3.0 19.0 + - - +
176C ALA 3.7 3.8 - - - +
177C ASP 3.3 0.2 - - - -
178C GLU* 1.3 76.7 - - - +
180C THR* 1.3 57.4 + - - +
182C ALA* 3.5 6.4 + - - +
183C ARG* 3.1 22.7 + - - +
176D ALA* 3.9 19.1 - - + +
179D ALA* 3.5 26.2 - - + +
180D THR* 4.1 9.6 - - - +
183D ARG* 5.1 5.0 + - - +
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Residues in contact with THR 180 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
176C ALA 2.9 19.5 + - - -
177C ASP* 3.6 6.3 - - - -
179C ALA* 1.3 75.3 - - - +
181C LEU* 1.3 62.2 + - + +
183C ARG* 3.3 25.0 + - - +
184C LEU* 3.0 38.8 + - + +
175D GLU* 4.4 13.7 + - - +
179D ALA* 3.9 13.9 - - - +
139F VAL* 5.6 6.7 - - + -
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Residues in contact with LEU 181 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
177C ASP* 2.9 21.2 + - + +
178C GLU* 3.7 15.5 - - - +
180C THR* 1.3 76.8 - - - +
182C ALA* 1.3 56.6 + - - +
184C LEU* 3.4 11.4 + - + +
185C ASP* 3.0 28.4 + - - +
188C ARG* 5.1 1.2 + - - -
132F ALA 5.6 0.2 - - - +
135F ALA* 3.7 37.1 - - + +
136F ARG* 4.1 47.1 - - + +
139F VAL* 3.7 23.3 - - + -
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Residues in contact with ALA 182 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178C GLU 2.9 16.8 + - - +
179C ALA* 3.7 7.6 - - - +
180C THR 3.3 0.2 - - - -
181C LEU* 1.3 74.3 - - - +
183C ARG* 1.3 64.3 + - - +
185C ASP* 3.4 7.4 + - - +
186C LEU* 3.2 27.2 + - - +
183D ARG* 3.9 24.2 - - - +
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Residues in contact with ARG 183 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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179C ALA 3.1 14.5 + - - +
180C THR* 3.3 27.3 + - - +
182C ALA* 1.3 77.1 - - - +
184C LEU* 1.3 74.7 + - - +
186C LEU* 3.1 5.6 + - - +
187C GLU* 3.0 54.8 + - + +
178D GLU* 5.7 2.0 + - - +
179D ALA* 3.8 20.0 - - + +
182D ALA* 3.5 33.6 - - + +
183D ARG* 4.3 13.2 - - - +
186D LEU* 4.6 1.8 - - + -
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Residues in contact with LEU 184 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180C THR* 3.0 28.9 + - + +
181C LEU* 3.7 14.8 - - + +
182C ALA 3.3 0.2 - - - -
183C ARG* 1.3 91.9 - - - +
185C ASP* 1.3 66.0 + - - +
187C GLU* 3.2 18.3 + - + +
188C ARG* 3.0 41.0 + - - +
135F ALA* 4.2 22.2 - - + +
139F VAL* 5.9 2.2 - - + -
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Residues in contact with ASP 185 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
181C LEU 3.0 13.6 + - - +
182C ALA* 3.5 12.6 - - - +
184C LEU* 1.3 76.4 - - - +
186C LEU* 1.3 64.3 + - + +
188C ARG* 3.4 27.0 + - - +
189C LYS* 3.1 24.9 + - - +
128F ASP* 5.1 5.4 - - - +
132F ALA* 4.8 9.9 - - - +
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Residues in contact with LEU 186 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182C ALA 3.2 11.6 + - - +
183C ARG 3.1 8.3 + - - +
185C ASP* 1.3 80.8 - - + +
187C GLU* 1.3 64.8 + - - +
189C LYS* 3.2 9.0 + - + +
190C ILE* 3.0 25.8 + - - +
183D ARG* 3.2 47.3 - - + +
186D LEU* 3.8 12.8 - - + -
187D GLU* 3.3 24.9 - - + +
190D ILE* 3.9 16.4 - - + +
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Residues in contact with GLU 187 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
183C ARG* 3.0 40.2 + - + +
184C LEU* 3.2 21.6 + - - +
186C LEU* 1.3 75.1 - - - +
188C ARG* 1.3 57.4 + - + +
190C ILE* 3.4 8.5 + - - +
191C GLU* 3.1 32.2 + - + +
182D ALA* 5.4 1.6 - - - +
186D LEU* 3.2 26.2 - - + +
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Residues in contact with ARG 188 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
181C LEU 5.1 0.8 + - - -
184C LEU* 3.0 45.6 + - - +
185C ASP* 3.5 31.2 + - - +
187C GLU* 1.3 74.6 - - + +
189C LYS* 1.3 59.4 + - - +
191C GLU* 3.2 9.4 + - + +
192C SER* 2.9 29.2 + - - -
128F ASP* 4.7 5.8 + - - +
131F THR* 3.2 42.5 + - - +
132F ALA* 3.2 28.7 - - - +
135F ALA* 3.8 16.8 - - - +
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Residues in contact with LYS 189 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
185C ASP* 3.1 14.7 + - - +
186C LEU* 3.3 13.2 - - + +
188C ARG* 1.3 74.7 - - - +
190C ILE* 1.3 57.0 + - - +
192C SER* 3.3 7.6 + - - -
193C LEU* 2.9 57.6 + - + +
190D ILE* 3.6 31.5 - - + +
194D GLU* 3.5 21.8 + - - -
128F ASP* 4.8 15.7 - - - +
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Residues in contact with ILE 190 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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186C LEU 3.0 14.0 + - - +
187C GLU* 3.4 9.0 - - - +
188C ARG 3.2 0.2 - - - -
189C LYS* 1.3 74.5 - - - +
191C GLU* 1.3 70.4 + - - +
193C LEU* 3.2 7.7 + - - +
194C GLU* 3.0 45.1 + - + +
186D LEU* 3.3 55.2 - - + +
189D LYS* 4.2 12.6 - - + -
190D ILE* 3.7 20.2 - - + +
193D LEU* 4.9 8.5 - - + +
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Residues in contact with GLU 191 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
187C GLU* 3.1 18.7 + - + +
188C ARG* 3.2 10.5 + - + +
190C ILE* 1.3 79.8 - - + +
192C SER* 1.3 57.2 + - - +
194C GLU* 3.5 20.5 + - - +
195C GLU* 2.9 30.1 + - - +
126E ARG* 6.3 1.1 - - - +
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Residues in contact with SER 192 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188C ARG 2.9 13.2 + - - -
189C LYS* 3.4 15.9 - - - -
191C GLU* 1.3 77.2 - - - +
193C LEU* 1.3 58.1 + - - +
195C GLU* 3.4 14.4 + - - +
196C GLU* 2.9 29.4 + - - +
126E ARG* 6.1 3.1 - - - +
124F ARG* 4.3 20.4 - - - +
128F ASP* 4.2 20.2 + - - -
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Residues in contact with LEU 193 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
189C LYS* 2.9 48.3 + - + +
190C ILE* 3.2 4.7 + - - +
192C SER* 1.3 77.8 - - - +
194C GLU* 1.3 57.7 + - - +
196C GLU* 3.3 20.8 + - - +
197C ILE* 3.0 31.5 + - - +
190D ILE* 4.0 23.3 - - + +
193D LEU* 3.7 34.1 - - + -
194D GLU* 4.1 15.9 - - + +
197D ILE* 4.0 12.4 - - + +
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Residues in contact with GLU 194 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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190C ILE* 3.0 37.8 + - + +
191C GLU* 3.8 22.3 - - - +
193C LEU* 1.3 72.3 - - - +
195C GLU* 1.3 65.5 + - - +
197C ILE* 3.5 6.1 + - - +
198C ARG* 3.1 23.2 + - - +
193D LEU* 3.7 23.9 - - + +
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Residues in contact with GLU 195 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
191C GLU 2.9 15.0 + - - +
192C SER* 3.4 19.7 + - - +
194C GLU* 1.3 75.6 - - - +
196C GLU* 1.3 57.0 + - - +
198C ARG* 3.3 6.6 + - - +
199C PHE* 3.0 28.4 + - - +
119E GLU* 3.5 26.6 - - - +
122E GLU* 5.5 4.3 - - - +
123E LEU* 3.5 18.7 - - - +
126E ARG* 3.3 32.2 + - - -
124F ARG* 5.1 8.6 - - - +
127F LEU* 5.5 0.3 - - - +
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Residues in contact with GLU 196 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192C SER* 2.9 17.5 + - - +
193C LEU* 3.3 24.5 + - - +
195C GLU* 1.3 73.7 - - - +
197C ILE* 1.3 58.9 + - - +
199C PHE* 3.3 7.5 + - + +
200C LEU* 2.9 39.6 + - + +
197D ILE* 4.2 18.0 - - + +
201D ARG* 3.0 26.2 + - - -
124F ARG* 3.8 39.1 + - - +
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Residues in contact with ILE 197 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
193C LEU 3.0 9.9 + - - +
194C GLU* 3.6 9.4 - - - +
196C GLU* 1.3 76.3 - - - +
198C ARG* 1.3 66.6 + - + +
200C LEU* 3.2 7.5 + - - +
201C ARG* 3.0 45.3 + - - +
193D LEU* 3.5 32.5 - - + +
196D GLU* 3.6 31.6 - - + +
197D ILE* 2.9 30.3 - - + -
200D LEU* 4.0 11.8 - - + +
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Residues in contact with ARG 198 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
194C GLU 3.1 14.4 + - - +
195C GLU* 3.7 6.3 - - - +
197C ILE* 1.3 83.3 - - + +
199C PHE* 1.3 63.7 + - - +
201C ARG* 3.4 8.6 + - + +
202C LYS* 3.2 59.5 + - + +
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Residues in contact with PHE 199 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
195C GLU 3.0 17.2 + - - +
196C GLU* 3.6 7.6 - - + +
198C ARG* 1.3 74.5 - - - +
200C LEU* 1.3 76.5 + - + +
202C LYS* 3.2 11.9 + - + +
203C ILE* 2.9 52.8 + - + +
115E VAL* 3.8 20.0 - - + -
116E TYR* 3.7 15.5 - + - -
119E GLU* 2.9 43.7 - - + +
117F GLN* 6.0 2.5 - - + -
120F LEU* 3.2 33.0 - - + -
124F ARG* 4.3 10.1 - - - +
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Residues in contact with LEU 200 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
196C GLU* 2.9 28.3 + - + +
197C ILE* 3.5 5.2 - - - +
199C PHE* 1.3 89.2 - - + +
201C ARG* 1.3 57.7 + - - +
203C ILE* 3.4 4.8 + - + +
204C HIS* 2.8 65.0 + - + +
197D ILE* 4.3 20.0 - - + -
200D LEU* 4.7 13.0 - - + -
201D ARG* 4.1 46.9 - - + +
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Residues in contact with ARG 201 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197C ILE* 3.0 30.1 + - - +
198C ARG* 3.7 10.5 - - + +
199C PHE 3.3 0.2 - - - -
200C LEU* 1.3 76.2 - - - +
202C LYS* 1.3 57.0 + - + +
204C HIS* 3.8 6.8 - - + +
205C GLU* 2.9 33.6 + - - +
196D GLU* 3.7 21.6 + - - -
200D LEU* 3.7 34.6 - - + +
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Residues in contact with LYS 202 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198C ARG* 3.2 63.2 + - + +
199C PHE* 3.2 12.2 + - + +
201C ARG* 1.3 75.9 - - - +
203C ILE* 1.3 58.4 + - - +
205C GLU* 3.5 7.5 + - - +
206C GLU* 3.0 34.5 + - + +
115E VAL* 4.4 21.3 - - + -
119E GLU* 4.7 12.3 + - - -
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Residues in contact with ILE 203 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
199C PHE* 2.9 45.4 + - + +
200C LEU* 3.8 5.8 - - + +
202C LYS* 1.3 75.9 - - - +
204C HIS* 1.3 73.8 + - + +
206C GLU* 3.4 4.7 + - - +
207C GLU* 3.0 37.1 + - - +
112E LEU* 3.9 13.3 - - + +
115E VAL* 3.2 27.4 - - + -
116E TYR* 3.5 47.3 - - + +
117F GLN* 5.7 1.1 - - - +
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Residues in contact with HIS 204 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
200C LEU* 2.8 64.1 + - + +
201C ARG* 3.8 7.2 - - - +
203C ILE* 1.3 83.9 - - + +
205C GLU* 1.3 59.4 + - - +
207C GLU* 3.3 2.6 + - - +
208C VAL* 3.0 35.8 + - - +
200D LEU* 4.3 17.2 + - + -
201D ARG* 4.8 5.0 - - + +
204D HIS* 3.2 57.7 + + + +
----------------------------------------------------------
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Residues in contact with GLU 205 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201C ARG* 2.9 20.0 + - - +
202C LYS* 3.7 7.2 - - - +
204C HIS* 1.3 76.8 - - - +
206C GLU* 1.3 61.3 + - + +
208C VAL* 3.6 9.0 + - + +
209C ARG* 3.1 56.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 206 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202C LYS* 3.0 20.6 + - + +
203C ILE* 3.7 6.1 - - - +
204C HIS 3.2 0.2 - - - -
205C GLU* 1.3 80.0 - - + +
207C GLU* 1.3 63.5 + - - +
209C ARG* 3.3 37.2 + - - +
210C GLU* 3.3 24.9 + - - +
111E LYS* 2.9 51.8 + - + +
112E LEU* 4.2 19.5 + - + -
115E VAL* 4.2 12.6 - - + -
----------------------------------------------------------
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Residues in contact with GLU 207 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
203C ILE* 3.0 27.0 + - - +
204C HIS* 3.3 6.0 + - - +
206C GLU* 1.3 76.0 - - - +
208C VAL* 1.3 61.3 + - - +
210C GLU* 3.4 24.3 + - - +
211C LEU* 3.5 18.5 - - + +
204D HIS* 3.7 19.0 + - + -
208D VAL* 3.8 25.2 - - + +
112E LEU* 4.2 15.4 - - + +
116E TYR* 5.5 1.6 + - - -
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Residues in contact with VAL 208 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204C HIS 3.0 19.3 + - - +
205C GLU* 3.9 8.5 - - + +
207C GLU* 1.3 76.3 - - - +
209C ARG* 1.3 64.2 + - - +
211C LEU* 3.2 21.9 + - + +
204D HIS* 4.5 11.7 - - + +
207D GLU* 3.4 38.8 - - + +
208D VAL* 5.1 5.4 - - + -
211D LEU* 4.1 17.7 - - + +
----------------------------------------------------------
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Residues in contact with ARG 209 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
205C GLU* 3.1 46.9 + - - +
206C GLU* 3.3 39.7 + - - +
208C VAL* 1.3 77.4 - - - +
210C GLU* 1.3 61.5 + - + +
211C LEU 3.2 5.4 + - - +
111E LYS* 5.0 6.3 - - - +
----------------------------------------------------------
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Residues in contact with GLU 210 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206C GLU* 3.3 13.0 + - - +
207C GLU* 3.5 16.7 - - + +
208C VAL 3.2 0.8 - - - -
209C ARG* 1.3 78.7 - - + +
211C LEU* 1.3 68.1 + - + +
110E THR 5.1 5.9 + - - -
111E LYS* 5.5 0.7 + - - +
112E LEU* 3.7 37.1 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il