Contacts of the helix formed by residues 1219 - 1272 (chain E) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TYR1219 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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770E VAL 5.3 3.5 + - - -
790E PHE* 4.3 20.9 - - + -
791E GLU* 5.3 6.1 - - + -
846E GLN* 4.5 19.0 + - + +
1214E ILE* 3.1 18.0 + - + +
1217E PHE* 3.3 50.5 - + + -
1218E ARG* 1.3 81.3 - - - +
1220E GLU* 1.3 63.8 + - - +
1221E ALA* 3.2 3.6 - - - -
1222E ARG* 3.1 52.1 + - + +
1223E PHE* 3.5 13.8 + + + -
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Residues in contact with GLU1220 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396E TYR* 3.7 2.3 + - - -
400E MET* 3.4 35.7 - - + +
1214E ILE* 3.8 17.2 - - + +
1215E ARG* 4.5 8.4 - - + +
1218E ARG* 3.3 35.4 - - - +
1219E TYR* 1.3 71.1 - - - +
1221E ALA* 1.3 64.6 + - + +
1223E PHE* 3.7 2.9 - - - +
1224E GLN* 2.8 38.4 + - - +
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Residues in contact with ALA1221 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1218E ARG 5.3 0.8 + - - +
1219E TYR 3.2 1.2 - - - -
1220E GLU* 1.3 82.0 - - + +
1222E ARG* 1.3 61.8 + - + +
1224E GLN* 3.4 18.5 - - - +
1225E GLN* 3.0 28.1 + - - +
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Residues in contact with ARG1222 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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791E GLU* 3.7 41.2 + - + +
1219E TYR* 3.1 43.2 + - - +
1221E ALA* 1.3 78.7 - - + +
1223E PHE* 1.3 68.4 + - + +
1225E GLN* 3.2 8.8 + - - +
1226E LYS* 2.9 32.8 + - - +
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Residues in contact with PHE1223 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396E TYR* 2.9 20.4 + - - +
790E PHE 6.3 0.7 - - - -
791E GLU* 5.0 10.3 - - + -
1203E HIS* 3.4 24.1 + + + -
1207E THR* 4.8 2.7 - - + -
1214E ILE* 3.6 52.0 - - + -
1219E TYR* 3.5 14.3 + + + -
1220E GLU* 3.3 5.6 + - - +
1221E ALA 3.2 0.4 - - - -
1222E ARG* 1.3 81.5 - - + +
1224E GLN* 1.3 60.1 + - - +
1226E LYS* 3.3 41.1 - - + +
1227E LEU* 2.9 26.0 + - - +
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Residues in contact with GLN1224 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396E TYR* 3.0 27.6 + - + -
397E ASN* 3.2 21.8 + - - +
400E MET* 4.6 8.4 - - + +
1220E GLU* 2.8 25.8 + - - +
1221E ALA* 3.4 20.1 - - - +
1223E PHE* 1.3 76.4 - - - +
1225E GLN* 1.3 57.1 + - - +
1227E LEU* 3.3 2.8 + - - +
1228E LEU* 2.9 39.1 + - + +
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Residues in contact with GLN1225 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1221E ALA 3.0 14.5 + - - +
1222E ARG* 3.2 12.1 + - - +
1224E GLN* 1.3 74.4 - - - +
1226E LYS* 1.3 60.5 - - + +
1228E LEU* 3.2 23.2 + - - +
1229E GLU* 2.9 51.7 + - - +
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Residues in contact with LYS1226 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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791E GLU* 4.5 16.1 - - - +
1203E HIS* 4.2 12.6 - - + +
1222E ARG* 2.9 19.5 + - - +
1223E PHE* 3.3 41.2 + - + +
1224E GLN 3.3 0.2 - - - -
1225E GLN* 1.3 74.8 - - + +
1227E LEU* 1.3 61.1 + - - +
1229E GLU* 3.2 18.4 + - - +
1230E TYR* 2.9 47.6 + - + +
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Residues in contact with LEU1227 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392E GLN* 4.2 14.4 - - + +
393E THR* 5.0 3.6 - - - +
396E TYR* 3.4 43.3 - - + -
1200E LEU* 4.0 32.1 - - + +
1203E HIS* 3.8 24.6 + - + +
1204E PHE* 5.1 10.8 - - + -
1223E PHE 2.9 18.6 + - - +
1224E GLN* 3.8 4.7 - - - +
1226E LYS* 1.3 73.4 - - - +
1228E LEU* 1.3 58.2 + - - +
1230E TYR* 4.4 3.4 - - + -
1231E THR* 2.5 45.1 + - - +
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Residues in contact with LEU1228 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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259E ALA* 3.4 30.7 - - + +
260E LEU* 3.9 33.2 - - + +
393E THR* 4.3 14.8 - - + +
1224E GLN* 2.9 23.6 + - + +
1225E GLN* 3.2 31.4 + - - +
1227E LEU* 1.3 76.3 - - + +
1229E GLU* 1.3 56.5 + - - +
1231E THR* 3.8 2.4 - - - -
1232E ASP* 2.9 40.1 + - - +
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Residues in contact with GLU1229 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1225E GLN* 2.9 40.2 + - - +
1226E LYS* 3.2 20.4 + - - +
1228E LEU* 1.3 76.3 - - - +
1230E TYR* 1.3 62.5 + - + +
1232E ASP* 3.7 5.5 - - - +
1233E SER* 2.7 39.2 + - - +
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Residues in contact with TYR1230 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1196E THR* 4.8 4.9 - - - +
1199E PRO* 3.8 31.5 - - + +
1200E LEU* 3.8 26.0 - - + +
1203E HIS* 3.5 37.7 - + + -
1226E LYS* 2.9 33.7 + - + +
1227E LEU* 3.8 4.7 - - + +
1229E GLU* 1.3 82.9 - - + +
1231E THR* 1.3 56.4 + - - +
1233E SER* 3.3 8.9 + - - -
1234E ASN* 2.9 28.4 + - - +
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Residues in contact with THR1231 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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259E ALA* 4.2 12.6 - - + -
388E ARG* 5.7 0.9 - - - +
389E GLY* 3.6 27.6 - - - +
392E GLN* 3.2 23.2 + - + +
393E THR* 5.2 1.5 + - - +
1200E LEU* 3.5 16.4 - - - +
1227E LEU* 2.5 32.6 + - - +
1228E LEU* 3.8 5.4 - - - -
1230E TYR* 1.3 74.0 - - - +
1232E ASP* 1.3 67.1 + - - +
1234E ASN* 3.2 4.0 + - + +
1235E ASN* 2.9 32.2 + - - +
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Residues in contact with ASP1232 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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253E LEU* 4.0 17.6 + - + +
257E MET 4.9 4.3 - - - +
258E ARG* 4.7 13.2 + - - +
259E ALA* 3.7 28.4 + - - +
1228E LEU* 2.9 24.8 + - - +
1229E GLU* 3.7 5.6 - - - +
1231E THR* 1.3 75.0 - - - +
1233E SER* 1.3 59.4 + - - +
1235E ASN* 2.8 11.1 + - - +
1236E ILE* 2.8 30.8 + - - +
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Residues in contact with SER1233 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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247E LEU* 5.0 17.1 - - - +
1196E THR* 3.5 16.4 - - - +
1229E GLU* 2.7 23.1 + - - +
1230E TYR* 3.4 10.4 - - - -
1232E ASP* 1.3 75.7 - - - +
1234E ASN* 1.3 57.1 + - - +
1236E ILE* 3.2 12.2 - - - +
1237E ALA* 2.9 31.0 + - - +
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Residues in contact with ASN1234 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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388E ARG* 2.8 36.4 + - - +
392E GLN* 5.1 2.8 - - - +
1193E ASP* 3.7 5.8 - - - +
1196E THR* 3.5 12.1 - - + +
1197E GLN* 3.5 33.0 + - - +
1200E LEU* 4.6 13.2 - - + +
1230E TYR 2.9 14.1 + - - +
1231E THR* 3.2 9.8 + - - +
1233E SER* 1.3 76.0 - - - +
1235E ASN* 1.3 58.1 + - - +
1237E ALA* 3.7 2.0 - - - +
1238E SER* 2.9 31.2 + - - -
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Residues in contact with ASN1235 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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253E LEU* 3.3 21.2 - - + +
257E MET 6.0 0.4 - - - -
258E ARG 5.6 0.4 - - - -
259E ALA 5.2 5.7 - - - +
262E ASN* 5.5 1.6 - - - +
385E ILE* 3.4 33.1 + - + +
386E ASN* 5.0 5.3 + - - +
388E ARG* 2.6 36.8 + - - +
389E GLY* 4.4 12.4 + - - -
1231E THR* 2.9 21.7 + - - +
1232E ASP* 2.8 13.7 + - - +
1234E ASN* 1.3 72.4 - - - +
1236E ILE* 1.3 55.4 + - - +
1237E ALA 3.0 1.6 - - - -
1238E SER* 2.9 4.0 + - - -
1239E LEU* 2.6 39.0 + - - +
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Residues in contact with ILE1236 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217E PHE* 3.5 21.5 - - + -
250E ILE* 3.8 8.3 - - + -
251E ALA* 3.7 31.4 - - + +
252E LYS* 5.4 0.7 - - - -
253E LEU* 3.4 35.7 - - + +
1232E ASP 2.8 16.7 + - - +
1233E SER* 3.2 18.4 - - - +
1235E ASN* 1.3 73.2 - - - +
1237E ALA* 1.3 66.9 + - + +
1239E LEU* 4.1 0.9 - - - -
1240E PHE* 3.1 53.1 + - + -
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Residues in contact with ALA1237 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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250E ILE* 5.4 2.9 - - - -
1189E LEU* 5.0 7.1 - - - +
1192E LEU* 4.8 7.4 - - + +
1193E ASP* 3.7 30.9 - - + +
1196E THR* 4.1 12.1 - - + +
1233E SER 2.9 19.6 + - - +
1234E ASN 3.7 4.5 - - - +
1236E ILE* 1.3 81.7 - - + +
1238E SER* 1.3 62.3 + - - +
1240E PHE* 3.9 4.5 - - - +
1241E LEU* 3.1 21.7 + - - +
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Residues in contact with SER1238 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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385E ILE* 4.1 12.8 - - - -
388E ARG* 3.9 9.2 + - - -
429E MET* 4.7 0.7 - - - -
1193E ASP* 2.8 21.5 + - - -
1234E ASN* 2.9 24.1 + - - -
1235E ASN 3.6 2.2 - - - -
1237E ALA* 1.3 74.3 - - - +
1239E LEU* 1.3 58.5 + - - +
1241E LEU* 3.1 4.4 + - - +
1242E THR* 2.8 32.1 + - - -
2001E GBM 3.2 31.2 - - - +
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Residues in contact with LEU1239 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217E PHE* 3.4 46.6 - - + -
253E LEU* 3.2 30.3 - - + -
257E MET* 3.8 17.3 - - + -
378E TYR* 4.7 3.6 - - + -
381E ILE* 5.0 6.3 - - + -
382E GLU* 4.4 19.3 - - + -
385E ILE* 3.4 26.6 - - + +
1235E ASN 2.6 18.0 + - - +
1236E ILE* 3.9 5.2 - - - +
1238E SER* 1.3 71.5 - - - +
1240E PHE* 1.3 53.3 + - - +
1242E THR* 3.2 4.7 + - + +
1243E ALA* 2.7 36.4 + - - +
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Residues in contact with PHE1240 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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215E VAL* 6.1 0.7 - - + -
216E ARG 3.5 19.3 - - - -
217E PHE* 3.9 15.0 - + + -
232E TRP* 3.9 28.0 - + - -
233E MET* 4.7 6.5 - - + +
236E PHE* 4.5 25.4 - + - -
250E ILE* 3.4 35.4 - - + -
251E ALA* 3.8 13.2 - - + -
1189E LEU* 3.5 23.9 - - + +
1236E ILE* 3.1 37.1 + - + +
1237E ALA 3.9 2.0 - - - +
1239E LEU* 1.3 78.8 - - - +
1241E LEU* 1.3 52.8 + - - +
1243E ALA* 3.6 2.3 - - - +
1244E ALA* 2.7 37.2 + - - +
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Residues in contact with LEU1241 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1186E SER* 4.3 7.6 - - - +
1189E LEU* 3.4 19.9 - - + +
1190E GLN* 3.2 58.3 - - + +
1193E ASP* 5.0 10.5 - - + +
1237E ALA 3.1 14.6 + - - +
1238E SER* 3.5 8.5 - - - +
1240E PHE* 1.3 77.3 - - - +
1242E THR* 1.3 62.3 + - - +
1244E ALA* 3.6 0.8 - - + +
1245E ASN* 3.0 41.4 + - - +
2001E GBM 4.1 26.2 - - + +
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Residues in contact with THR1242 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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378E TYR* 4.5 12.6 - - + -
381E ILE* 3.1 49.4 - - + +
1238E SER 2.8 13.1 + - - -
1239E LEU* 3.6 5.4 - - + +
1241E LEU* 1.3 77.5 - - - +
1243E ALA* 1.3 66.5 + - - +
1245E ASN 3.3 0.9 + - - -
1246E ARG* 2.9 35.9 + - + +
2001E GBM 3.0 35.1 + - - +
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Residues in contact with ALA1243 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217E PHE* 3.9 19.3 - - + -
219E GLN* 5.3 2.2 - - - +
230E TYR* 4.7 8.2 - - + -
232E TRP* 4.1 7.9 - - + -
233E MET* 3.4 22.1 - - + +
378E TYR* 5.7 3.6 - - + -
1239E LEU 2.7 21.4 + - - +
1240E PHE* 3.6 3.8 - - - +
1242E THR* 1.3 76.7 - - + +
1244E ALA* 1.3 57.1 + - - +
1246E ARG* 3.2 6.6 + - - +
1247E TRP* 2.9 28.9 + - - +
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Residues in contact with ALA1244 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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233E MET* 3.8 15.8 - - + +
237E ILE* 6.0 0.9 - - + -
1182E PHE* 4.0 10.5 - - + -
1185E ALA* 5.4 8.3 - - + +
1186E SER* 5.7 2.9 - - - -
1189E LEU* 3.7 19.1 - - + -
1240E PHE 2.7 21.8 + - - +
1241E LEU* 3.6 4.3 - - + +
1243E ALA* 1.3 73.6 - - - +
1245E ASN* 1.3 66.8 + - - +
1247E TRP* 3.1 8.8 + - + +
1248E LEU* 3.0 24.1 + - - +
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Residues in contact with ASN1245 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1182E PHE* 3.8 27.6 - - - -
1186E SER* 4.7 5.3 + - - -
1241E LEU* 3.0 28.7 + - - +
1242E THR 3.6 0.4 - - - +
1244E ALA* 1.3 76.7 - - - +
1246E ARG* 1.3 86.4 + - - +
1248E LEU* 3.4 3.4 + - - +
1249E GLU* 2.9 24.9 + - - +
1300E ARG* 5.5 7.7 - - + +
2001E GBM 2.8 33.6 + - - +
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Residues in contact with ARG1246 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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230E TYR* 3.3 35.2 - - + +
374E GLN* 3.4 25.4 + - - -
377E TYR* 3.9 20.4 - - - -
378E TYR* 4.5 6.1 - - + +
381E ILE* 5.3 0.2 - - - +
1242E THR* 2.9 32.8 + - + +
1243E ALA* 3.6 4.0 - - - +
1245E ASN* 1.3 102.3 + - - +
1247E TRP* 1.3 52.5 + - - +
1249E GLU* 3.2 15.6 + - - +
1250E VAL* 2.6 39.5 + - - +
1300E ARG* 5.7 2.2 - - - +
2001E GBM 2.8 53.4 + - - -
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Residues in contact with TRP1247 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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229E THR 3.8 19.0 + - - -
230E TYR* 3.6 20.4 - - + -
233E MET* 3.8 26.5 - - + -
234E ASN* 2.6 30.1 + - - -
237E ILE* 4.0 37.7 - - + -
1178E ILE* 4.8 21.3 - - + -
1181E TYR* 4.7 11.2 - + + -
1182E PHE* 4.6 24.5 - + + -
1243E ALA 2.9 12.9 + - - +
1244E ALA* 3.1 11.8 + - + +
1246E ARG* 1.3 77.7 - - - +
1248E LEU* 1.3 76.0 + - + +
1250E VAL* 3.3 0.7 + - - +
1251E CYS* 3.1 42.9 + - - -
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Residues in contact with LEU1248 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1178E ILE* 3.7 26.0 - - + -
1182E PHE* 3.4 46.7 - - + -
1244E ALA 3.0 8.4 + - - +
1245E ASN* 3.8 3.4 - - - +
1247E TRP* 1.3 85.6 - - + +
1249E GLU* 1.3 67.0 + - - +
1251E CYS* 3.8 3.0 - - - +
1252E MET* 3.0 27.2 + - + +
1296E ASN* 4.9 5.4 - - - +
1299E VAL* 3.4 44.0 - - + -
1300E ARG* 4.8 7.6 - - + +
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Residues in contact with GLU1249 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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373E LEU* 5.8 0.3 - - - +
374E GLN* 3.0 36.3 + - - +
377E TYR* 4.5 7.4 - - - -
1245E ASN 2.9 19.3 + - - +
1246E ARG* 3.5 19.1 - - - +
1248E LEU* 1.3 80.0 - - + +
1250E VAL* 1.3 61.4 + - - +
1252E MET 3.4 0.9 + - - -
1253E GLU* 3.0 33.9 + - - +
1296E ASN* 3.2 40.6 + - + +
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Residues in contact with VAL1250 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228E GLY 3.7 6.3 - - - +
229E THR* 4.1 23.8 - - - +
230E TYR* 3.5 22.4 - - + -
370E ARG* 5.7 1.1 - - - +
371E THR* 5.5 3.6 - - - +
374E GLN* 3.4 28.9 - - + -
1246E ARG 2.6 23.6 + - - +
1247E TRP 3.8 4.3 - - - +
1249E GLU* 1.3 75.7 - - - +
1251E CYS* 1.3 65.1 + - - +
1253E GLU* 3.2 13.5 + - - +
1254E TYR* 3.2 37.1 + - + +
----------------------------------------------------------
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Residues in contact with CYS1251 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229E THR 5.1 2.5 - - - -
234E ASN* 5.0 0.4 - - - -
1178E ILE* 3.6 26.2 - - + -
1247E TRP* 3.1 45.7 + - + +
1248E LEU* 3.9 3.6 - - - +
1250E VAL* 1.3 84.4 - - - +
1252E MET* 1.3 63.5 + - - +
1253E GLU 3.1 0.9 + - - -
1254E TYR* 3.2 22.2 + - - +
1255E ILE* 3.2 19.2 + - + +
----------------------------------------------------------
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Residues in contact with MET1252 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1175E CYS* 6.1 1.3 - - - -
1178E ILE* 5.2 2.4 - - + +
1248E LEU* 3.0 22.1 + - + +
1250E VAL 3.3 0.4 - - - -
1251E CYS* 1.3 76.8 - - - +
1253E GLU* 1.3 59.5 + - - +
1255E ILE* 3.8 6.7 + - - +
1256E GLY* 3.3 14.2 + - - -
1292E SER* 4.6 4.0 - - - +
1295E LEU* 3.8 31.7 - - + +
1296E ASN* 3.2 30.1 - - - +
1299E VAL* 5.9 1.6 - - + -
----------------------------------------------------------
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Residues in contact with GLU1253 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367E LEU* 5.5 0.2 - - - -
370E ARG* 3.2 60.3 + - + +
373E LEU* 5.9 1.7 - - - +
374E GLN* 3.7 6.9 + - - +
1249E GLU* 3.0 32.3 + - - +
1250E VAL* 3.2 7.7 + - - +
1251E CYS 3.1 1.2 - - - -
1252E MET* 1.3 75.8 - - - +
1254E TYR* 1.3 61.0 + - - +
1255E ILE 3.1 1.3 - - - -
1256E GLY* 3.0 2.3 + - - +
1257E ALA* 2.8 29.5 + - - +
1292E SER* 3.7 19.2 + - - +
1293E ASN* 3.9 12.0 - - - +
1296E ASN* 3.2 20.5 + - - +
----------------------------------------------------------
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Residues in contact with TYR1254 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229E THR* 3.2 35.2 + - + +
363E PHE* 5.1 0.9 - - - -
367E LEU* 3.5 34.2 - - + +
370E ARG* 5.5 4.7 - - + -
371E THR* 3.4 25.8 + - - +
1250E VAL* 3.2 28.2 + - + +
1251E CYS* 3.2 14.8 + - - +
1253E GLU* 1.3 76.8 - - + +
1255E ILE* 1.3 60.1 + - + +
1257E ALA* 3.2 3.5 + - - +
1258E CYS* 2.9 27.2 + - - +
----------------------------------------------------------
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Residues in contact with ILE1255 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1171E LEU* 4.1 31.6 - - + -
1174E VAL* 4.0 25.8 - - + -
1175E CYS* 3.7 33.2 - - - -
1178E ILE* 4.5 12.6 - - + -
1251E CYS* 3.2 16.5 + - + +
1252E MET* 4.1 6.5 - - - +
1253E GLU 3.1 1.0 - - - -
1254E TYR* 1.3 77.9 - - + +
1256E GLY* 1.3 57.5 + - - +
1258E CYS* 3.2 6.8 + - - +
1259E VAL* 3.0 31.7 + - + +
1295E LEU* 5.0 5.2 - - + -
----------------------------------------------------------
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Residues in contact with GLY1256 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1252E MET 3.3 9.0 + - - -
1253E GLU 3.0 4.0 + - - -
1255E ILE* 1.3 80.0 - - - +
1257E ALA* 1.3 55.8 + - - +
1259E VAL* 3.2 13.4 - - - +
1260E VAL* 2.9 31.2 + - - +
1288E ALA 4.2 0.7 - - - +
1291E VAL* 4.3 7.2 - - - -
1292E SER* 3.3 25.1 - - - -
1295E LEU* 4.9 3.7 - - - +
----------------------------------------------------------
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Residues in contact with ALA1257 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363E PHE* 3.1 21.3 - - + -
366E LEU* 4.2 21.5 - - + -
367E LEU* 3.7 28.5 - - + -
370E ARG* 6.1 0.9 - - + -
1253E GLU 2.8 14.4 + - - +
1254E TYR 3.6 7.6 - - - +
1256E GLY* 1.3 72.8 - - - +
1258E CYS* 1.3 62.2 + - - +
1260E VAL* 3.3 10.1 + - - +
1261E LEU 3.0 17.8 + - - -
1292E SER* 4.1 0.6 + - - -
----------------------------------------------------------
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Residues in contact with CYS1258 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363E PHE* 3.7 15.0 - - + -
1171E LEU* 4.3 20.0 - - + -
1254E TYR 2.9 14.0 + - - +
1255E ILE* 3.2 11.6 + - - +
1257E ALA* 1.3 77.6 - - - +
1259E VAL* 1.3 57.6 + - - +
1261E LEU* 3.2 5.7 + - - +
1262E ILE* 3.0 53.2 + - - +
----------------------------------------------------------
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Residues in contact with VAL1259 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1154E LEU* 6.3 3.1 - - + -
1157E ILE* 5.8 3.1 - - + +
1164E PHE* 3.8 26.6 - - + -
1168E LEU* 5.2 6.5 - - + -
1171E LEU* 3.7 25.8 - - + -
1255E ILE* 3.0 20.3 + - + +
1256E GLY* 3.2 15.7 - - - +
1258E CYS* 1.3 74.1 - - - +
1260E VAL* 1.3 60.6 + - - +
1262E ILE* 4.4 2.0 - - + +
1263E ALA* 2.9 32.9 + - - +
1288E ALA* 4.6 5.1 - - + +
1291E VAL* 3.8 25.8 - - + -
----------------------------------------------------------
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Residues in contact with VAL1260 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359E ALA* 5.5 1.3 - - - +
362E LEU* 3.9 24.5 - - + -
363E PHE* 5.3 4.3 - - - +
366E LEU* 3.6 32.3 - - + -
1256E GLY 2.9 20.1 + - - +
1257E ALA 3.3 9.4 - - - +
1259E VAL* 1.3 77.0 - - - +
1261E LEU* 1.3 64.2 + - - +
1263E ALA* 3.9 1.4 - - - +
1264E ALA* 3.0 24.6 + - + +
1285E LEU* 4.3 6.2 - - + +
1288E ALA* 3.3 37.9 - - + +
1289E LEU* 4.2 4.0 - - + +
1292E SER* 5.4 0.4 - - - +
----------------------------------------------------------
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Residues in contact with LEU1261 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359E ALA* 4.1 29.6 - - + +
360E VAL* 4.3 15.0 - - + -
363E PHE* 3.6 42.6 - - + -
1257E ALA 3.0 5.9 + - - -
1258E CYS* 3.2 11.0 + - - +
1260E VAL* 1.3 79.4 - - - +
1262E ILE* 1.3 62.5 + - + +
1264E ALA* 3.3 4.0 + - - +
1265E ALA* 3.0 32.4 + - + +
----------------------------------------------------------
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Residues in contact with ILE1262 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1164E PHE* 3.6 27.8 - - + -
1167E ALA* 3.8 27.6 - - + -
1171E LEU* 4.6 7.9 - - + -
1258E CYS* 3.0 37.8 + - - +
1259E VAL* 4.5 0.9 - - - -
1261E LEU* 1.3 81.1 - - + +
1263E ALA* 1.3 58.6 + - - +
1265E ALA* 3.4 5.3 + - - +
1266E THR* 2.9 43.2 + - - +
----------------------------------------------------------
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Residues in contact with ALA1263 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157E ILE* 4.4 24.5 - - + -
1161E THR* 5.1 2.9 - - - +
1164E PHE* 4.1 8.4 - - + -
1259E VAL 2.9 20.2 + - - +
1260E VAL 3.9 2.0 - - - +
1262E ILE* 1.3 78.0 - - - +
1264E ALA* 1.3 56.5 + - - +
1266E THR* 4.1 3.0 - - - -
1267E SER* 2.8 38.6 + - - +
1284E GLY* 5.0 3.8 - - - +
1285E LEU* 4.5 5.6 - - + -
1288E ALA* 4.6 13.0 - - + -
----------------------------------------------------------
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Residues in contact with ALA1264 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323E ILE* 5.0 2.2 - - + -
359E ALA* 3.6 28.3 - - + -
362E LEU* 5.9 1.3 - - + -
1260E VAL* 3.0 21.0 + - + +
1261E LEU 3.7 2.0 - - - +
1263E ALA* 1.3 77.4 - - - +
1265E ALA* 1.3 62.3 + - - +
1267E SER* 3.9 2.1 - - - -
1268E ILE* 3.0 37.9 + - + +
1285E LEU* 3.8 23.4 - - + +
----------------------------------------------------------
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Residues in contact with ALA1265 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356E TYR* 3.5 24.8 + - + -
359E ALA* 5.1 2.6 - - + +
1261E LEU* 3.0 21.7 + - + +
1262E ILE* 3.8 5.6 - - - +
1264E ALA* 1.3 77.5 - - - +
1266E THR* 1.3 58.0 + - - +
1269E SER* 2.9 32.0 + - - -
----------------------------------------------------------
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Residues in contact with THR1266 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1161E THR* 3.8 23.8 - - - -
1163E VAL* 3.8 23.0 - - + +
1164E PHE* 5.0 5.6 - - - +
1262E ILE* 2.9 28.3 + - - +
1263E ALA* 4.1 0.9 - - - -
1265E ALA* 1.3 75.5 - - - +
1267E SER* 1.3 57.9 + - - +
1269E SER* 3.4 6.0 + - - -
1270E ASN* 2.9 50.3 + - - +
----------------------------------------------------------
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Residues in contact with SER1267 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160E VAL* 4.0 8.7 - - - +
1161E THR* 3.0 22.2 - - - +
1263E ALA* 2.8 24.4 + - - +
1264E ALA* 3.9 2.7 - - - -
1266E THR* 1.3 76.5 - - - +
1268E ILE* 1.3 53.8 + - - +
1270E ASN* 3.3 4.4 + - - +
1271E SER* 2.7 38.1 + - - -
1281E VAL* 3.7 33.4 + - - +
1284E GLY* 5.7 2.8 - - - -
1285E LEU* 5.7 1.6 - - - +
----------------------------------------------------------
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Residues in contact with ILE1268 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323E ILE* 3.9 28.0 - - + -
327E LEU* 3.7 27.1 - - + -
355E ALA* 3.5 47.8 - - + +
356E TYR* 3.6 17.5 - - + -
359E ALA* 5.1 0.4 - - + -
1264E ALA* 3.0 23.6 + - + +
1267E SER* 1.3 71.7 - - - +
1269E SER* 1.3 60.1 + - - +
1271E SER* 3.7 5.6 - - - -
1272E LEU* 2.9 46.3 + - + +
1281E VAL* 4.6 4.0 - - + -
1285E LEU* 5.8 0.2 - - + -
----------------------------------------------------------
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Residues in contact with SER1269 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356E TYR* 3.0 23.2 + - - -
1265E ALA 2.9 15.9 + - - -
1266E THR* 3.6 7.0 - - - -
1267E SER 3.3 0.2 - - - -
1268E ILE* 1.3 79.4 - - - +
1270E ASN* 1.3 64.8 + - - +
1272E LEU* 3.7 16.5 + - - +
----------------------------------------------------------
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Residues in contact with ASN1270 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160E VAL 5.3 1.6 + - - +
1161E THR* 4.6 10.1 - - - +
1162E PRO* 5.0 5.7 - - - +
1163E VAL* 5.0 5.1 - - - +
1266E THR* 2.9 43.7 + - - +
1267E SER* 3.9 3.4 - - - +
1269E SER* 1.3 80.1 + - - +
1271E SER* 1.3 65.6 + - - +
1272E LEU 3.2 4.6 + - - -
----------------------------------------------------------
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Residues in contact with SER1271 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327E LEU* 4.0 24.2 - - - -
1267E SER 2.7 23.3 + - - -
1268E ILE 3.7 3.8 - - - -
1270E ASN* 1.3 77.4 - - - +
1272E LEU* 1.3 64.1 + - - +
1277E SER* 3.9 20.3 + - - +
1281E VAL* 3.0 23.0 - - - +
----------------------------------------------------------
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Residues in contact with LEU1272 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326E HIS 5.8 1.6 - - - +
327E LEU* 4.1 17.7 - - + -
355E ALA* 5.5 4.0 - - + -
356E TYR* 4.7 9.2 - - + +
1268E ILE* 2.9 41.5 + - + +
1269E SER* 3.8 15.0 - - - +
1270E ASN 3.2 6.5 - - - -
1271E SER* 1.3 81.9 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il