Contacts of the helix formed by residues 768 - 804 (chain J) in PDB entry 6ASX
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 768 (chain J).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
618I GLN* 3.1 29.3 + - - +
620I ASN* 3.4 24.8 + - - +
635I THR* 5.3 2.6 + - - +
1187I PHE* 4.7 5.8 - - - -
767J LEU* 1.3 77.2 - - - +
769J VAL* 1.3 66.0 + - - +
770J LEU* 4.5 1.0 - - - +
771J GLN* 3.0 44.4 + - - +
772J TYR* 3.6 16.8 + - - +
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Residues in contact with VAL 769 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555I TYR* 3.3 39.0 - - + +
618I GLN* 3.6 9.7 - - + +
619I ALA* 4.7 13.7 - - + -
620I ASN* 5.0 4.3 - - - +
657I THR* 4.3 14.6 - - - +
660I VAL* 3.8 26.2 - - + +
1187I PHE* 3.7 24.0 - - + -
768J ASN* 1.3 78.9 - - - +
770J LEU* 1.3 61.6 + - + +
772J TYR* 3.3 5.4 + - - +
773J PHE* 3.0 25.6 + - - +
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Residues in contact with LEU 770 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555I TYR* 4.5 20.0 - - + +
618I GLN* 3.6 38.9 - - + +
635I THR* 5.7 4.5 - - - -
636I CYS* 4.3 16.4 - - - +
637I ARG* 4.6 19.7 - - + +
642I SER* 3.7 29.8 - - - -
768J ASN* 5.1 0.9 - - - +
769J VAL* 1.3 77.8 - - + +
771J GLN* 1.3 62.8 + - + +
773J PHE* 3.2 9.1 + - + +
774J ILE* 2.9 40.7 + - + +
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Residues in contact with GLN 771 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
758J PRO 4.7 5.1 + - - +
759J ILE* 3.7 43.3 - - + +
760J THR* 4.0 22.6 + - - +
761J ALA* 3.8 20.5 - - - +
767J LEU* 4.2 10.0 - - + +
768J ASN* 3.0 36.0 + - - +
769J VAL 3.4 0.4 - - - -
770J LEU* 1.3 78.2 - - + +
772J TYR* 1.3 62.5 + - - +
774J ILE* 3.4 4.6 + - + +
775J SER* 3.0 22.2 + - - -
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Residues in contact with TYR 772 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
561I ILE* 3.7 34.1 - - + +
660I VAL* 6.4 2.0 - - + -
661I VAL* 6.0 0.9 - - + -
671I LEU* 4.1 15.8 - - + +
672I GLU* 5.1 2.0 - - - -
674I ASP 3.3 25.5 + - - -
676I ALA* 3.6 18.4 - - + -
679I ALA* 3.4 28.1 - - - +
1187I PHE* 4.0 26.2 - + + -
763J PHE* 5.9 0.2 - + - -
767J LEU* 4.2 22.6 - - + +
768J ASN 3.6 17.4 + - - +
769J VAL 3.3 4.2 + - - +
770J LEU 3.2 0.2 - - - -
771J GLN* 1.3 79.3 - - - +
773J PHE* 1.3 54.2 + - - +
775J SER* 3.2 9.2 + - - -
776J THR* 2.6 38.9 + - - -
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Residues in contact with PHE 773 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
550I VAL* 4.4 12.1 - - + +
551I HIS 4.4 12.3 - - - -
552I PRO* 4.3 15.3 - - + -
554I HIS 4.6 1.8 - - - -
555I TYR* 4.1 51.1 - + + -
560I PRO* 3.6 33.7 - - + -
660I VAL* 4.3 6.5 - - + -
769J VAL 3.0 17.3 + - - +
770J LEU* 3.2 10.7 + - + +
772J TYR* 1.3 79.1 - - - +
774J ILE* 1.3 61.9 + - + +
776J THR* 3.0 21.8 + - - -
777J HIS* 3.2 33.8 + + - -
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Residues in contact with ILE 774 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
642I SER* 4.2 21.3 - - - +
747J MET* 3.8 28.1 - - + +
748J ALA 4.4 2.9 - - - +
755J ILE* 3.7 38.8 - - + -
757J THR 5.0 5.4 - - - +
759J ILE* 4.1 17.5 - - + -
770J LEU* 2.9 25.8 + - + +
771J GLN* 3.8 5.2 - - + +
773J PHE* 1.3 78.8 - - + +
775J SER* 1.3 62.0 + - - +
777J HIS* 3.4 27.8 - - + +
778J GLY 4.0 1.6 + - - -
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Residues in contact with SER 775 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
675I ASP* 4.8 4.7 + - - -
676I ALA* 4.7 9.8 + - - +
744J ARG* 3.6 32.2 + - - -
747J MET* 4.4 17.3 - - - +
759J ILE* 6.1 0.7 - - - -
767J LEU* 5.5 3.1 - - - -
771J GLN 3.0 14.4 + - - -
772J TYR* 3.4 16.6 - - - -
774J ILE* 1.3 76.1 - - - +
776J THR* 1.3 63.0 + - - +
777J HIS 3.3 0.5 + - - -
778J GLY* 3.3 3.8 + - - -
779J ALA* 3.2 20.5 + - - +
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Residues in contact with THR 776 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
550I VAL* 4.2 6.4 - - + +
560I PRO* 3.6 41.0 - - + +
561I ILE* 3.7 12.3 - - + +
676I ALA* 4.3 8.3 - - + +
772J TYR* 2.6 35.6 + - - -
773J PHE* 3.0 12.3 + - - -
775J SER* 1.3 73.6 - - - +
777J HIS* 1.3 66.0 + - - +
779J ALA* 3.3 6.2 + - + +
780J ARG* 3.0 27.2 + - + +
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Residues in contact with HIS 777 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
549I ASP* 4.2 5.8 - - - +
550I VAL* 3.3 44.1 + - + +
551I HIS 4.5 0.2 - - - -
552I PRO* 4.1 22.4 - - + +
748J ALA 4.3 13.5 - - - +
749J LYS* 4.7 4.4 - - + +
750J PRO* 3.3 28.8 - - + +
755J ILE* 5.5 2.7 - - + -
773J PHE* 3.2 37.5 + + - -
774J ILE* 3.4 23.9 - - + +
776J THR* 1.3 77.1 - - - +
778J GLY* 1.3 62.0 + - - +
780J ARG* 3.4 2.3 + - - +
781J LYS* 3.1 21.9 + - - +
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Residues in contact with GLY 778 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
747J MET* 5.1 11.0 - - - +
748J ALA* 5.4 11.0 + - - +
774J ILE 4.0 2.8 + - - -
775J SER 3.3 6.2 + - - -
777J HIS* 1.3 79.9 - - - +
779J ALA* 1.3 62.7 + - - +
781J LYS* 3.4 13.0 + - - +
782J GLY* 3.0 20.4 + - - -
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Residues in contact with ALA 779 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
675I ASP* 5.6 1.1 - - - +
676I ALA* 3.7 27.6 - - + -
677I ASN* 3.7 25.0 + - - +
775J SER* 3.2 11.2 + - - +
776J THR* 3.7 7.9 - - + +
777J HIS 3.3 0.2 - - - -
778J GLY* 1.3 77.7 - - - +
780J ARG* 1.3 62.5 + - - +
782J GLY* 3.3 2.6 + - - -
783J LEU* 3.1 28.8 + - + +
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Residues in contact with ARG 780 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
548I ARG 3.4 24.0 + - - +
549I ASP* 4.8 3.3 - - - +
550I VAL* 4.3 31.4 - - + +
554I HIS* 5.8 3.4 + - - -
558I VAL* 5.6 1.4 - - - +
559I CYS 3.9 6.9 + - - -
560I PRO* 2.4 39.9 + - - +
562I GLU 4.4 1.2 + - - +
563I THR* 3.8 27.0 - - + +
569I ILE* 4.2 17.3 - - + -
570I GLY* 4.2 6.3 - - - -
573I ASN* 3.2 25.7 + - - +
680I LEU* 5.6 4.1 - - + +
776J THR* 3.0 17.5 + - + +
777J HIS 4.2 2.9 - - - +
779J ALA* 1.3 72.6 - - - +
781J LYS* 1.3 65.0 + - - +
783J LEU* 3.9 6.9 - - + +
784J ALA* 3.0 24.2 + - + +
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Residues in contact with LYS 781 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
549I ASP* 4.8 12.4 + - - +
748J ALA* 5.0 15.7 - - + +
749J LYS 5.1 9.0 + - - +
750J PRO* 6.1 2.2 - - + -
752J GLY* 5.2 8.5 - - - -
777J HIS 3.1 14.5 + - - +
778J GLY* 3.4 14.1 - - - +
780J ARG* 1.3 77.5 - - - +
782J GLY* 1.3 62.4 + - - +
784J ALA* 3.4 3.7 + - - +
785J ASP* 3.1 39.7 + - - +
933J ARG* 3.4 42.6 - - - +
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Residues in contact with GLY 782 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
778J GLY 3.0 14.8 + - - -
779J ALA* 3.3 2.7 + - - -
781J LYS* 1.3 76.5 - - - +
783J LEU* 1.3 63.5 + - - +
785J ASP* 3.3 9.1 + - - +
786J THR* 3.1 29.6 + - - +
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Residues in contact with LEU 783 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
565I GLU* 4.4 20.0 - - + +
569I ILE* 3.5 21.0 - - + +
677I ASN* 3.6 28.7 - - + +
680I LEU* 3.8 29.6 - - + -
779J ALA* 3.1 17.7 + - + +
780J ARG* 4.0 6.7 - - + +
782J GLY* 1.3 78.2 - - - +
784J ALA* 1.3 62.3 + - - +
786J THR* 3.0 26.6 + - + +
787J ALA* 3.0 12.8 + - - +
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Residues in contact with ALA 784 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545I PHE* 3.6 24.8 - - + -
548I ARG* 4.5 27.7 - - + +
569I ILE* 4.1 14.3 - - + +
780J ARG* 3.0 19.1 + - + +
781J LYS* 3.9 4.5 - - - +
783J LEU* 1.3 74.6 - - - +
785J ASP* 1.3 63.4 + - - +
787J ALA* 3.4 3.5 + - - +
788J LEU* 3.1 19.6 + - - +
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Residues in contact with ASP 785 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545I PHE* 3.4 10.8 - - - -
781J LYS* 3.1 32.3 + - - +
782J GLY* 3.5 11.7 - - - +
783J LEU 3.2 0.2 - - - -
784J ALA* 1.3 76.8 - - - +
786J THR* 1.3 58.4 + - + +
788J LEU* 3.5 1.0 + - - +
789J LYS* 2.9 44.2 + - - +
931J THR* 5.2 3.3 + - - -
932J MET* 4.4 7.6 - - + +
933J ARG* 3.3 42.4 + - - +
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Residues in contact with THR 786 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
782J GLY 3.1 13.6 + - - +
783J LEU* 3.0 20.0 + - + +
785J ASP* 1.3 77.3 - - + +
787J ALA* 1.3 66.9 + - - +
789J LYS* 3.1 27.1 + - + +
790J THR* 3.2 19.6 + - - -
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Residues in contact with ALA 787 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16B A 5.9 1.4 - - - +
566I GLY* 3.3 31.0 - - - +
567I PRO* 5.3 4.9 - - + +
569I ILE* 3.8 10.3 - - + -
783J LEU 3.0 13.6 + - - +
784J ALA* 3.8 5.2 - - - +
785J ASP 3.3 0.4 - - - -
786J THR* 1.3 82.4 + - - +
788J LEU* 1.3 58.1 + - - +
790J THR* 4.3 9.7 + - - -
791J ALA* 4.7 3.6 + - - +
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Residues in contact with LEU 788 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
542I ARG 6.0 1.3 - - - +
544I GLY* 5.4 2.9 - - - -
545I PHE* 3.6 33.2 - - + -
548I ARG* 4.3 22.2 - - - +
784J ALA 3.1 9.7 + - - +
787J ALA* 1.3 74.7 - - - +
789J LYS* 1.3 64.8 + - - +
790J THR 3.2 2.8 + - - -
791J ALA* 3.3 9.6 + - + +
792J ASN* 3.3 40.0 + - - +
932J MET* 3.7 14.1 - - - -
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Residues in contact with LYS 789 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
785J ASP* 2.9 29.3 + - - +
786J THR* 3.1 16.1 + - + +
788J LEU* 1.3 78.2 - - - +
790J THR* 1.3 62.6 + - - +
792J ASN* 3.4 1.7 + - - +
793J SER* 3.0 23.3 + - - -
927J GLY 3.8 11.7 - - - +
928J THR* 3.3 34.3 - - + +
929J GLN 5.5 0.2 - - - -
930J LEU 2.3 38.8 + - - +
931J THR* 3.4 16.1 - - - +
932J MET* 3.6 27.3 - - + +
1138J LEU* 4.4 3.0 - - + +
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Residues in contact with THR 790 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16B A 3.8 42.7 + - + +
786J THR 3.2 14.6 + - - -
787J ALA* 4.5 6.9 - - - -
788J LEU 3.2 0.6 - - - -
789J LYS* 1.3 75.1 - - - +
791J ALA* 1.3 62.6 + - - +
793J SER* 3.3 6.7 + - - -
794J GLY* 3.1 20.1 + - - -
928J THR* 5.2 12.3 - - + +
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Residues in contact with ALA 791 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15B C 4.4 18.5 - - + +
16B A 3.7 31.9 - - + +
787J ALA 4.7 3.4 + - - +
788J LEU* 3.3 14.3 + - + +
790J THR* 1.3 78.3 - - - +
792J ASN* 1.3 63.0 + - - +
794J GLY* 3.4 1.6 + - - -
795J TYR* 3.1 24.1 + - - +
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Residues in contact with ASN 792 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
788J LEU* 3.3 34.1 + - - +
789J LYS 3.4 3.6 + - - +
790J THR 3.4 0.2 - - - -
791J ALA* 1.3 78.5 - - - +
793J SER* 1.3 61.6 + - - +
795J TYR* 3.5 9.5 + - - +
796J LEU* 3.1 25.3 + - - +
932J MET* 3.5 15.0 - - + +
1138J LEU* 3.7 22.0 - - + +
1139J PRO* 5.8 5.0 - - - +
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Residues in contact with SER 793 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429J LEU* 4.8 6.4 - - - +
789J LYS 3.0 18.1 + - - -
790J THR* 3.6 6.7 - - - -
791J ALA 3.3 0.2 - - - -
792J ASN* 1.3 76.3 - - - +
794J GLY* 1.3 61.3 + - - +
796J LEU* 3.4 4.5 + - - +
797J THR* 3.0 27.4 + - - +
924J GLY 3.8 16.6 + - - +
927J GLY* 4.0 20.6 - - - -
928J THR* 3.9 14.6 + - - -
1138J LEU* 4.0 7.7 - - - +
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Residues in contact with GLY 794 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16B A 4.4 19.3 - - - -
1273I MET* 6.1 3.8 - - - -
790J THR 3.1 14.4 + - - -
791J ALA 3.4 2.6 + - - -
792J ASN 3.4 0.2 - - - -
793J SER* 1.3 77.2 + - - +
795J TYR* 1.3 59.1 + - - +
797J THR* 2.6 23.1 + - - -
798J ARG* 3.0 12.3 + - - +
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Residues in contact with TYR 795 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14B C 5.2 4.2 + - - -
15B C 3.8 42.6 - - - -
16B A 4.5 4.8 - - - -
791J ALA 3.1 16.8 + - - +
792J ASN* 4.0 9.4 - - - +
794J GLY* 1.3 76.1 - - - +
796J LEU* 1.3 64.1 + - + +
798J ARG* 3.4 15.5 + - - +
799J ARG* 3.1 70.9 + - + +
1310J THR* 5.1 0.3 + - - -
1325J PHE* 6.1 0.7 - + - -
1326J GLN* 2.4 35.9 + - + -
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Residues in contact with LEU 796 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
792J ASN 3.1 17.9 + - - +
793J SER* 3.8 5.4 - - - +
795J TYR* 1.3 76.4 - - - +
797J THR* 1.3 64.1 + - + +
799J ARG* 3.3 29.5 + - - +
800J LEU* 3.0 52.4 + - + +
923J ILE* 6.0 1.8 - - + -
924J GLY* 5.3 9.2 - - - -
927J GLY* 6.3 0.9 - - - -
1138J LEU* 3.9 26.9 - - + +
1141J VAL* 4.1 21.1 - - + +
1142J ALA* 4.6 14.8 - - + +
1145J PHE* 5.5 1.8 - - + -
1241J TYR* 5.1 4.5 - - - +
1309J ILE* 4.8 3.8 - - + -
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Residues in contact with THR 797 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1273I MET* 5.4 5.4 - - - -
1276I TRP* 4.7 11.6 - - - -
429J LEU* 5.8 9.2 - - + +
793J SER* 3.0 14.0 + - - +
794J GLY* 2.6 26.4 + - - -
796J LEU* 1.3 75.3 - - - +
798J ARG* 1.3 56.6 + - - +
800J LEU* 3.9 4.5 - - - +
801J VAL* 3.0 37.2 + - - +
920J ALA 5.0 5.2 - - - +
921J GLN* 5.6 3.8 - - - +
924J GLY* 3.3 40.2 - - - +
925J GLU* 4.4 1.3 - - - +
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Residues in contact with ARG 798 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15B C 5.1 2.3 + - - -
1272I GLU* 2.8 41.5 + - - -
1276I TRP* 3.9 19.3 - - + -
339J ARG* 3.2 49.9 - - - +
343J LEU* 5.3 0.2 - - - +
794J GLY 3.0 14.0 + - - +
795J TYR* 3.6 22.8 - - - +
796J LEU 3.2 0.2 - - - -
797J THR* 1.3 77.7 + - - +
799J ARG* 1.3 63.9 + - + +
801J VAL* 3.4 2.6 - - - +
802J ASP* 3.0 37.9 + - - +
1324J SER 2.9 28.9 + - - -
1325J PHE* 4.1 15.7 - - + +
1326J GLN* 5.9 2.2 - - - +
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Residues in contact with ARG 799 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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795J TYR* 3.1 65.6 + - + +
796J LEU* 3.7 26.5 - - - +
798J ARG* 1.3 76.0 - - + +
800J LEU* 1.3 58.7 + - - +
802J ASP* 3.4 1.6 + - - +
803J VAL* 3.0 29.7 + - - +
1142J ALA* 4.2 18.2 + - - +
1146J GLU* 3.6 27.8 + - - +
1148J ARG* 5.8 3.2 - - - +
1309J ILE* 4.2 20.9 - - + +
1310J THR* 4.4 14.0 - - - +
1325J PHE* 3.8 29.9 - - + -
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Residues in contact with LEU 800 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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796J LEU* 3.0 44.5 + - + +
797J THR* 4.0 3.4 - - - +
799J ARG* 1.3 77.5 - - - +
801J VAL* 1.3 57.4 + - - +
803J VAL* 3.3 9.0 + - - +
804J ALA* 3.0 29.3 + - - +
920J ALA* 3.7 20.5 - - + +
923J ILE* 3.7 40.8 - - + -
924J GLY* 4.9 2.9 - - - +
1145J PHE* 4.8 11.0 - - + -
1256J ILE* 4.4 21.2 - - + +
1309J ILE* 3.7 23.3 - - + -
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Residues in contact with VAL 801 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1276I TRP* 3.5 49.6 - - + +
797J THR* 3.0 26.1 + - - +
798J ARG 3.4 6.7 - - - +
800J LEU* 1.3 76.1 - - - +
802J ASP* 1.3 62.5 + - - +
804J ALA* 3.9 5.8 - - - +
805J GLN* 3.1 33.9 + - - +
917J VAL* 4.6 10.3 - - + +
920J ALA* 3.6 22.2 - - + -
921J GLN* 4.5 16.4 - - + -
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Residues in contact with ASP 802 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1272I GLU* 4.4 3.7 - - - +
1276I TRP* 4.6 5.9 + - - -
798J ARG* 3.0 42.8 + - - +
799J ARG 3.8 0.2 - - - -
801J VAL* 1.3 82.6 - - - +
803J VAL* 1.3 61.2 + - - +
804J ALA 4.0 4.5 - - - +
805J GLN* 3.4 20.1 + - - +
806J ASP* 5.5 1.4 - - - +
1313J SER* 3.8 13.8 - - - -
1321J SER* 5.8 3.6 - - - -
1325J PHE* 3.6 30.6 - - + -
1348J LYS* 3.7 26.1 + - - +
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Residues in contact with VAL 803 (chain J).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
799J ARG 3.0 15.4 + - - +
800J LEU* 3.3 17.0 - - - +
802J ASP* 1.3 75.0 - - - +
804J ALA* 1.3 64.8 + - - +
806J ASP* 4.7 2.6 - - - +
1256J ILE* 4.8 12.6 - - + +
1259J GLN* 3.2 41.7 + - + +
1262J ARG* 4.6 1.6 + - - +
1309J ILE* 3.7 49.6 - - + +
1312J ALA* 4.1 20.8 - - + +
1313J SER* 4.2 3.8 - - - +
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Residues in contact with ALA 804 (chain J).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
800J LEU 3.0 17.2 + - - +
801J VAL* 3.9 5.5 - - - +
802J ASP 3.4 4.7 - - - +
803J VAL* 1.3 83.3 - - - +
805J GLN* 1.3 73.1 - - + +
806J ASP* 3.1 14.5 + - - +
807J LEU* 6.1 0.2 - - + -
916J GLY* 3.6 28.7 - - - +
1256J ILE* 4.0 16.6 - - + -
1259J GLN* 4.4 12.1 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il