Contacts of the helix formed by residues 1163 - 1210 (chain H) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL1163 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1162H PRO* 1.3 85.6 - - + +
1164H PHE* 1.3 64.4 + - - +
1165H LEU* 3.1 3.0 + - - -
1166H VAL* 3.6 23.0 + - + +
1167H ALA* 4.4 1.9 + - - +
1266H THR* 3.8 25.1 - - + +
1270H ASN* 5.0 4.3 - - - +
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Residues in contact with PHE1164 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1154H LEU* 4.7 6.7 - - + -
1157H ILE* 3.6 24.5 - - + -
1158H SER* 5.0 2.7 - - - -
1161H THR* 3.2 30.6 + - - +
1162H PRO 3.1 1.2 - - - -
1163H VAL* 1.3 79.4 - - - +
1165H LEU* 1.3 60.3 + - + +
1166H VAL 3.2 0.2 - - - -
1167H ALA* 3.0 9.8 + - + -
1168H LEU* 2.9 57.7 + - + -
1171H LEU* 5.8 0.4 - - + -
1259H VAL* 3.8 38.4 - - + -
1262H ILE* 3.6 36.6 - - + -
1263H ALA* 4.1 12.8 - - + -
1266H THR* 5.2 4.3 - - + -
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Residues in contact with LEU1165 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1158H SER* 3.7 32.1 - - - +
1162H PRO* 3.3 21.5 - - + +
1163H VAL 3.1 0.6 - - - -
1164H PHE* 1.3 78.5 - - + +
1166H VAL* 1.3 58.3 + - + +
1168H LEU* 3.4 26.0 - - + +
1169H LEU* 3.0 31.4 + - - +
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Residues in contact with VAL1166 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1163H VAL* 3.9 18.6 - - + +
1164H PHE 3.2 0.6 - - - -
1165H LEU* 1.3 79.5 - - + +
1167H ALA* 1.3 61.2 + - - +
1169H LEU* 3.8 5.4 + - - +
1170H PRO* 3.3 17.5 - - - +
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Residues in contact with ALA1167 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1163H VAL 4.4 1.7 + - - +
1164H PHE* 3.0 12.0 + - + +
1166H VAL* 1.3 78.1 - - - +
1168H LEU* 1.3 64.1 + - - +
1170H PRO* 3.3 12.7 - - - +
1171H LEU* 3.3 19.1 - - - +
1262H ILE* 3.8 39.7 - - + -
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Residues in contact with LEU1168 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1154H LEU* 3.8 43.5 - - + +
1164H PHE* 2.9 33.6 + - + +
1165H LEU* 3.1 32.9 + - + +
1167H ALA* 1.3 78.8 - - - +
1169H LEU* 1.3 57.8 + - - +
1171H LEU* 3.3 8.1 + - + +
1172H ALA* 2.9 33.8 + - + +
1259H VAL* 5.2 7.6 - - + -
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Residues in contact with LEU1169 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1165H LEU 3.0 15.5 + - - +
1166H VAL* 4.1 4.7 - - - +
1168H LEU* 1.3 75.6 - - - +
1170H PRO* 1.3 68.6 - - + +
1172H ALA* 3.1 10.4 + - + +
1173H VAL* 3.0 31.6 + - + +
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Residues in contact with PRO1170 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1166H VAL 3.3 14.6 - - - +
1167H ALA* 3.3 16.4 - - - +
1169H LEU* 1.3 92.5 - - + +
1171H LEU* 1.3 59.9 + - + +
1173H VAL* 3.1 11.3 + - + +
1174H VAL* 2.9 34.8 + - + +
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Residues in contact with LEU1171 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1164H PHE* 5.8 0.4 - - + -
1167H ALA* 3.3 21.5 - - + +
1168H LEU* 3.6 10.1 - - + +
1169H LEU 3.3 0.4 - - - -
1170H PRO* 1.3 78.6 - - + +
1172H ALA* 1.3 60.0 + - - +
1174H VAL* 3.3 10.2 + - + +
1175H CYS* 2.9 35.4 + - - -
1255H ILE* 4.1 26.8 - - + +
1258H CYS* 4.3 22.0 - - + -
1259H VAL* 3.7 28.9 - - + -
1262H ILE* 4.6 7.2 - - + -
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Residues in contact with ALA1172 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1168H LEU* 2.9 21.3 + - + +
1169H LEU* 3.1 14.1 + - + +
1171H LEU* 1.3 77.1 - - - +
1173H VAL* 1.3 56.3 + - + +
1175H CYS* 3.4 7.7 + - - +
1176H TYR* 2.9 28.8 + - - +
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Residues in contact with VAL1173 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1169H LEU* 3.0 23.8 + - + +
1170H PRO* 3.1 13.7 + - + +
1172H ALA* 1.3 77.5 - - + +
1174H VAL* 1.3 59.8 + - + +
1176H TYR* 3.2 10.2 + - + +
1177H PHE* 3.0 54.3 + - + -
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Residues in contact with VAL1174 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1170H PRO* 2.9 22.1 + - + +
1171H LEU* 3.7 12.3 - - + +
1173H VAL* 1.3 77.7 - - + +
1175H CYS* 1.3 58.0 + - - +
1177H PHE* 3.2 11.7 + - + +
1178H ILE* 2.9 39.7 + - + +
1255H ILE* 4.0 20.4 - - + -
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Residues in contact with CYS1175 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1171H LEU 2.9 24.8 + - - +
1172H ALA* 3.7 8.1 - - - +
1174H VAL* 1.3 75.8 - - - +
1176H TYR* 1.3 56.9 + - - +
1178H ILE* 3.9 7.1 - - - +
1179H GLN* 2.8 35.0 + - - +
1252H MET* 6.1 1.6 - - - -
1255H ILE* 3.7 32.1 - - - -
1295H LEU* 4.5 25.1 - - + -
1299H VAL* 5.9 0.5 - - - +
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Residues in contact with TYR1176 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1172H ALA 2.9 14.7 + - - +
1173H VAL* 3.2 12.1 + - + +
1175H CYS* 1.3 75.9 - - - +
1177H PHE* 1.3 80.2 + + - +
1179H GLN* 3.3 19.7 + - - +
1180H LYS* 3.0 71.5 + - + +
1183H ARG* 5.8 0.9 - - - -
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Residues in contact with PHE1177 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1173H VAL* 3.0 35.4 + - + -
1174H VAL* 3.2 11.6 + - + +
1176H TYR* 1.3 101.8 - + - +
1178H ILE* 1.3 67.5 + - + +
1180H LYS* 3.3 11.8 + - + +
1181H TYR* 3.0 45.6 + + + -
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Residues in contact with ILE1178 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1174H VAL* 2.9 32.3 + - + +
1175H CYS* 3.9 5.4 - - - +
1177H PHE* 1.3 76.2 - - + +
1179H GLN* 1.3 56.4 + - - +
1181H TYR* 3.1 8.1 + - + +
1182H PHE* 2.7 33.5 + - + +
1247H TRP* 4.8 20.8 - - + -
1248H LEU* 3.7 31.0 - - + -
1251H CYS* 3.6 32.5 - - + -
1252H MET* 5.2 1.6 - - + +
1255H ILE* 4.5 11.7 - - + -
1299H VAL* 6.1 0.4 - - + -
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Residues in contact with GLN1179 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1175H CYS* 2.8 22.5 + - - +
1176H TYR* 3.3 23.2 - - - +
1178H ILE* 1.3 80.2 - - - +
1180H LYS* 1.3 63.6 + - + +
1182H PHE* 3.9 3.8 - - - +
1183H ARG* 3.0 42.5 + - + +
1299H VAL* 4.8 22.6 - - + +
1302H LEU* 3.4 28.5 - - + +
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Residues in contact with LYS1180 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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241H HIS* 4.9 17.7 - - + -
1176H TYR* 3.0 61.8 + - + +
1177H PHE* 3.7 13.2 - - + +
1179H GLN* 1.3 74.8 - - + +
1181H TYR* 1.3 72.4 + - + +
1183H ARG* 3.3 30.1 + - - +
1184H VAL* 3.1 29.5 + - + +
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Residues in contact with TYR1181 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
237H ILE* 4.2 32.3 - - + +
238H LYS* 5.0 16.4 - - + +
241H HIS* 3.4 54.7 + + + +
1177H PHE* 3.0 38.3 + + + +
1178H ILE* 3.7 7.0 - - + +
1180H LYS* 1.3 77.3 - - + +
1182H PHE* 1.3 68.3 + - - +
1184H VAL* 3.4 6.0 + - - +
1185H ALA* 3.0 24.8 + - - +
1247H TRP* 4.7 7.4 - + + -
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Residues in contact with PHE1182 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1178H ILE 2.7 19.8 + - - +
1179H GLN 3.9 2.2 - - - +
1181H TYR* 1.3 74.0 - - - +
1183H ARG* 1.3 58.1 + - + +
1185H ALA* 3.1 5.4 + - + -
1186H SER* 2.7 56.4 + - - -
1244H ALA* 4.0 15.5 - - + -
1245H ASN* 3.8 26.0 - - - -
1247H TRP* 4.6 12.7 - + + -
1248H LEU* 3.4 55.6 - - + -
1299H VAL* 3.6 15.5 - - + -
1300H ARG* 4.7 10.5 - - + -
1303H ALA* 3.6 24.9 - - + -
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Residues in contact with ARG1183 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1176H TYR* 5.8 0.6 - - - -
1179H GLN* 3.0 30.4 + - + +
1180H LYS* 3.3 38.7 + - - +
1182H PHE* 1.3 81.6 - - + +
1184H VAL* 1.3 66.0 + - + +
1186H SER* 3.9 0.3 - - - -
1187H ARG* 3.0 32.6 + - - +
1299H VAL* 5.4 2.5 - - + -
1302H LEU* 3.7 29.9 - - + +
1303H ALA* 4.3 18.6 - - + +
1306H GLU* 3.2 43.1 + - - +
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Residues in contact with VAL1184 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240H ALA* 3.5 29.8 - - + +
241H HIS* 4.2 22.0 - - + +
1180H LYS* 3.1 15.0 + - + +
1181H TYR* 3.7 7.6 - - - +
1182H PHE 3.2 0.2 - - - -
1183H ARG* 1.3 80.7 - - + +
1185H ALA* 1.3 63.9 + - - +
1187H ARG* 3.8 6.7 - - - +
1188H ASP* 3.1 36.9 + - - +
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Residues in contact with ALA1185 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236H PHE* 5.3 3.8 - - + -
237H ILE* 3.9 25.4 - - + -
240H ALA* 4.5 13.0 - - + -
1181H TYR 3.0 16.4 + - - +
1182H PHE* 3.8 4.9 - - + +
1184H VAL* 1.3 78.8 - - - +
1186H SER* 1.3 56.4 + - - +
1188H ASP* 3.4 6.9 + - - +
1189H LEU* 2.9 44.3 + - + +
1244H ALA* 5.4 5.8 - - + -
1247H TRP* 6.2 0.2 - - + -
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Residues in contact with SER1186 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1182H PHE* 2.7 55.0 + - - -
1183H ARG 3.9 2.9 - - - -
1185H ALA* 1.3 71.7 - - - +
1187H ARG* 1.3 59.9 + - - +
1189H LEU* 4.8 4.5 - - - -
1190H GLN* 2.9 35.4 + - - +
1241H LEU* 4.3 5.1 - - - +
1244H ALA* 5.7 2.5 - - - -
1245H ASN* 4.7 4.6 + - - +
1303H ALA* 4.0 11.0 - - - +
1307H ILE* 4.6 5.1 - - - +
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Residues in contact with ARG1187 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1183H ARG* 3.0 22.5 + - - +
1184H VAL* 3.8 5.6 - - - +
1186H SER* 1.3 75.4 - - - +
1188H ASP* 1.3 68.6 + - - +
1190H GLN* 3.9 0.5 - - - +
1191H GLN* 3.0 27.7 + - - +
1303H ALA 4.7 4.5 - - - +
1306H GLU* 3.1 53.0 + - - +
1307H ILE* 3.7 29.6 - - + +
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Residues in contact with ASP1188 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240H ALA* 4.4 3.1 - - - +
244H PRO* 5.2 2.4 - - - +
245H ILE* 3.6 40.5 + - + +
1184H VAL* 3.1 32.5 + - - +
1185H ALA* 3.7 6.4 - - - +
1187H ARG* 1.3 79.2 - - - +
1189H LEU* 1.3 59.9 + - + +
1191H GLN* 3.9 2.7 - - - +
1192H LEU* 2.9 31.2 + - - +
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Residues in contact with LEU1189 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233H MET* 6.1 0.4 - - - -
236H PHE* 4.9 15.0 - - + -
245H ILE* 5.3 4.7 - - + -
250H ILE* 4.5 19.3 - - + -
1185H ALA* 2.9 25.1 + - + +
1186H SER* 4.3 0.7 - - - +
1188H ASP* 1.3 79.0 - - + +
1190H GLN* 1.3 57.0 + - - +
1192H LEU* 3.2 8.4 + - + +
1193H ASP* 2.8 32.4 + - - +
1237H ALA* 5.0 6.7 - - - +
1240H PHE* 3.5 50.5 - - + +
1241H LEU* 3.4 17.0 - - + +
1244H ALA* 3.7 18.4 - - + -
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Residues in contact with GLN1190 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1186H SER* 2.9 22.2 + - - +
1189H LEU* 1.3 77.4 - - - +
1191H GLN* 1.3 63.0 + - - +
1193H ASP* 3.3 4.5 + - - +
1194H ASP* 2.9 61.7 + - - +
1241H LEU* 3.2 32.9 - - + +
1307H ILE* 3.7 30.1 - - + -
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Residues in contact with GLN1191 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1187H ARG 3.0 18.2 + - - +
1188H ASP* 4.0 3.4 - - - +
1190H GLN* 1.3 77.7 - - - +
1192H LEU* 1.3 58.2 + - - +
1194H ASP* 3.4 12.5 + - - +
1195H THR* 3.0 50.0 + - + +
1307H ILE* 5.2 10.2 - - - +
----------------------------------------------------------
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Residues in contact with LEU1192 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
245H ILE* 4.6 13.0 - - + +
246H ASP* 4.6 1.3 - - - -
247H LEU* 4.4 29.2 - - + +
250H ILE* 3.7 33.4 - - + -
1188H ASP 2.9 19.1 + - - +
1189H LEU* 3.7 9.2 - - + +
1191H GLN* 1.3 78.9 - - - +
1193H ASP* 1.3 51.7 + - - +
1195H THR* 2.7 21.9 + - - +
1196H THR* 2.2 36.7 + - - +
1237H ALA* 4.8 8.1 - - + -
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Residues in contact with ASP1193 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1189H LEU 2.8 17.4 + - - +
1190H GLN* 3.7 8.4 + - - +
1192H LEU* 1.3 77.3 - - - +
1194H ASP* 1.3 71.7 + - - +
1196H THR* 3.5 4.7 - - - -
1197H GLN* 3.0 29.6 + - - +
1234H ASN* 3.7 9.8 - - - +
1237H ALA* 3.7 14.7 - - + +
1238H SER* 2.8 38.6 + - - -
1241H LEU* 5.0 11.4 - - + +
2001H GBM 5.1 4.5 - - - +
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Residues in contact with ASP1194 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1190H GLN* 2.9 46.1 + - - +
1191H GLN* 3.7 16.1 - - - +
1193H ASP* 1.3 84.0 - - - +
1195H THR* 1.3 61.1 + - - +
1197H GLN* 3.2 31.9 + - - +
1198H LEU* 4.0 4.3 + - - +
1307H ILE* 6.0 0.9 - - - +
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Residues in contact with THR1195 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1191H GLN* 3.0 33.1 + - + +
1192H LEU* 2.7 34.3 + - - +
1194H ASP* 1.3 76.4 - - - +
1196H THR* 1.3 61.1 + - - +
1197H GLN 3.5 0.2 - - - -
1198H LEU* 3.8 6.5 + - - +
1199H PRO* 3.2 20.1 - - - +
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Residues in contact with THR1196 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247H LEU* 4.9 10.2 - - + +
1192H LEU* 2.2 37.7 + - - +
1193H ASP* 3.0 8.8 + - - -
1195H THR* 1.3 77.7 + - - +
1197H GLN* 1.3 66.9 + - - +
1198H LEU 3.2 0.9 + - - -
1199H PRO* 3.3 11.8 - - - +
1200H LEU* 4.3 5.7 + - - +
1230H TYR* 4.9 4.0 - - - +
1233H SER* 3.5 46.0 - - - +
1234H ASN* 3.5 8.7 - - - +
1237H ALA* 4.1 5.0 - - + +
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Residues in contact with GLN1197 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1193H ASP* 3.0 17.2 + - - +
1194H ASP* 3.2 27.1 + - - +
1196H THR* 1.3 76.7 - - - +
1198H LEU* 1.3 80.6 + - - +
1199H PRO 3.6 0.2 - - - -
1200H LEU* 3.4 17.8 - - - +
1201H VAL* 3.6 17.7 + - - +
1234H ASN* 3.5 29.5 + - - +
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Residues in contact with LEU1198 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1194H ASP 4.2 3.6 - - - +
1195H THR* 3.8 8.0 + - - +
1196H THR 3.2 2.0 - - - -
1197H GLN* 1.3 93.0 - - - +
1199H PRO* 1.3 65.9 - - + +
1200H LEU 3.1 1.8 - - - -
1201H VAL* 3.2 21.0 - - + +
1202H SER* 2.8 37.0 + - - +
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Residues in contact with PRO1199 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1195H THR 3.2 19.7 - - - +
1196H THR* 3.3 10.3 - - - +
1198H LEU* 1.3 89.1 - - + +
1200H LEU* 1.3 54.2 + - - +
1202H SER* 3.6 10.3 - - - +
1203H HIS* 2.9 31.5 + - - +
1230H TYR* 3.8 25.3 - - + +
----------------------------------------------------------
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Residues in contact with LEU1200 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392H GLN* 3.6 31.4 - - + +
421H VAL* 4.8 9.0 - - + -
1196H THR 4.3 4.1 + - - +
1197H GLN* 3.4 13.9 + - - +
1198H LEU 3.1 0.4 - - - -
1199H PRO* 1.3 79.3 - - - +
1201H VAL* 1.3 72.8 + - + +
1203H HIS* 3.7 2.1 - - - +
1204H PHE* 2.9 31.8 + - + +
1227H LEU* 4.0 16.4 - - + +
1230H TYR* 3.8 18.0 - - + +
1231H THR* 3.5 41.7 - - - +
1234H ASN* 4.6 12.1 - - - +
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Residues in contact with VAL1201 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418H CYS* 4.8 6.5 - - + +
421H VAL* 5.3 5.6 - - + -
422H ALA* 4.5 24.2 - - + -
1197H GLN* 3.6 17.7 + - - +
1198H LEU* 3.2 33.0 + - + +
1200H LEU* 1.3 89.8 - - + +
1202H SER* 1.3 56.8 + - - +
1204H PHE* 3.5 10.6 - - + +
1205H ALA* 2.9 31.0 + - - +
----------------------------------------------------------
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Residues in contact with SER1202 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
781H ASN* 6.0 5.2 - - - -
1198H LEU* 2.8 33.9 + - - +
1199H PRO* 3.6 9.9 - - - +
1200H LEU 3.2 0.2 - - - -
1201H VAL* 1.3 77.3 - - - +
1203H HIS* 1.3 56.7 + - - +
1204H PHE 3.3 0.2 + - - -
1205H ALA* 3.3 6.0 + - - +
1206H GLU* 3.0 37.4 + - - +
----------------------------------------------------------
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Residues in contact with HIS1203 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396H TYR* 4.4 5.0 - + - -
1199H PRO 2.9 21.9 + - - +
1200H LEU 3.8 1.6 - - - +
1202H SER* 1.3 72.7 - - - +
1204H PHE* 1.3 53.9 + - - +
1206H GLU* 3.5 17.3 + - - +
1207H THR* 2.2 55.8 + - - -
1223H PHE* 3.4 53.6 + + + +
1226H LYS* 4.2 10.4 - - + +
1227H LEU* 3.8 31.4 + - + +
1230H TYR* 3.5 19.3 - + + -
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Residues in contact with PHE1204 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392H GLN 5.5 1.3 - - - -
395H ILE* 4.0 7.9 - - + -
396H TYR* 4.9 17.3 - + + -
399H ILE* 3.6 32.1 - - + -
417H ILE* 3.6 35.7 - - + -
418H CYS* 3.9 15.7 - - - -
421H VAL* 3.5 33.7 - - + -
1200H LEU* 2.9 22.4 + - + +
1201H VAL* 3.5 12.1 - - + +
1202H SER 3.1 0.2 - - - -
1203H HIS* 1.3 79.6 - - - +
1205H ALA* 1.3 58.7 + - - +
1207H THR* 3.1 6.9 + - - -
1208H VAL* 3.0 37.3 + - + +
1227H LEU* 5.1 10.8 - - + -
----------------------------------------------------------
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Residues in contact with ALA1205 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414H ALA* 5.6 0.6 - - - +
418H CYS* 3.5 26.7 - - - -
1201H VAL 2.9 17.4 + - - +
1202H SER* 3.8 4.7 - - - +
1204H PHE* 1.3 76.6 - - - +
1206H GLU* 1.3 62.2 + - - +
1208H VAL* 3.3 4.8 + - - +
1209H GLU* 3.0 31.1 + - + +
----------------------------------------------------------
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Residues in contact with GLU1206 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
779H LEU 5.1 3.4 - - - +
780H LEU* 3.5 18.6 - - - +
781H ASN* 2.6 48.5 + - + +
1202H SER* 3.0 21.9 + - - +
1203H HIS* 3.7 18.4 + - - +
1205H ALA* 1.3 77.0 - - - +
1207H THR* 1.3 56.9 + - - +
1209H GLU* 2.9 21.6 + - - +
1210H GLY* 3.0 14.2 + - - -
1214H ILE* 5.0 1.3 - - - +
----------------------------------------------------------
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Residues in contact with THR1207 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396H TYR* 3.6 33.0 - - + +
399H ILE* 4.8 3.7 - - + +
400H MET* 3.8 15.5 - - + -
1203H HIS* 2.2 49.4 + - + +
1204H PHE* 3.6 7.2 - - - -
1206H GLU* 1.3 76.2 - - - +
1208H VAL* 1.3 63.3 + - - +
1210H GLY 4.0 1.0 - - - -
1211H LEU* 3.6 23.2 + - - +
1214H ILE* 4.2 20.5 - - + +
1223H PHE* 4.8 1.7 - - + -
----------------------------------------------------------
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Residues in contact with VAL1208 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399H ILE* 4.0 31.2 - - + -
414H ALA* 3.4 30.7 - - + +
417H ILE* 4.1 18.8 - - + -
418H CYS* 5.4 0.4 - - - -
1204H PHE* 3.0 28.2 + - + +
1205H ALA* 3.8 7.9 - - - +
1207H THR* 1.3 79.3 - - - +
1209H GLU* 1.3 61.9 + - - +
1210H GLY 3.3 1.0 + - - -
1211H LEU* 3.4 20.0 + - + +
----------------------------------------------------------
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Residues in contact with GLU1209 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414H ALA* 3.4 26.0 - - - +
778H TRP* 4.6 9.5 - - + +
1205H ALA* 3.0 21.9 + - + +
1206H GLU* 2.9 9.1 + - - +
1208H VAL* 1.3 76.5 - - - +
1210H GLY* 1.3 57.5 + - - +
1211H LEU 3.5 0.8 + - - -
----------------------------------------------------------
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Residues in contact with GLY1210 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
778H TRP* 4.5 12.1 - - - -
1206H GLU 3.0 11.7 + - - -
1207H THR 4.0 3.1 - - - -
1209H GLU* 1.3 78.8 - - - +
1211H LEU* 1.3 62.3 + - - +
1212H THR 3.5 2.0 - - - -
1213H THR* 3.3 17.1 + - - -
1214H ILE* 3.1 30.4 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il