Contacts of the helix formed by residues 1163 - 1210 (chain E) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL1163 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1162E PRO* 1.3 85.7 - - + +
1164E PHE* 1.3 64.3 + - - +
1165E LEU 3.1 2.4 + - - -
1166E VAL* 3.6 23.5 + - + +
1167E ALA* 4.4 1.6 + - - +
1266E THR* 3.8 24.9 - - + +
1270E ASN* 5.0 4.0 - - - +
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Residues in contact with PHE1164 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1154E LEU* 4.7 6.7 - - + -
1157E ILE* 3.6 23.8 - - + -
1158E SER* 5.0 3.4 - - - -
1161E THR* 3.2 31.2 + - - +
1162E PRO 3.1 0.4 - - - -
1163E VAL* 1.3 80.9 - - - +
1165E LEU* 1.3 61.7 + - + +
1167E ALA* 3.0 9.8 + - + +
1168E LEU* 2.9 57.1 + - + -
1259E VAL* 3.8 38.6 - - + -
1262E ILE* 3.6 38.1 - - + -
1263E ALA* 4.1 12.1 - - + -
1266E THR* 5.2 4.3 - - + -
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Residues in contact with LEU1165 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1158E SER* 3.7 30.1 - - - -
1161E THR 5.1 0.2 - - - +
1162E PRO* 3.3 23.1 - - + +
1163E VAL 3.1 0.8 - - - -
1164E PHE* 1.3 80.0 - - + +
1166E VAL* 1.3 58.1 + - + +
1168E LEU* 3.4 26.2 - - + +
1169E LEU* 3.0 31.4 + - - +
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Residues in contact with VAL1166 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1163E VAL* 3.9 19.1 - - + +
1164E PHE 3.2 0.6 - - - -
1165E LEU* 1.3 79.0 - - + +
1167E ALA* 1.3 60.3 + - - +
1169E LEU* 3.8 5.3 + - - +
1170E PRO* 3.3 17.8 - - - +
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Residues in contact with ALA1167 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1163E VAL 4.4 1.4 + - - +
1164E PHE* 3.0 13.1 + - + +
1166E VAL* 1.3 77.6 - - - +
1168E LEU* 1.3 64.6 + - - +
1170E PRO* 3.3 13.9 - - - +
1171E LEU* 3.3 20.1 - - + +
1262E ILE* 3.8 39.7 - - + -
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Residues in contact with LEU1168 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1154E LEU* 3.8 44.2 - - + +
1164E PHE* 2.9 34.3 + - + +
1165E LEU* 3.1 31.6 + - + +
1167E ALA* 1.3 79.1 - - - +
1169E LEU* 1.3 57.3 + - - +
1171E LEU* 3.3 8.6 + - + +
1172E ALA* 2.9 34.0 + - + +
1259E VAL* 5.2 7.2 - - + -
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Residues in contact with LEU1169 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1165E LEU 3.0 14.3 + - - +
1166E VAL* 4.1 5.2 - - - +
1168E LEU* 1.3 76.7 - - - +
1170E PRO* 1.3 68.8 - - + +
1172E ALA* 3.1 10.9 + - + +
1173E VAL* 3.0 32.7 + - + +
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Residues in contact with PRO1170 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1166E VAL 3.3 13.9 - - - +
1167E ALA* 3.3 16.4 - - - +
1169E LEU* 1.3 93.3 - - + +
1171E LEU* 1.3 61.4 + - + +
1173E VAL* 3.1 12.1 + - + +
1174E VAL* 2.9 33.7 + - + +
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Residues in contact with LEU1171 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1164E PHE* 5.8 0.2 - - + -
1167E ALA 3.3 20.6 - - - +
1168E LEU* 3.3 10.3 + - + +
1169E LEU 3.3 0.4 - - - -
1170E PRO* 1.3 78.3 - - + +
1172E ALA* 1.3 61.7 + - - +
1174E VAL* 3.3 10.3 + - + +
1175E CYS* 2.9 35.6 + - - -
1255E ILE* 4.1 25.5 - - + +
1258E CYS* 4.3 23.6 - - + -
1259E VAL* 3.7 28.7 - - + -
1262E ILE* 4.6 7.4 - - + -
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Residues in contact with ALA1172 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1168E LEU* 2.9 20.9 + - + +
1169E LEU* 3.4 15.7 - - + +
1171E LEU* 1.3 76.6 - - - +
1173E VAL* 1.3 57.1 + - + +
1175E CYS* 3.4 8.0 + - - +
1176E TYR* 2.9 28.6 + - - +
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Residues in contact with VAL1173 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1169E LEU* 3.0 24.7 + - + +
1170E PRO* 3.1 13.4 + - + +
1172E ALA* 1.3 78.1 - - + +
1174E VAL* 1.3 59.5 + - + +
1176E TYR* 3.2 10.2 + - + +
1177E PHE* 3.0 53.6 + - + -
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Residues in contact with VAL1174 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1170E PRO* 2.9 21.1 + - + +
1171E LEU* 3.3 12.3 + - + +
1173E VAL* 1.3 79.4 - - + +
1175E CYS* 1.3 57.6 + - - +
1177E PHE* 3.2 10.8 + - + +
1178E ILE* 2.9 38.6 + - + +
1255E ILE* 4.0 20.2 - - + -
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Residues in contact with CYS1175 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1171E LEU 2.9 24.0 + - - +
1172E ALA* 3.7 8.5 - - - +
1174E VAL* 1.3 76.5 - - - +
1176E TYR* 1.3 57.3 + - - +
1178E ILE* 3.9 5.7 - - - +
1179E GLN* 2.8 36.1 + - - +
1252E MET* 6.1 1.1 - - - -
1255E ILE* 3.7 31.4 - - - -
1295E LEU* 4.5 24.9 - - + -
1299E VAL* 5.9 0.3 - - - +
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Residues in contact with TYR1176 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1172E ALA 2.9 14.9 + - - +
1173E VAL* 3.2 12.5 + - + +
1175E CYS* 1.3 76.8 - - - +
1177E PHE* 1.3 79.6 + + - +
1179E GLN* 3.3 18.2 - - - +
1180E LYS* 3.0 73.4 + - + +
1183E ARG* 5.8 1.1 - - - -
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Residues in contact with PHE1177 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1173E VAL* 3.0 35.5 + - + -
1174E VAL* 3.7 11.4 - - + +
1176E TYR* 1.3 101.9 - + - +
1178E ILE* 1.3 66.1 + - + +
1180E LYS* 3.3 11.6 + - + +
1181E TYR* 3.0 46.7 + + + -
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Residues in contact with ILE1178 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1174E VAL* 2.9 33.2 + - + +
1175E CYS* 3.9 5.6 - - - +
1177E PHE* 1.3 75.6 - - + +
1179E GLN* 1.3 56.9 + - - +
1181E TYR* 3.1 8.6 + - + +
1182E PHE* 2.7 33.9 + - + +
1247E TRP* 4.8 20.3 - - + -
1248E LEU* 3.7 30.3 - - + +
1251E CYS* 3.6 33.4 - - + -
1252E MET* 5.2 2.0 - - + +
1255E ILE* 4.5 10.5 - - + -
1299E VAL* 6.1 0.7 - - + -
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Residues in contact with GLN1179 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1175E CYS* 2.8 21.4 + - - +
1176E TYR* 3.3 22.4 - - - +
1178E ILE* 1.3 79.5 - - - +
1180E LYS* 1.3 63.0 + - + +
1182E PHE* 3.9 4.1 - - - +
1183E ARG* 3.0 41.5 + - + +
1299E VAL* 4.8 22.8 - - + +
1302E LEU* 3.4 28.6 - - + +
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Residues in contact with LYS1180 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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241E HIS* 4.9 17.9 - - + -
1176E TYR* 3.0 61.4 + - + +
1177E PHE* 3.3 13.8 + - + +
1179E GLN* 1.3 74.9 - - + +
1181E TYR* 1.3 71.4 + - + +
1183E ARG* 3.3 28.9 + - - +
1184E VAL* 3.1 29.9 + - + +
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Residues in contact with TYR1181 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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237E ILE* 4.2 32.5 - - + +
238E LYS* 5.0 15.8 - - + +
241E HIS* 3.4 54.0 + + + +
1177E PHE* 3.0 38.4 + + + +
1178E ILE* 3.7 6.5 - - + +
1180E LYS* 1.3 76.6 - - + +
1182E PHE* 1.3 68.1 + - - +
1184E VAL* 3.4 6.0 + - - +
1185E ALA* 3.0 24.9 + - - +
1247E TRP* 4.7 7.2 - + + -
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Residues in contact with PHE1182 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1178E ILE 2.7 20.4 + - - +
1179E GLN 3.9 2.2 - - - +
1181E TYR* 1.3 74.2 - - - +
1183E ARG* 1.3 58.6 + - + +
1185E ALA* 3.1 5.1 + - + -
1186E SER* 2.7 57.0 + - - -
1244E ALA* 4.0 15.7 - - + -
1245E ASN* 3.8 25.8 - - - -
1247E TRP* 4.6 13.4 - + + -
1248E LEU* 3.4 53.8 - - + -
1299E VAL* 3.6 15.7 - - + -
1300E ARG* 4.7 10.5 - - + -
1303E ALA* 3.6 23.8 - - + -
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Residues in contact with ARG1183 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1176E TYR* 5.8 0.6 - - - -
1179E GLN* 3.0 31.4 + - + +
1180E LYS* 3.3 38.1 + - - +
1182E PHE* 1.3 81.5 - - + +
1184E VAL* 1.3 66.6 + - + +
1186E SER* 3.9 0.5 - - - -
1187E ARG* 3.0 32.3 + - - +
1299E VAL* 5.3 2.0 - - + -
1302E LEU* 3.7 29.5 - - + +
1303E ALA* 4.3 20.0 - - + +
1306E GLU* 3.2 41.8 + - - +
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Residues in contact with VAL1184 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240E ALA 3.5 30.3 - - - +
241E HIS* 4.2 21.3 - - + +
1180E LYS* 3.1 15.9 + - + +
1181E TYR* 3.7 7.6 - - - +
1183E ARG* 1.3 81.5 - - + +
1185E ALA* 1.3 63.2 + - - +
1187E ARG* 3.4 6.3 + - - +
1188E ASP* 3.1 36.4 + - - +
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Residues in contact with ALA1185 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236E PHE* 5.3 3.4 - - + -
237E ILE* 3.9 25.4 - - + -
240E ALA* 4.5 13.0 - - + -
1181E TYR 3.0 17.7 + - - +
1182E PHE* 3.8 4.7 - - + +
1184E VAL* 1.3 77.6 - - - +
1186E SER* 1.3 57.6 + - - +
1188E ASP* 3.4 7.4 + - - +
1189E LEU* 2.9 43.8 + - + +
1244E ALA* 5.4 5.4 - - + -
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Residues in contact with SER1186 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1182E PHE* 2.7 54.6 + - - -
1183E ARG 3.9 2.9 - - - -
1185E ALA* 1.3 72.0 - - - +
1187E ARG* 1.3 59.0 + - - +
1189E LEU* 4.8 4.3 - - - -
1190E GLN* 2.9 36.1 + - - +
1241E LEU* 4.3 4.9 - - - +
1244E ALA* 5.7 3.1 - - - +
1245E ASN* 4.7 5.7 + - - +
1303E ALA* 4.0 11.1 - - - +
1307E ILE* 4.6 5.0 - - - +
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Residues in contact with ARG1187 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1183E ARG* 3.0 22.5 + - - +
1184E VAL* 3.8 5.6 - - - +
1186E SER* 1.3 74.6 - - - +
1188E ASP* 1.3 66.6 + - - +
1190E GLN* 3.9 0.5 - - - +
1191E GLN* 3.0 27.9 + - - +
1303E ALA* 4.7 3.8 - - + +
1306E GLU* 3.1 52.2 + - - +
1307E ILE* 3.7 29.6 - - + +
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Residues in contact with ASP1188 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240E ALA* 4.4 3.3 - - - +
244E PRO* 5.2 3.2 - - - +
245E ILE* 3.6 40.8 + - + +
1184E VAL* 3.1 32.5 + - - +
1185E ALA* 3.7 5.9 - - - +
1186E SER 3.2 0.2 - - - -
1187E ARG* 1.3 80.2 - - - +
1189E LEU* 1.3 59.4 + - + +
1191E GLN* 3.9 3.7 - - - +
1192E LEU* 2.9 30.5 + - - +
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Residues in contact with LEU1189 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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233E MET* 6.1 0.7 - - - -
236E PHE* 4.9 15.0 - - + -
245E ILE* 5.3 4.7 - - + -
250E ILE* 4.5 19.7 - - + -
1185E ALA* 2.9 25.0 + - + +
1186E SER* 4.3 0.7 - - - +
1188E ASP* 1.3 77.8 - - + +
1190E GLN* 1.3 59.6 + - - +
1192E LEU* 3.2 8.2 + - + +
1193E ASP* 2.8 31.9 + - - +
1237E ALA* 5.0 6.4 - - - +
1240E PHE* 3.5 50.0 - - + +
1241E LEU* 3.4 19.0 - - + +
1244E ALA* 3.7 18.6 - - + -
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Residues in contact with GLN1190 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1186E SER* 2.9 21.3 + - - +
1189E LEU* 1.3 76.0 - - - +
1191E GLN* 1.3 62.9 + - - +
1193E ASP* 3.3 3.9 + - - +
1194E ASP* 2.9 61.5 + - - +
1241E LEU* 3.2 31.6 - - + +
1307E ILE* 3.7 29.8 - - + -
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Residues in contact with GLN1191 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1187E ARG 3.0 18.6 + - - +
1188E ASP* 4.0 3.4 - - - +
1190E GLN* 1.3 76.4 - - - +
1192E LEU* 1.3 58.3 + - - +
1194E ASP* 3.4 12.7 + - - +
1195E THR* 3.0 50.3 + - + +
1307E ILE* 5.2 9.8 - - + +
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Residues in contact with LEU1192 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
245E ILE* 4.6 12.3 - - + +
246E ASP* 4.6 1.1 - - - -
247E LEU* 4.4 29.4 - - + +
250E ILE* 3.7 32.8 - - + -
1188E ASP 2.9 18.3 + - - +
1189E LEU* 3.2 9.8 + - + +
1191E GLN* 1.3 78.3 - - - +
1193E ASP* 1.3 51.9 + - - +
1195E THR* 2.7 19.8 + - - +
1196E THR* 2.2 37.4 + - - +
1237E ALA* 4.8 7.4 - - + -
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Residues in contact with ASP1193 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1189E LEU 2.8 17.6 + - - +
1190E GLN* 3.7 8.5 + - - +
1192E LEU* 1.3 77.4 - - - +
1194E ASP* 1.3 69.5 + - - +
1196E THR* 3.0 5.5 + - - -
1197E GLN* 3.0 28.8 + - - +
1234E ASN* 3.7 10.1 - - - +
1237E ALA* 3.7 14.8 - - + +
1238E SER* 2.8 38.0 + - - -
1241E LEU* 5.0 12.1 - - + +
2001E GBM 5.1 3.7 - - - +
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Residues in contact with ASP1194 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1190E GLN* 2.9 47.7 + - - +
1191E GLN* 3.7 16.1 - - - +
1193E ASP* 1.3 84.9 - - - +
1195E THR* 1.3 60.6 + - - +
1197E GLN* 3.2 31.3 + - - +
1198E LEU* 4.0 4.0 + - - +
1307E ILE* 6.0 1.0 - - - +
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Residues in contact with THR1195 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1191E GLN* 3.0 33.0 + - + +
1192E LEU* 2.7 34.7 + - - +
1194E ASP* 1.3 76.2 - - - +
1196E THR* 1.3 61.0 + - - +
1198E LEU* 3.8 5.2 + - - +
1199E PRO* 3.2 20.1 - - - +
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Residues in contact with THR1196 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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247E LEU* 4.9 10.9 - - + +
1192E LEU* 2.2 36.7 + - - +
1193E ASP* 3.0 9.2 + - - -
1195E THR* 1.3 76.4 + - - +
1197E GLN* 1.3 65.4 + - - +
1198E LEU 3.2 0.9 + - - -
1199E PRO* 3.3 11.9 - - - +
1200E LEU* 4.3 5.9 + - - +
1230E TYR* 4.8 4.4 - - - +
1233E SER* 3.5 46.0 - - - +
1234E ASN* 3.5 8.1 - - - +
1237E ALA* 4.1 5.0 - - - +
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Residues in contact with GLN1197 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1193E ASP* 3.0 16.5 + - - +
1194E ASP* 3.2 26.2 + - - +
1196E THR* 1.3 77.5 - - - +
1198E LEU* 1.3 80.3 + - - +
1200E LEU* 3.4 18.2 - - - +
1201E VAL* 3.6 18.0 + - - +
1234E ASN* 3.5 28.7 - - - +
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Residues in contact with LEU1198 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1194E ASP 4.2 3.4 - - - +
1195E THR* 3.8 8.2 + - - +
1196E THR 3.2 2.0 - - - -
1197E GLN* 1.3 93.2 - - - +
1199E PRO* 1.3 67.0 - - + +
1200E LEU 3.1 2.0 - - - -
1201E VAL* 3.2 20.7 - - + +
1202E SER* 2.8 37.8 + - - +
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Residues in contact with PRO1199 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1195E THR 3.2 19.7 - - - +
1196E THR* 3.3 11.7 - - - +
1198E LEU* 1.3 90.0 - - + +
1200E LEU* 1.3 54.8 + - - +
1202E SER* 3.6 11.1 - - - +
1203E HIS* 2.9 31.5 + - - +
1230E TYR* 3.8 25.2 - - + +
----------------------------------------------------------
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Residues in contact with LEU1200 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392E GLN* 3.6 31.2 - - + +
421E VAL* 4.8 8.3 - - + -
1196E THR 4.3 3.7 + - - +
1197E GLN* 3.4 13.6 + - - +
1198E LEU 3.1 0.8 - - - -
1199E PRO* 1.3 80.1 - - - +
1201E VAL* 1.3 72.3 + - + +
1203E HIS* 3.7 2.4 - - - +
1204E PHE* 2.9 32.7 + - + +
1227E LEU* 4.0 15.8 - - + +
1230E TYR* 3.8 18.6 - - + +
1231E THR* 3.5 41.5 - - - +
1234E ASN* 4.6 12.8 - - + +
----------------------------------------------------------
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Residues in contact with VAL1201 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418E CYS* 4.8 6.6 - - + +
421E VAL* 5.3 6.1 - - + -
422E ALA* 4.5 24.5 - - + -
1197E GLN* 4.1 17.9 - - - +
1198E LEU* 3.2 32.7 + - + +
1200E LEU* 1.3 88.3 - - + +
1202E SER* 1.3 58.1 + - - +
1204E PHE* 3.5 10.6 - - + +
1205E ALA* 2.9 31.0 + - - +
----------------------------------------------------------
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Residues in contact with SER1202 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
781E ASN* 6.0 5.8 - - - -
1198E LEU* 2.8 33.8 + - - +
1199E PRO* 3.6 10.4 - - - +
1201E VAL* 1.3 78.9 - - - +
1203E HIS* 1.3 56.8 + - - +
1205E ALA* 3.3 5.4 + - - +
1206E GLU* 3.0 37.8 + - - +
----------------------------------------------------------
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Residues in contact with HIS1203 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396E TYR* 4.4 5.1 - + - -
1199E PRO 2.9 20.9 + - - +
1200E LEU 3.8 1.6 - - - +
1202E SER* 1.3 72.8 - - - +
1204E PHE* 1.3 54.4 + - - +
1206E GLU* 3.7 17.1 + - - +
1207E THR* 2.2 55.1 + - - -
1223E PHE* 3.4 54.2 + + + +
1226E LYS* 4.2 10.0 - - + +
1227E LEU* 3.8 31.7 + - + +
1230E TYR* 3.5 19.4 - + + -
----------------------------------------------------------
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Residues in contact with PHE1204 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392E GLN 5.5 1.1 - - - -
395E ILE* 4.0 7.4 - - + -
396E TYR* 4.9 18.2 - + + -
399E ILE* 3.6 32.5 - - + -
417E ILE* 3.6 35.9 - - + -
418E CYS* 3.9 16.2 - - - -
421E VAL* 3.5 33.2 - - + -
1200E LEU* 2.9 22.9 + - + +
1201E VAL* 3.5 12.1 - - + +
1203E HIS* 1.3 80.4 - - - +
1205E ALA* 1.3 59.0 + - - +
1207E THR* 3.1 6.1 + - - -
1208E VAL* 3.0 37.6 + - + +
1227E LEU* 5.1 11.2 - - + -
----------------------------------------------------------
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Residues in contact with ALA1205 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414E ALA* 5.6 0.6 - - - +
418E CYS* 3.5 25.4 - - - -
1201E VAL 2.9 16.8 + - - +
1202E SER* 3.8 4.5 - - - +
1204E PHE* 1.3 75.5 - - - +
1206E GLU* 1.3 63.4 + - - +
1208E VAL* 3.3 4.9 + - - +
1209E GLU* 3.0 31.4 + - + +
----------------------------------------------------------
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Residues in contact with GLU1206 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
779E LEU 5.1 3.4 - - - +
780E LEU* 3.5 18.3 - - + +
781E ASN* 2.6 47.6 + - + +
1202E SER* 3.0 21.2 + - - +
1203E HIS* 3.7 18.8 + - - +
1205E ALA* 1.3 77.0 - - - +
1207E THR* 1.3 57.7 + - - +
1209E GLU* 2.9 21.7 + - - +
1210E GLY* 3.0 13.9 + - - -
1214E ILE* 5.0 1.4 - - - +
----------------------------------------------------------
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Residues in contact with THR1207 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396E TYR* 3.6 33.0 - - + +
399E ILE* 4.8 2.6 - - + +
400E MET* 3.8 15.0 - - + -
1203E HIS* 2.2 48.2 + - + +
1204E PHE* 3.6 7.6 - - - -
1206E GLU* 1.3 76.1 - - - +
1208E VAL* 1.3 63.4 + - - +
1210E GLY 4.0 0.7 - - - -
1211E LEU* 3.6 23.9 + - - +
1214E ILE* 4.2 21.1 - - + +
1223E PHE* 4.8 1.8 - - + -
----------------------------------------------------------
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Residues in contact with VAL1208 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399E ILE* 4.0 32.1 - - + -
414E ALA* 3.4 31.9 - - + +
417E ILE* 4.1 18.6 - - + -
418E CYS* 5.4 0.4 - - - -
1204E PHE* 3.0 27.6 + - + +
1205E ALA* 3.8 7.0 - - - +
1207E THR* 1.3 81.3 - - - +
1209E GLU* 1.3 62.5 + - - +
1210E GLY 3.3 0.7 + - - -
1211E LEU* 3.4 20.7 + - + +
----------------------------------------------------------
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Residues in contact with GLU1209 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414E ALA* 3.4 26.9 - - + +
415E GLY 5.3 0.2 + - - -
778E TRP* 4.6 10.9 - - + +
1205E ALA* 3.0 22.8 + - + +
1206E GLU* 2.9 9.6 + - - +
1208E VAL* 1.3 76.5 - - - +
1210E GLY* 1.3 57.7 + - - +
1211E LEU 3.5 0.7 + - - -
----------------------------------------------------------
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Residues in contact with GLY1210 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
778E TRP* 4.5 11.4 - - - +
1206E GLU 3.0 12.2 + - - -
1207E THR 4.0 3.1 - - - -
1209E GLU* 1.3 80.1 - - - +
1211E LEU* 1.3 61.2 + - - -
1212E THR 3.5 2.0 - - - -
1213E THR* 3.3 18.2 + - - -
1214E ILE* 3.1 30.3 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il