Contacts of the helix formed by residues 1135 - 1161 (chain G) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with HIS1135 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1130G ASN 4.2 7.4 - - - -
1131G THR* 2.9 11.7 + - - +
1134G GLN* 1.3 98.5 + - + +
1136G ILE* 1.3 66.5 + - - +
1137G PRO 3.5 0.9 - - - -
1138G SER* 3.5 3.8 + - - -
1139G THR* 2.7 33.3 + - - +
1304G ASP* 5.8 0.2 - - - +
1308G GLN* 3.4 28.5 - - - +
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Residues in contact with ILE1136 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1131G THR* 3.2 12.5 + - + +
1132G ILE* 3.8 25.4 - - + +
1135G HIS* 1.3 75.8 - - - +
1137G PRO* 1.4 66.9 - - + +
1139G THR* 3.8 0.3 - - - -
1140G LEU* 2.9 51.3 + - + +
1305G MET* 3.7 16.1 - - + +
1308G GLN* 3.4 36.8 - - - +
1309G LEU* 4.1 7.6 - - + -
1312G VAL* 3.8 22.2 - - + -
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Residues in contact with PRO1137 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1086G VAL* 4.6 25.0 - - + +
1087G GLU* 5.5 3.4 - - - -
1090G GLY* 4.5 17.7 - - - -
1132G ILE 3.3 22.0 - - - +
1133G ASP* 5.2 3.1 - - - +
1134G GLN 4.3 4.7 - - - +
1135G HIS 3.7 6.7 - - - +
1136G ILE* 1.4 91.9 - - + +
1138G SER* 1.3 59.4 + - - +
1140G LEU* 3.4 6.4 + - + +
1141G GLU* 3.0 28.5 + - - +
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Residues in contact with SER1138 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540G THR* 5.5 11.7 - - - -
544G ILE* 5.4 13.4 - - - +
1134G GLN 4.2 10.0 + - - -
1135G HIS* 3.5 9.2 + - - -
1137G PRO* 1.3 81.2 - - - +
1139G THR* 1.3 62.8 + - - +
1141G GLU* 3.3 10.9 + - - +
1142G CYS* 2.9 29.7 + - - +
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Residues in contact with THR1139 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1135G HIS* 2.7 26.3 + - - +
1137G PRO 3.2 0.4 - - - -
1138G SER* 1.3 79.6 + - - +
1140G LEU* 1.3 61.1 + - - +
1142G CYS* 3.2 9.1 - - - -
1143G LEU* 2.9 30.9 + - - +
1301G ASN* 3.9 25.6 - - + +
1304G ASP* 3.7 21.8 + - - +
1305G MET* 3.7 20.1 - - + +
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Residues in contact with LEU1140 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1136G ILE* 2.9 39.7 + - + +
1137G PRO* 3.7 6.1 - - + +
1139G THR* 1.3 76.0 - - - +
1141G GLU* 1.3 55.5 + - - +
1143G LEU* 3.8 12.1 - - + +
1144G SER* 2.9 31.5 + - - -
1305G MET* 3.8 25.4 - - + -
1309G LEU* 5.4 10.5 - - + -
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Residues in contact with GLU1141 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541G SER* 6.0 0.2 - - - -
544G ILE* 3.1 42.7 - - + +
548G THR* 5.7 0.5 - - - +
1082G THR* 4.0 8.1 - - - +
1083G SER* 3.3 32.2 + - - +
1086G VAL* 4.0 15.8 - - + +
1137G PRO 3.0 14.0 + - - +
1138G SER* 3.3 12.1 + - - +
1140G LEU* 1.3 76.9 - - - +
1142G CYS* 1.3 58.1 + - - +
1144G SER* 2.6 22.4 + - - +
1145G ARG* 2.9 19.4 + - + +
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Residues in contact with CYS1142 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544G ILE* 6.0 2.2 - - + -
1138G SER 2.9 11.3 + - - +
1139G THR* 3.2 24.7 - - - -
1141G GLU* 1.3 76.5 - - - +
1143G LEU* 1.3 62.9 + - - +
1145G ARG* 3.4 32.7 + - - +
1146G SER* 2.9 35.4 + - - +
1301G ASN* 3.2 29.2 - - - +
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Residues in contact with LEU1143 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1139G THR 2.9 19.4 + - - +
1140G LEU* 3.8 13.0 - - + +
1142G CYS* 1.3 77.3 - - - +
1144G SER* 1.3 52.7 + - - +
1146G SER* 3.4 1.5 + - - -
1147G THR* 2.3 44.9 + - - +
1298G MET* 3.4 35.2 - - + +
1301G ASN* 3.7 31.4 - - + +
1302G LEU* 3.9 19.3 - - + +
1305G MET* 4.5 12.6 - - + -
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Residues in contact with SER1144 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1020G GLN* 5.9 3.4 - - - +
1140G LEU 2.9 15.3 + - - -
1141G GLU* 2.6 26.9 + - - +
1143G LEU* 1.3 76.0 - - - +
1145G ARG* 1.3 56.7 + - - +
1147G THR* 3.3 6.8 + - - -
1148G LEU* 2.9 42.1 + - - +
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Residues in contact with ARG1145 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544G ILE* 3.8 32.7 - - - +
547G ASN* 5.8 6.2 + - - +
548G THR* 3.8 24.3 - - - +
1141G GLU* 2.9 22.9 + - + +
1142G CYS* 3.4 39.4 + - - +
1144G SER* 1.3 77.6 + - - +
1146G SER* 1.3 61.2 + - - +
1148G LEU* 3.3 6.6 + - - +
1149G LEU* 2.9 51.3 + - + +
1297G TRP* 5.2 12.5 - - - -
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Residues in contact with SER1146 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1142G CYS* 2.9 20.8 + - - +
1143G LEU* 3.9 2.2 - - - -
1145G ARG* 1.3 77.1 + - - +
1147G THR* 1.3 61.0 + - - +
1149G LEU* 3.7 10.6 - - - +
1150G CYS* 3.0 30.0 + - - +
1294G TYR* 4.4 6.7 - - - +
1297G TRP* 3.4 39.8 - - - +
1298G MET* 3.7 22.1 - - - +
1301G ASN* 4.6 1.0 + - - -
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Residues in contact with THR1147 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1143G LEU* 2.3 39.1 + - - +
1144G SER* 3.4 9.0 - - - -
1145G ARG 3.2 0.2 - - - -
1146G SER* 1.3 76.7 - - - +
1148G LEU* 1.3 62.6 + - + +
1150G CYS* 3.3 3.1 + - - +
1151G VAL* 3.0 40.9 + - + +
1298G MET* 3.6 17.5 - - - +
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Residues in contact with LEU1148 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1020G GLN* 4.0 36.6 - - + +
1021G LEU* 4.6 5.4 - - + +
1024G HIS* 4.4 16.4 - - + -
1144G SER* 2.9 27.0 + - - +
1145G ARG* 4.0 4.9 - - - +
1147G THR* 1.3 82.0 - - + +
1149G LEU* 1.3 58.6 + - + +
1151G VAL* 3.7 14.8 - - + +
1152G SER* 2.7 33.4 + - - -
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Residues in contact with LEU1149 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024G HIS* 6.2 4.3 - - + -
1027G LEU* 6.0 6.5 - - + -
1145G ARG* 2.9 44.1 + - + +
1146G SER* 3.7 7.6 - - - +
1147G THR 3.2 0.2 - - - -
1148G LEU* 1.3 75.8 - - + +
1150G CYS* 1.3 59.2 + - - +
1152G SER* 3.3 10.1 + - - +
1153G ALA* 2.9 27.7 + - - +
1287G TYR* 6.5 0.7 - - + -
1294G TYR* 3.5 48.0 - - + +
1297G TRP* 5.5 3.6 - - + -
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Residues in contact with CYS1150 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1146G SER 3.0 17.2 + - - +
1147G THR 3.3 2.9 + - - +
1149G LEU* 1.3 73.4 - - - +
1151G VAL* 1.3 62.9 + - + +
1153G ALA* 3.7 1.3 - - - +
1154G LEU* 2.9 43.1 + - - +
1291G VAL* 3.8 25.4 - - - -
1294G TYR* 3.9 13.8 - - + -
1295G LEU* 4.5 7.9 - - - -
1298G MET* 3.7 27.6 - - + -
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Residues in contact with VAL1151 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1147G THR* 3.0 29.8 + - + +
1148G LEU* 3.7 16.6 - - + +
1150G CYS* 1.3 78.2 - - + +
1152G SER* 1.3 55.6 + - - +
1154G LEU* 3.8 7.0 - - + +
1155G THR* 2.5 45.4 + - - +
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Residues in contact with SER1152 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024G HIS* 4.4 19.4 + - - +
1028G VAL* 5.2 12.4 - - - +
1148G LEU 2.7 23.1 + - - -
1149G LEU* 3.5 12.5 - - - +
1151G VAL* 1.3 77.9 - - - +
1153G ALA* 1.3 56.8 + - - +
1155G THR* 3.3 5.8 + - - -
1156G VAL* 2.9 36.1 + - - +
1287G TYR* 4.7 9.2 - - - -
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Residues in contact with ALA1153 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1149G LEU 2.9 17.2 + - - +
1150G CYS* 3.7 7.6 - - - +
1151G VAL 3.3 0.2 - - - -
1152G SER* 1.3 75.5 - - - +
1154G LEU* 1.3 58.7 + - + +
1156G VAL* 3.4 1.9 + - - +
1157G ILE* 3.0 38.1 + - + +
1287G TYR* 3.7 40.5 - - + +
1291G VAL* 4.8 8.5 - - + -
1294G TYR* 4.6 10.1 - - + -
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Residues in contact with LEU1154 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1150G CYS* 2.9 36.4 + - - +
1151G VAL* 3.9 6.3 - - + +
1153G ALA* 1.3 76.0 - - - +
1155G THR* 1.3 57.5 + - - +
1157G ILE* 4.0 7.0 - - + +
1158G SER* 2.9 32.8 + - - -
1164G PHE* 4.7 9.0 - - + -
1168G LEU* 3.8 41.9 - - + +
1259G VAL* 6.3 2.9 - - + -
1291G VAL* 4.9 12.3 - - + -
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Residues in contact with THR1155 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1151G VAL* 2.5 33.5 + - - +
1152G SER* 3.6 7.2 - - - -
1154G LEU* 1.3 78.2 - - - +
1156G VAL* 1.3 61.0 + - + +
1158G SER* 2.6 20.6 + - - +
1159G TYR* 2.9 19.2 + - + +
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Residues in contact with VAL1156 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1028G VAL* 5.1 16.4 - - + +
1031G ASP* 6.5 0.4 - - + -
1152G SER* 2.9 22.3 + - - +
1155G THR* 1.3 78.8 - - + +
1157G ILE* 1.3 60.1 + - - +
1159G TYR* 3.1 10.5 + - + +
1160G VAL* 2.9 36.2 + - + +
1283G LEU* 4.4 27.6 - - + +
1284G GLY* 4.9 0.9 - - - +
1287G TYR* 3.6 33.2 - - + -
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Residues in contact with ILE1157 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1153G ALA* 3.0 23.5 + - + +
1154G LEU* 4.0 7.4 - - + +
1156G VAL* 1.3 76.3 - - - +
1158G SER* 1.3 55.5 + - - +
1160G VAL* 3.4 5.0 + - - +
1161G THR* 2.7 42.6 + - - +
1164G PHE* 3.6 35.9 - - + -
1259G VAL* 5.8 3.6 - - + +
1263G ALA* 4.4 11.7 - - + -
1284G GLY* 3.4 35.2 - - - +
1287G TYR* 4.0 7.4 - - + +
1288G ALA* 3.6 25.6 - - + +
1291G VAL* 5.8 2.9 - - + -
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Residues in contact with SER1158 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1154G LEU 2.9 16.1 + - - -
1155G THR* 2.6 27.0 + - - +
1157G ILE* 1.3 78.9 - - - +
1159G TYR* 1.3 59.6 + - - +
1161G THR 3.1 22.8 - - - +
1162G PRO* 3.3 10.7 - - - +
1164G PHE* 5.1 2.0 - - - -
1165G LEU* 3.7 32.9 - - - +
1168G LEU* 5.7 0.2 - - - -
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Residues in contact with TYR1159 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1155G THR* 2.9 20.3 + - + +
1156G VAL* 3.1 12.3 + - + +
1158G SER* 1.3 77.4 + - - +
1160G VAL* 1.3 66.1 + - + +
1162G PRO* 4.9 2.9 - - - +
1280G LEU* 4.4 26.0 - - + +
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Residues in contact with VAL1160 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156G VAL* 2.9 29.2 + - + +
1157G ILE* 3.9 4.5 - - - +
1159G TYR* 1.3 81.5 - - + +
1161G THR* 1.3 71.7 + - + +
1162G PRO* 3.3 10.6 - - - +
1267G SER* 4.0 9.9 - - - +
1270G ASN* 5.3 1.9 + - - +
1280G LEU* 3.3 66.4 - - + +
1281G VAL* 4.3 3.4 - - + +
1283G LEU* 5.4 0.4 - - + -
1284G GLY* 4.9 4.9 - - - +
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Residues in contact with THR1161 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157G ILE* 2.7 30.1 + - - +
1158G SER* 3.1 11.0 - - - +
1160G VAL* 1.3 76.9 - - + +
1162G PRO* 1.3 69.3 - - - +
1163G VAL 3.4 1.1 - - - -
1164G PHE* 3.2 27.0 - - - +
1263G ALA* 4.3 4.2 - - + +
1266G THR* 3.8 22.2 - - + -
1267G SER* 3.0 44.9 - - - +
1270G ASN* 4.6 3.1 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il