Contacts of the helix formed by residues 1163 - 1210 (chain G) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL1163 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1162G PRO* 1.3 86.2 - - + +
1164G PHE* 1.3 64.6 + - - +
1165G LEU* 3.1 3.2 + - - -
1166G VAL* 3.6 23.8 + - + +
1167G ALA* 4.4 1.9 + - - +
1266G THR* 3.8 24.9 - - + +
1270G ASN* 5.0 3.8 - - - +
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Residues in contact with PHE1164 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1154G LEU* 4.7 7.6 - - + -
1157G ILE* 3.6 25.1 - - + -
1158G SER* 5.0 3.1 - - - -
1161G THR* 3.2 31.0 + - - +
1162G PRO 3.1 0.8 - - - -
1163G VAL* 1.3 80.7 - - - +
1165G LEU* 1.3 60.2 + - + +
1166G VAL 3.2 0.2 - - - -
1167G ALA* 3.0 10.4 + - + +
1168G LEU* 2.9 57.6 + - + -
1171G LEU* 6.1 0.2 - - + -
1259G VAL* 3.8 38.6 - - + -
1262G ILE* 3.6 37.5 - - + -
1263G ALA* 4.1 12.1 - - + -
1266G THR* 5.2 4.5 - - + -
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Residues in contact with LEU1165 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1158G SER* 3.7 30.7 - - - +
1162G PRO* 3.3 21.1 - - + +
1163G VAL 3.1 0.6 - - - -
1164G PHE* 1.3 79.6 - - + +
1166G VAL* 1.3 58.3 + - + +
1168G LEU* 3.4 27.3 - - + +
1169G LEU* 3.0 31.4 + - - +
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Residues in contact with VAL1166 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1163G VAL* 3.9 18.4 - - + +
1164G PHE 3.2 0.4 - - - -
1165G LEU* 1.3 79.9 - - + +
1167G ALA* 1.3 60.9 + - - +
1169G LEU* 3.8 4.6 + - - +
1170G PRO* 3.3 17.5 - - - +
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Residues in contact with ALA1167 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1163G VAL 4.4 1.5 + - - +
1164G PHE* 3.0 12.7 + - + +
1166G VAL* 1.3 79.3 - - - +
1168G LEU* 1.3 63.5 + - - +
1170G PRO* 3.3 13.4 - - - +
1171G LEU* 3.3 20.0 - - - +
1262G ILE* 3.8 40.8 - - + -
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Residues in contact with LEU1168 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1154G LEU* 3.8 43.7 - - + +
1164G PHE* 2.9 32.5 + - + +
1165G LEU* 3.1 33.6 + - + +
1167G ALA* 1.3 79.1 - - - +
1169G LEU* 1.3 58.7 + - - +
1171G LEU* 3.3 9.2 + - + +
1172G ALA* 2.9 32.5 + - + +
1259G VAL* 5.2 7.4 - - + -
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Residues in contact with LEU1169 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1165G LEU 3.0 14.2 + - - +
1166G VAL* 4.1 4.9 - - - +
1168G LEU* 1.3 76.3 - - - +
1170G PRO* 1.3 68.8 - - + +
1172G ALA* 3.1 11.5 + - + +
1173G VAL* 3.0 32.5 + - + +
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Residues in contact with PRO1170 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1166G VAL 3.3 15.0 - - - +
1167G ALA* 3.3 16.8 - - - +
1169G LEU* 1.3 92.9 - - + +
1171G LEU* 1.3 60.7 + - + +
1173G VAL* 3.1 12.4 + - + +
1174G VAL* 2.9 34.2 + - + +
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Residues in contact with LEU1171 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1164G PHE* 5.8 0.2 - - + -
1167G ALA* 3.3 21.5 - - + +
1168G LEU* 3.3 10.5 + - + +
1169G LEU 3.3 0.4 - - - -
1170G PRO* 1.3 77.6 - - + +
1172G ALA* 1.3 61.0 + - - +
1174G VAL* 3.3 10.0 + - + +
1175G CYS* 2.9 35.8 + - - -
1255G ILE* 4.1 26.0 - - + +
1258G CYS* 4.3 23.6 - - + -
1259G VAL* 3.7 28.5 - - + -
1262G ILE* 4.6 7.0 - - + -
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Residues in contact with ALA1172 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1168G LEU* 2.9 21.3 + - + +
1169G LEU* 3.4 14.6 - - + +
1171G LEU* 1.3 77.7 - - - +
1173G VAL* 1.3 56.0 + - + +
1175G CYS* 3.4 8.1 + - - +
1176G TYR* 2.9 28.4 + - - +
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Residues in contact with VAL1173 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1169G LEU* 3.0 24.0 + - + +
1170G PRO* 3.1 13.7 + - + +
1172G ALA* 1.3 77.3 - - + +
1174G VAL* 1.3 59.4 + - + +
1176G TYR* 3.2 9.7 + - + +
1177G PHE* 3.0 54.8 + - + -
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Residues in contact with VAL1174 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1170G PRO* 2.9 21.5 + - + +
1171G LEU* 3.7 12.1 - - + +
1173G VAL* 1.3 79.7 - - + +
1175G CYS* 1.3 58.0 + - - +
1177G PHE* 3.2 10.2 + - + +
1178G ILE* 2.9 39.9 + - + +
1255G ILE* 4.0 18.6 - - + -
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Residues in contact with CYS1175 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1171G LEU 2.9 25.7 + - - +
1172G ALA* 3.7 7.9 - - - +
1174G VAL* 1.3 76.2 - - - +
1176G TYR* 1.3 57.3 + - - +
1178G ILE* 3.9 7.0 - - - +
1179G GLN* 2.8 34.6 + - - +
1252G MET* 6.1 1.1 - - - -
1255G ILE* 3.7 32.3 - - - -
1295G LEU* 4.5 24.0 - - + -
1299G VAL* 5.9 0.3 - - - +
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Residues in contact with TYR1176 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1172G ALA 2.9 14.1 + - - +
1173G VAL* 3.3 12.1 - - + +
1175G CYS* 1.3 77.6 - - - +
1177G PHE* 1.3 79.7 + + - +
1179G GLN* 3.3 19.4 - - - +
1180G LYS* 3.0 72.9 + - + +
1183G ARG* 5.8 0.2 - - - -
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Residues in contact with PHE1177 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1173G VAL* 3.0 36.8 + - + -
1174G VAL* 3.2 12.5 + - + +
1176G TYR* 1.3 99.9 - + - +
1178G ILE* 1.3 66.0 + - + +
1180G LYS* 3.3 12.2 + - + +
1181G TYR* 3.0 47.1 + + + -
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Residues in contact with ILE1178 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1174G VAL* 2.9 33.1 + - + +
1175G CYS* 3.9 5.2 - - - +
1177G PHE* 1.3 74.9 - - + +
1179G GLN* 1.3 56.2 + - - +
1181G TYR* 3.1 8.6 + - + +
1182G PHE* 2.7 33.7 + - + +
1247G TRP* 4.8 19.0 - - + -
1248G LEU* 3.7 31.6 - - + +
1251G CYS* 3.6 33.2 - - + -
1252G MET* 5.2 1.3 - - + +
1255G ILE* 4.5 11.2 - - + -
1299G VAL* 6.1 0.4 - - + -
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Residues in contact with GLN1179 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1175G CYS* 2.8 22.2 + - - +
1176G TYR* 3.3 23.9 - - - +
1178G ILE* 1.3 78.9 - - - +
1180G LYS* 1.3 63.3 + - + +
1182G PHE* 3.4 4.3 + - - +
1183G ARG* 3.0 42.5 + - + +
1299G VAL* 4.8 22.3 - - + +
1302G LEU* 3.4 28.5 - - + +
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Residues in contact with LYS1180 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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241G HIS* 4.9 17.3 - - + -
1176G TYR* 3.0 61.1 + - + +
1177G PHE* 3.3 13.9 + - + +
1179G GLN* 1.3 75.3 - - + +
1181G TYR* 1.3 70.7 + - + +
1183G ARG* 3.3 29.6 + - - +
1184G VAL* 3.1 30.2 + - + +
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Residues in contact with TYR1181 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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237G ILE* 4.2 33.8 - - + +
238G LYS* 5.0 15.0 - - + +
240G ALA* 6.0 0.2 - - - +
241G HIS* 3.4 53.7 + + + -
1177G PHE* 3.0 38.0 + + + +
1178G ILE* 3.7 7.0 - - + +
1180G LYS* 1.3 76.4 - - + +
1182G PHE* 1.3 67.0 + - - +
1184G VAL* 3.4 6.2 + - - +
1185G ALA* 3.0 24.7 + - - +
1247G TRP* 4.7 7.0 - + + -
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Residues in contact with PHE1182 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1178G ILE 2.7 20.3 + - - +
1179G GLN 3.9 2.2 - - - +
1181G TYR* 1.3 74.6 - - - +
1183G ARG* 1.3 57.5 + - + +
1185G ALA* 3.1 5.5 + - + -
1186G SER* 2.7 56.2 + - - -
1244G ALA* 4.0 16.2 - - + -
1245G ASN* 3.8 25.8 - - - -
1247G TRP* 4.6 12.5 - + + -
1248G LEU* 3.4 55.0 - - + -
1299G VAL* 3.6 15.3 - - + -
1300G ARG* 4.7 10.8 - - + -
1303G ALA* 3.6 24.9 - - + -
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Residues in contact with ARG1183 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1176G TYR* 5.8 0.8 - - - -
1179G GLN* 3.0 30.2 + - + +
1180G LYS* 3.4 37.4 + - - +
1182G PHE* 1.3 79.4 - - + +
1184G VAL* 1.3 67.2 + - + +
1186G SER* 3.9 0.3 - - - -
1187G ARG* 3.0 32.9 + - - +
1299G VAL* 5.4 2.7 - - + -
1302G LEU* 3.7 30.4 - - + +
1303G ALA* 4.3 18.2 - - + +
1306G GLU* 3.2 42.5 + - - +
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Residues in contact with VAL1184 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240G ALA* 3.5 30.3 - - + +
241G HIS* 4.2 21.3 - - + +
1180G LYS* 3.1 15.7 + - + +
1181G TYR* 3.7 7.6 - - - +
1183G ARG* 1.3 82.4 - - + +
1185G ALA* 1.3 62.3 + - - +
1187G ARG* 3.4 5.4 + - - +
1188G ASP* 3.1 35.6 + - - +
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Residues in contact with ALA1185 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236G PHE* 5.3 3.1 - - + -
237G ILE* 3.9 25.8 - - + -
240G ALA* 4.5 13.7 - - + -
1181G TYR 3.0 16.6 + - - +
1182G PHE* 3.8 4.3 - - + +
1184G VAL* 1.3 78.4 - - - +
1186G SER* 1.3 57.2 - - - +
1188G ASP* 3.4 7.0 + - - +
1189G LEU* 2.9 43.9 + - + +
1244G ALA* 5.4 5.6 - - + -
1247G TRP* 6.2 0.2 - - + -
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Residues in contact with SER1186 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1182G PHE* 2.7 55.8 + - - -
1183G ARG 3.9 2.5 - - - -
1185G ALA* 1.3 71.8 - - - +
1187G ARG* 1.3 60.0 + - - +
1189G LEU* 4.8 4.0 - - - -
1190G GLN* 2.9 35.6 + - - +
1241G LEU* 4.3 5.4 - - - +
1244G ALA* 5.7 2.5 - - - -
1245G ASN* 4.7 5.0 + - - -
1303G ALA* 4.0 10.5 - - - +
1307G ILE* 4.6 5.1 - - - +
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Residues in contact with ARG1187 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1183G ARG 3.0 22.1 + - - +
1184G VAL* 3.8 5.6 - - - +
1186G SER* 1.3 74.7 - - - +
1188G ASP* 1.3 67.6 + - - +
1190G GLN* 3.9 0.9 - - - +
1191G GLN* 3.0 27.5 + - - +
1303G ALA* 4.7 4.3 - - + +
1306G GLU* 3.1 52.2 + - - +
1307G ILE* 3.7 31.1 - - + +
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Residues in contact with ASP1188 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240G ALA* 4.4 3.3 - - - +
244G PRO* 5.2 2.6 - - - +
245G ILE* 3.6 40.2 + - + +
1184G VAL* 3.1 31.8 + - - +
1185G ALA* 3.7 6.3 - - - +
1187G ARG* 1.3 80.5 - - - +
1189G LEU* 1.3 60.0 + - + +
1191G GLN* 3.9 3.4 - - - +
1192G LEU* 2.9 31.3 + - - +
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Residues in contact with LEU1189 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233G MET* 6.1 0.4 - - - -
236G PHE* 4.9 14.8 - - + -
245G ILE* 5.3 4.9 - - + -
250G ILE* 4.5 19.3 - - + -
1185G ALA* 2.9 25.2 + - + +
1186G SER* 4.3 0.7 - - - +
1188G ASP* 1.3 78.4 - - + +
1190G GLN* 1.3 58.2 + - - +
1192G LEU* 3.2 8.0 + - + +
1193G ASP* 2.8 31.5 + - - +
1237G ALA* 5.0 6.4 - - - +
1240G PHE* 3.5 49.8 - - + +
1241G LEU* 3.4 18.5 - - + +
1244G ALA* 3.7 18.6 - - + -
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Residues in contact with GLN1190 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1186G SER* 2.9 21.7 + - - +
1187G ARG 3.9 0.2 - - - +
1189G LEU* 1.3 76.2 - - - +
1191G GLN* 1.3 64.2 + - - +
1193G ASP* 3.3 4.5 + - - +
1194G ASP* 2.9 60.3 + - - +
1241G LEU* 3.2 31.1 - - + +
1307G ILE* 3.7 30.7 - - + -
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Residues in contact with GLN1191 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1187G ARG 3.0 19.0 + - - +
1188G ASP* 4.0 3.4 - - - +
1190G GLN* 1.3 76.0 - - - +
1192G LEU* 1.3 58.5 + - - +
1194G ASP* 3.4 13.6 + - - +
1195G THR* 3.0 50.3 + - + +
1307G ILE* 5.2 10.5 - - + +
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Residues in contact with LEU1192 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
245G ILE* 4.6 13.2 - - + +
246G ASP* 4.6 1.1 - - - -
247G LEU* 4.4 28.9 - - + +
250G ILE* 3.7 33.0 - - + -
1188G ASP 2.9 18.4 + - - +
1189G LEU* 3.7 9.9 - - + +
1191G GLN* 1.3 77.7 - - - +
1193G ASP* 1.3 51.9 + - - +
1195G THR* 2.7 21.2 + - - +
1196G THR* 2.2 37.7 + - - +
1237G ALA* 4.8 6.7 - - + -
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Residues in contact with ASP1193 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1189G LEU 2.8 18.0 + - - +
1190G GLN* 3.3 9.0 + - - +
1192G LEU* 1.3 77.1 - - - +
1194G ASP* 1.3 69.9 + - - +
1196G THR* 3.5 4.0 - - - -
1197G GLN* 3.0 29.2 + - - +
1234G ASN* 3.7 9.3 - - - +
1237G ALA* 3.7 15.5 - - + +
1238G SER* 2.8 38.8 + - - -
1241G LEU* 5.0 11.6 - - + +
2001G GBM 5.1 3.9 - - - +
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Residues in contact with ASP1194 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1190G GLN* 2.9 45.8 + - - +
1191G GLN* 3.7 16.9 - - - +
1193G ASP* 1.3 85.1 - - - +
1195G THR* 1.3 61.0 + - - +
1197G GLN* 3.2 32.0 + - - +
1198G LEU* 4.0 3.8 + - - +
1307G ILE* 6.0 0.5 - - - +
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Residues in contact with THR1195 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1191G GLN* 3.0 33.1 + - + +
1192G LEU* 2.7 34.7 + - - +
1194G ASP* 1.3 76.4 - - - +
1196G THR* 1.3 61.2 + - - +
1198G LEU* 3.8 5.5 + - - +
1199G PRO* 3.2 20.1 - - - +
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Residues in contact with THR1196 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247G LEU* 4.9 10.6 - - + +
1192G LEU* 2.2 37.5 + - - +
1193G ASP* 3.0 9.7 + - - -
1195G THR* 1.3 77.0 + - - +
1197G GLN* 1.3 65.9 + - - +
1198G LEU 3.2 0.9 + - - -
1199G PRO* 3.3 12.2 - - - +
1200G LEU* 4.3 6.2 + - - +
1230G TYR* 4.8 4.3 - - - +
1233G SER* 3.5 46.4 - - - +
1234G ASN* 3.5 8.8 - - - +
1237G ALA* 4.1 5.2 - - + +
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Residues in contact with GLN1197 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1193G ASP* 3.0 17.3 + - - +
1194G ASP* 3.2 27.9 + - - +
1196G THR* 1.3 77.3 - - - +
1198G LEU* 1.3 80.6 + - - +
1199G PRO 3.6 0.2 - - - -
1200G LEU* 3.4 18.3 - - - +
1201G VAL* 3.6 17.7 + - - +
1234G ASN* 3.5 29.5 + - - +
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Residues in contact with LEU1198 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1194G ASP 4.2 3.6 - - - +
1195G THR* 3.8 7.8 + - - +
1196G THR 3.2 1.6 - - - -
1197G GLN* 1.3 92.3 - - - +
1199G PRO* 1.3 66.9 - - + +
1200G LEU 3.1 1.3 - - - -
1201G VAL* 3.2 21.0 - - + +
1202G SER* 2.8 36.9 + - - +
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Residues in contact with PRO1199 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1195G THR 3.2 18.2 - - - +
1196G THR* 3.3 11.2 - - - +
1198G LEU* 1.3 91.0 - - + +
1200G LEU* 1.3 54.5 + - - +
1202G SER* 3.6 10.3 - - - +
1203G HIS* 2.9 31.7 + - - +
1230G TYR* 3.8 26.1 - - + +
----------------------------------------------------------
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Residues in contact with LEU1200 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392G GLN* 3.6 31.0 - - + +
421G VAL* 4.8 8.3 - - + -
1196G THR 4.3 3.7 + - - +
1197G GLN* 3.4 14.1 + - - +
1198G LEU 3.1 0.2 - - - -
1199G PRO* 1.3 80.4 - - - +
1201G VAL* 1.3 72.7 + - + +
1203G HIS* 3.4 2.3 + - - +
1204G PHE* 2.9 32.3 + - + +
1227G LEU* 4.0 15.9 - - + +
1230G TYR* 3.8 19.1 - - + +
1231G THR* 3.5 41.1 - - - +
1234G ASN* 4.6 12.1 - - - +
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Residues in contact with VAL1201 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418G CYS* 4.8 7.4 - - + +
421G VAL* 5.3 5.6 - - + -
422G ALA* 4.5 24.2 - - + -
1197G GLN* 3.6 17.2 + - - +
1198G LEU* 3.2 32.3 + - + +
1200G LEU* 1.3 89.4 - - + +
1202G SER* 1.3 56.1 + - - +
1204G PHE* 3.5 10.2 - - + +
1205G ALA* 2.9 30.3 + - - +
----------------------------------------------------------
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Residues in contact with SER1202 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
781G ASN* 6.0 5.6 - - - -
1198G LEU* 2.8 34.1 + - - +
1199G PRO* 3.6 10.3 - - - +
1201G VAL* 1.3 78.1 - - - +
1203G HIS* 1.3 57.0 + - - +
1204G PHE 3.3 0.2 + - - -
1205G ALA* 3.3 4.9 + - - +
1206G GLU* 3.0 37.1 + - - +
----------------------------------------------------------
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Residues in contact with HIS1203 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396G TYR* 4.4 4.9 - + - -
1199G PRO 2.9 20.7 + - - +
1200G LEU 3.8 2.0 - - - +
1202G SER* 1.3 72.2 - - - +
1204G PHE* 1.3 53.3 + - - +
1206G GLU* 3.7 17.1 + - - +
1207G THR* 2.2 55.8 + - - -
1223G PHE* 3.4 54.6 + + + +
1226G LYS* 4.2 9.1 - - + +
1227G LEU* 3.8 31.6 + - + +
1230G TYR* 3.5 20.6 - + + -
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Residues in contact with PHE1204 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392G GLN 5.5 1.6 - - - -
395G ILE* 4.0 7.6 - - + -
396G TYR* 4.9 17.0 - + + -
399G ILE* 3.6 32.1 - - + -
417G ILE* 3.6 36.3 - - + -
418G CYS* 3.9 15.9 - - - -
421G VAL* 3.5 33.0 - - + -
1200G LEU* 2.9 22.3 + - + +
1201G VAL* 3.5 11.9 - - + +
1202G SER 3.1 0.2 - - - -
1203G HIS* 1.3 79.6 - - - +
1205G ALA* 1.3 58.1 + - - +
1207G THR* 3.1 7.0 + - - -
1208G VAL* 3.0 37.5 + - + +
1227G LEU* 5.1 11.4 - - + -
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Residues in contact with ALA1205 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414G ALA* 5.6 0.4 - - - +
418G CYS* 3.5 25.8 - - - -
1201G VAL 2.9 17.4 + - - +
1202G SER* 3.8 4.5 - - - +
1204G PHE* 1.3 76.4 - - - +
1206G GLU* 1.3 63.1 + - - +
1208G VAL* 3.3 4.6 + - - +
1209G GLU* 3.0 30.1 + - + +
----------------------------------------------------------
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Residues in contact with GLU1206 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
779G LEU 5.1 2.7 - - - +
780G LEU* 3.5 18.7 - - - +
781G ASN* 2.6 48.0 + - + +
1202G SER* 3.0 21.5 + - - +
1203G HIS* 3.7 19.5 + - - +
1205G ALA* 1.3 76.5 - - - +
1207G THR* 1.3 57.1 + - - +
1209G GLU* 2.9 21.0 + - - +
1210G GLY* 3.0 14.2 + - - -
1214G ILE* 5.0 1.6 - - - +
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Residues in contact with THR1207 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396G TYR* 3.6 32.3 - - + +
399G ILE* 5.3 2.7 - - + -
400G MET* 3.8 15.3 - - + -
1203G HIS* 2.2 48.1 + - + +
1204G PHE* 3.1 7.2 + - - -
1206G GLU* 1.3 76.2 - - - +
1208G VAL* 1.3 63.5 + - - +
1210G GLY 3.9 0.9 + - - -
1211G LEU* 3.6 23.9 + - - +
1214G ILE* 4.2 20.7 - - + +
1223G PHE* 4.8 1.5 - - + -
----------------------------------------------------------
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Residues in contact with VAL1208 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399G ILE* 4.0 32.5 - - + -
414G ALA* 3.4 31.9 - - + +
417G ILE* 4.1 18.6 - - + -
418G CYS* 5.4 0.2 - - - -
1204G PHE* 3.0 27.3 + - + +
1205G ALA* 3.8 7.9 - - - +
1207G THR* 1.3 80.5 - - - +
1209G GLU* 1.3 62.4 + - - +
1210G GLY 3.3 1.0 + - - -
1211G LEU* 3.4 20.9 + - + +
----------------------------------------------------------
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Residues in contact with GLU1209 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414G ALA* 3.4 26.1 - - + +
778G TRP* 4.6 10.3 - - + +
1205G ALA* 3.0 22.2 + - + +
1206G GLU* 2.9 8.9 + - - +
1208G VAL* 1.3 76.8 - - - +
1210G GLY* 1.3 57.9 + - - +
1211G LEU 3.9 0.5 + - - -
----------------------------------------------------------
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Residues in contact with GLY1210 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
778G TRP* 4.5 11.7 - - - -
1206G GLU 3.0 12.2 + - - -
1207G THR 4.0 3.1 - - - -
1209G GLU* 1.3 78.8 - - - +
1211G LEU* 1.3 61.9 + - - -
1212G THR 3.5 2.0 - - - -
1213G THR* 3.3 18.3 + - - -
1214G ILE* 3.1 30.7 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il