Contacts of the helix formed by residues 1219 - 1272 (chain F) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TYR1219 (chain F).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
770F VAL 5.3 2.9 + - - -
790F PHE* 4.3 19.9 + - + -
791F GLU* 5.3 6.3 - - + -
846F GLN* 4.5 18.8 + - + +
1214F ILE* 3.1 18.9 + - + +
1217F PHE* 3.3 51.5 - + + -
1218F ARG* 1.3 80.0 - - - +
1220F GLU* 1.3 63.0 + - - +
1221F ALA 3.2 3.6 - - - -
1222F ARG* 3.1 51.3 + - + +
1223F PHE* 3.5 15.0 + + + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU1220 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396F TYR* 3.7 2.3 + - - -
400F MET* 3.4 35.0 - - + +
1214F ILE* 3.8 16.7 - - + +
1215F ARG* 4.5 8.7 - - + +
1218F ARG* 3.3 34.4 - - - +
1219F TYR* 1.3 70.9 + - - +
1221F ALA* 1.3 64.2 + - + +
1223F PHE* 3.7 2.5 - - - +
1224F GLN* 2.8 39.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1221 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1218F ARG 5.3 0.6 + - - +
1219F TYR 3.2 1.0 - - - -
1220F GLU* 1.3 82.2 - - + +
1222F ARG* 1.3 60.6 + - + +
1224F GLN* 3.4 19.1 - - - +
1225F GLN* 3.0 27.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1222 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
791F GLU* 3.7 40.8 + - + +
1219F TYR* 3.3 42.5 - - - +
1221F ALA* 1.3 78.9 - - + +
1223F PHE* 1.3 68.0 + - + +
1225F GLN* 3.2 9.1 + - - +
1226F LYS* 2.9 33.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1223 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396F TYR* 2.9 20.1 + - - +
790F PHE 6.3 0.7 - - - -
791F GLU* 5.0 10.5 - - + -
1203F HIS* 3.4 24.7 + + + -
1207F THR* 4.8 2.5 - - + -
1214F ILE* 3.6 51.8 - - + -
1219F TYR* 3.5 13.2 + + + -
1220F GLU* 3.3 4.9 + - - +
1221F ALA 3.2 0.2 - - - -
1222F ARG* 1.3 82.8 - - + +
1224F GLN* 1.3 60.2 + - - +
1226F LYS* 3.3 41.5 - - + +
1227F LEU* 2.9 25.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN1224 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396F TYR* 3.0 29.2 + - + -
397F ASN* 3.2 21.6 + - - +
400F MET* 4.6 8.6 - - + +
1220F GLU* 2.8 25.5 + - - +
1221F ALA* 3.4 19.8 - - - +
1223F PHE* 1.3 75.9 - - - +
1225F GLN* 1.3 57.8 + - - +
1227F LEU* 3.3 2.4 + - - +
1228F LEU* 2.9 39.7 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN1225 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1221F ALA 3.0 13.4 + - - +
1222F ARG* 3.2 12.8 + - - +
1224F GLN* 1.3 76.0 - - - +
1226F LYS* 1.3 57.2 + - + +
1228F LEU* 3.2 24.5 + - - +
1229F GLU* 2.9 52.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS1226 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
791F GLU* 4.5 16.3 - - - +
1203F HIS* 4.2 11.9 - - + +
1222F ARG* 2.9 20.3 + - - +
1223F PHE* 3.3 40.1 - - + +
1224F GLN 3.3 0.2 - - - -
1225F GLN* 1.3 75.1 - - + +
1227F LEU* 1.3 59.3 + - - +
1229F GLU* 3.2 18.3 + - - +
1230F TYR* 2.9 48.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1227 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392F GLN* 4.2 14.8 - - + +
393F THR* 5.0 2.7 - - - +
396F TYR* 3.4 43.1 - - + -
1200F LEU* 4.0 32.5 - - + +
1203F HIS* 3.8 23.2 + - + +
1204F PHE* 5.1 10.8 - - + -
1223F PHE 2.9 17.6 + - - +
1224F GLN* 3.8 4.7 - - - +
1226F LYS* 1.3 73.8 - - - +
1228F LEU* 1.3 58.6 + - + +
1230F TYR* 4.4 3.1 - - + -
1231F THR* 2.5 44.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1228 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259F ALA* 3.4 30.3 - - + -
260F LEU* 3.9 35.0 - - + +
393F THR* 4.3 15.0 - - + +
1224F GLN* 2.9 23.4 + - + +
1225F GLN* 3.2 31.8 + - - +
1227F LEU* 1.3 78.0 - - - +
1229F GLU* 1.3 57.0 + - - +
1231F THR* 3.8 2.2 - - - -
1232F ASP* 2.9 40.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU1229 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1225F GLN* 2.9 39.0 + - - +
1226F LYS* 3.2 20.8 + - - +
1228F LEU* 1.3 76.3 - - - +
1230F TYR* 1.3 63.5 + - + +
1232F ASP* 3.4 5.2 + - - +
1233F SER* 2.7 38.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR1230 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1196F THR* 4.8 5.0 - - - +
1199F PRO* 3.8 29.1 - - + +
1200F LEU* 3.8 26.0 - - + +
1203F HIS* 3.5 37.2 - + + -
1226F LYS* 2.9 34.0 + - + +
1227F LEU* 3.8 4.0 - - - +
1229F GLU* 1.3 84.0 - - + +
1231F THR* 1.3 58.2 + - - +
1233F SER* 3.3 8.6 + - - -
1234F ASN* 2.9 28.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR1231 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259F ALA* 4.2 13.2 - - + -
388F ARG* 5.7 0.7 - - - +
389F GLY* 3.6 28.5 - - - +
392F GLN* 3.2 22.1 + - + +
393F THR* 5.2 1.3 + - - +
1200F LEU* 3.5 17.2 - - - +
1227F LEU* 2.5 33.4 + - - +
1228F LEU* 3.8 5.6 - - - -
1230F TYR* 1.3 72.7 - - - +
1232F ASP* 1.3 66.4 + - - +
1234F ASN* 3.2 3.0 + - - +
1235F ASN* 2.9 32.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP1232 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
253F LEU* 4.0 17.4 + - + +
257F MET 4.9 4.3 - - - +
258F ARG* 4.7 13.5 + - - +
259F ALA* 3.7 28.6 + - - +
1228F LEU* 2.9 24.9 + - - +
1229F GLU* 3.7 5.6 - - - +
1231F THR* 1.3 75.1 - - - +
1233F SER* 1.3 60.1 + - - +
1235F ASN* 2.8 11.9 + - - +
1236F ILE* 2.8 30.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER1233 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247F LEU* 5.0 16.8 - - - +
1196F THR* 3.5 16.3 - - - +
1229F GLU* 2.7 23.7 + - - +
1230F TYR* 3.4 10.8 - - - -
1232F ASP* 1.3 77.0 - - - +
1234F ASN* 1.3 57.2 + - - +
1236F ILE* 3.2 12.9 - - - +
1237F ALA* 2.9 31.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN1234 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388F ARG* 2.8 35.5 + - - +
392F GLN* 5.1 3.2 - - - +
1193F ASP* 3.7 6.0 - - - +
1196F THR* 3.5 13.4 - - + +
1197F GLN* 3.5 33.0 + - - +
1200F LEU* 4.6 14.1 - - + +
1230F TYR 2.9 13.0 + - - +
1231F THR* 3.6 10.8 - - + +
1233F SER* 1.3 75.6 - - - +
1235F ASN* 1.3 57.7 + - - +
1237F ALA* 3.7 1.9 - - - +
1238F SER* 2.9 31.0 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ASN1235 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
253F LEU* 3.3 21.6 - - + +
257F MET 6.0 0.4 - - - -
258F ARG 5.6 0.2 - - - -
259F ALA 5.2 6.1 - - - +
262F ASN* 5.5 1.0 - - - +
385F ILE* 3.4 32.9 + - + +
386F ASN* 5.0 5.3 + - - +
388F ARG* 2.6 36.7 + - - +
389F GLY* 4.4 12.6 + - - -
1231F THR* 2.9 21.4 + - - +
1232F ASP* 2.8 14.3 + - - +
1234F ASN* 1.3 72.9 - - - +
1236F ILE* 1.3 55.8 + - - +
1237F ALA 3.0 1.1 - - - -
1238F SER* 2.9 3.6 + - - -
1239F LEU* 2.6 38.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1236 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217F PHE* 3.5 22.2 - - + -
250F ILE* 3.8 9.2 - - + -
251F ALA* 3.7 30.1 - - + +
252F LYS* 5.4 0.9 - - - -
253F LEU* 3.4 33.9 - - + +
1232F ASP 2.8 16.4 + - - +
1233F SER* 3.2 17.7 - - - +
1235F ASN* 1.3 72.8 - - - +
1237F ALA* 1.3 65.5 + - - +
1239F LEU* 4.1 1.1 - - - -
1240F PHE* 3.1 52.7 + - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1237 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
250F ILE* 5.4 3.4 - - - -
1189F LEU* 5.0 6.9 - - - +
1192F LEU* 4.8 7.0 - - + -
1193F ASP* 3.7 30.9 - - + +
1196F THR* 4.1 12.6 - - - +
1233F SER 2.9 20.3 + - - +
1234F ASN 3.7 4.5 - - - +
1236F ILE* 1.3 81.7 - - + +
1238F SER* 1.3 62.8 + - - +
1240F PHE* 3.9 4.0 - - - +
1241F LEU* 3.1 21.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER1238 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
385F ILE* 4.1 12.8 - - - -
388F ARG* 3.9 8.8 + - - -
429F MET* 4.7 0.7 - - - -
1193F ASP* 2.8 20.8 + - - -
1234F ASN* 2.9 24.0 + - - -
1235F ASN 2.9 4.1 + - - -
1237F ALA* 1.3 74.7 - - - +
1239F LEU* 1.3 60.1 + - - +
1241F LEU* 3.1 4.6 + - - +
1242F THR* 2.8 32.1 + - - -
2001F GBM 3.2 31.6 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1239 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217F PHE* 3.4 46.1 - - + -
253F LEU* 3.2 29.8 - - + -
257F MET* 3.8 17.7 - - + -
378F TYR* 4.7 4.3 - - + -
381F ILE* 5.0 5.8 - - + -
382F GLU* 4.4 19.3 - - + -
385F ILE* 3.4 25.7 - - + +
1235F ASN 2.6 17.0 + - - +
1236F ILE* 3.9 4.7 - - - +
1238F SER* 1.3 73.0 - - - +
1240F PHE* 1.3 52.4 + - - +
1242F THR* 3.2 4.3 + - + +
1243F ALA* 2.7 36.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1240 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
215F VAL* 6.1 0.9 - - + -
216F ARG 3.5 18.6 - - - -
217F PHE* 3.9 15.5 - + + -
232F TRP* 3.9 29.6 - + - -
233F MET* 4.7 6.4 - - + +
236F PHE* 4.5 24.9 - + - -
250F ILE* 3.4 36.1 - - + -
251F ALA* 3.8 11.4 - - + -
1189F LEU* 3.5 23.4 - - + +
1236F ILE* 3.1 36.7 + - + +
1237F ALA* 3.9 1.8 - - - +
1239F LEU* 1.3 78.2 - - - +
1241F LEU* 1.3 54.1 + - - +
1243F ALA* 3.6 2.0 - - - +
1244F ALA* 2.7 37.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1241 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1186F SER* 4.3 7.6 - - - +
1189F LEU* 3.4 19.9 - - + +
1190F GLN* 3.2 57.7 - - + +
1193F ASP* 5.0 11.0 - - + +
1237F ALA 3.1 13.8 + - - +
1238F SER* 3.5 8.7 - - - +
1240F PHE* 1.3 77.3 - - - +
1242F THR* 1.3 61.7 + - - +
1244F ALA* 3.2 0.8 + - + +
1245F ASN* 3.0 42.5 + - - +
2001F GBM 4.1 26.9 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with THR1242 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378F TYR* 4.5 12.1 - - + -
381F ILE* 3.1 48.6 - - + +
1238F SER 2.8 13.6 + - - -
1239F LEU* 3.6 6.1 - - + +
1241F LEU* 1.3 76.2 - - - +
1243F ALA* 1.3 66.1 + - - +
1245F ASN 3.3 0.7 + - - -
1246F ARG* 2.9 36.2 + - + +
2001F GBM 3.0 35.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1243 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217F PHE* 3.9 19.5 - - + -
219F GLN* 5.3 2.0 - - - +
230F TYR* 4.7 8.0 - - + -
232F TRP* 4.1 7.6 - - + -
233F MET* 3.4 23.0 - - + +
378F TYR* 5.7 3.1 - - + -
1239F LEU 2.7 21.8 + - - +
1240F PHE* 3.6 3.6 - - - +
1242F THR* 1.3 77.4 - - + +
1244F ALA* 1.3 57.1 + - - +
1246F ARG* 3.2 7.3 + - - +
1247F TRP* 2.9 29.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1244 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233F MET* 3.8 15.9 - - + +
237F ILE* 6.0 1.6 - - + -
1182F PHE* 4.0 11.3 - - + -
1185F ALA* 5.4 8.1 - - + +
1186F SER* 5.7 3.1 - - - -
1189F LEU* 3.7 19.3 - - + -
1240F PHE 2.7 19.9 + - - +
1241F LEU* 3.6 4.0 - - + +
1243F ALA* 1.3 72.9 - - - +
1245F ASN* 1.3 66.3 + - - +
1247F TRP* 3.1 9.7 + - + +
1248F LEU* 3.0 24.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN1245 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1182F PHE* 3.8 26.2 - - - -
1186F SER* 4.7 5.1 + - - -
1241F LEU* 3.0 28.7 + - - +
1242F THR 3.6 0.7 - - - +
1244F ALA* 1.3 76.7 - - - +
1246F ARG* 1.3 88.5 + - - +
1248F LEU* 3.4 4.0 + - - +
1249F GLU* 2.9 24.3 + - - +
1300F ARG* 5.5 8.0 - - + +
2001F GBM 2.8 34.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1246 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
230F TYR* 3.3 36.1 - - + +
374F GLN* 3.4 25.2 + - - -
377F TYR* 3.9 20.6 - - - +
378F TYR* 4.5 6.7 - - + +
381F ILE* 5.3 0.2 - - - +
1242F THR* 2.9 33.2 + - + +
1243F ALA* 3.6 4.3 - - - +
1245F ASN* 1.3 102.3 + - - +
1247F TRP* 1.3 51.9 + - - +
1249F GLU* 3.2 15.5 + - - +
1250F VAL* 2.6 39.7 + - + +
1300F ARG* 5.7 1.8 - - - +
2001F GBM 2.8 52.6 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with TRP1247 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229F THR 3.8 18.4 - - - -
230F TYR* 3.6 21.5 - - + -
233F MET* 3.8 26.5 - - + -
234F ASN* 2.6 29.4 + - - -
237F ILE* 4.0 37.2 - - + -
1178F ILE* 4.8 21.8 - - + -
1181F TYR* 4.7 10.1 - + + -
1182F PHE* 4.6 24.5 - + + -
1243F ALA 2.9 14.6 + - - +
1244F ALA* 3.1 11.6 + - + +
1246F ARG* 1.3 77.0 - - - +
1248F LEU* 1.3 76.5 + - + +
1250F VAL* 3.3 1.1 + - - +
1251F CYS* 3.1 41.8 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1248 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1178F ILE* 3.7 26.7 - - + -
1182F PHE* 3.4 47.6 - - + -
1244F ALA 3.0 8.2 + - - +
1245F ASN* 3.8 2.9 - - - +
1247F TRP* 1.3 87.2 - - + +
1249F GLU* 1.3 69.4 + - + +
1251F CYS* 3.3 3.4 + - - +
1252F MET* 3.0 28.2 + - + +
1296F ASN* 4.9 4.5 - - - +
1299F VAL* 3.4 43.5 - - + -
1300F ARG* 4.8 7.6 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU1249 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373F LEU* 5.8 0.2 - - - +
374F GLN* 3.0 37.1 + - - +
377F TYR* 4.5 7.4 - - - -
1245F ASN 2.9 18.3 + - - +
1246F ARG* 3.5 19.2 + - - +
1248F LEU* 1.3 79.5 - - + +
1250F VAL* 1.3 61.0 + - - +
1252F MET 3.4 1.0 + - - -
1253F GLU* 3.0 34.6 + - - +
1296F ASN* 3.2 41.7 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1250 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228F GLY 3.7 6.3 - - - +
229F THR* 4.1 22.7 - - - +
230F TYR* 3.5 21.3 - - + -
370F ARG* 5.7 1.3 - - - +
371F THR* 5.5 3.4 - - - +
374F GLN* 3.4 28.5 - - + -
1246F ARG 2.6 24.4 + - - +
1247F TRP* 3.8 4.3 - - - +
1249F GLU* 1.3 75.8 - - - +
1251F CYS* 1.3 65.8 + - - +
1253F GLU* 3.2 13.2 + - - +
1254F TYR* 3.2 37.9 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with CYS1251 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229F THR* 5.1 2.0 - - - -
234F ASN* 5.0 0.7 - - - -
1178F ILE* 3.6 25.6 - - + -
1247F TRP* 3.1 45.7 + - - +
1248F LEU* 3.9 4.0 - - - +
1250F VAL* 1.3 83.8 - - - +
1252F MET* 1.3 64.1 + - - +
1253F GLU 3.1 0.9 + - - -
1254F TYR* 3.2 20.8 + - - +
1255F ILE* 3.2 20.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with MET1252 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1175F CYS* 6.1 1.1 - - - -
1178F ILE* 5.2 2.2 - - + +
1248F LEU* 3.0 21.4 + - + +
1250F VAL 3.3 0.2 - - - -
1251F CYS* 1.3 78.7 - - - +
1253F GLU* 1.3 60.0 + - - +
1255F ILE* 3.8 6.6 + - - +
1256F GLY* 3.3 14.4 + - - -
1292F SER 4.6 3.7 - - - +
1295F LEU* 3.8 33.0 - - + +
1296F ASN* 3.2 29.8 - - - +
1299F VAL* 5.9 1.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU1253 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370F ARG* 3.2 60.4 + - + +
373F LEU* 5.9 1.6 - - - +
374F GLN* 3.7 6.3 + - - +
1249F GLU* 3.0 31.6 + - - +
1250F VAL* 3.2 7.8 + - - +
1251F CYS 3.1 1.0 - - - -
1252F MET* 1.3 75.2 - - - +
1254F TYR* 1.3 60.6 + - - +
1255F ILE 3.1 1.8 - - - -
1256F GLY* 3.0 2.5 + - - +
1257F ALA* 2.8 29.5 + - - +
1292F SER* 3.7 19.0 + - - +
1293F ASN* 3.9 12.3 - - - +
1296F ASN* 3.2 20.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR1254 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228F GLY 5.0 0.2 - - - -
229F THR* 3.2 35.1 + - + +
363F PHE* 5.1 0.9 - - - -
367F LEU* 3.5 35.8 - - + +
370F ARG* 5.5 4.3 - - + -
371F THR* 3.4 25.3 + - - +
1250F VAL* 3.2 27.8 + - + +
1251F CYS* 3.2 15.3 + - - +
1253F GLU* 1.3 75.9 - - + +
1255F ILE* 1.3 61.0 + - + +
1257F ALA* 3.2 3.3 + - - +
1258F CYS* 2.9 26.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1255 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1171F LEU* 4.1 31.9 - - + -
1174F VAL* 4.0 26.0 - - + -
1175F CYS* 3.7 34.1 - - - -
1178F ILE* 4.5 12.3 - - + -
1251F CYS* 3.2 16.0 + - + +
1252F MET* 4.1 6.1 - - - +
1253F GLU 3.1 0.4 - - - -
1254F TYR* 1.3 77.9 - - + +
1256F GLY* 1.3 58.0 + - - +
1258F CYS* 3.2 6.6 + - - +
1259F VAL* 3.0 32.7 + - + +
1295F LEU* 5.0 4.7 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1256 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1252F MET 3.3 8.6 + - - -
1253F GLU 3.0 4.4 + - - -
1255F ILE* 1.3 79.4 - - - +
1257F ALA* 1.3 56.5 + - - +
1259F VAL* 3.2 12.8 - - - +
1260F VAL* 2.9 31.4 + - - +
1288F ALA 4.2 0.3 - - - +
1291F VAL* 4.3 7.6 - - - -
1292F SER* 3.3 24.6 + - - -
1295F LEU* 4.9 4.0 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1257 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363F PHE* 3.1 22.2 - - + -
366F LEU* 4.2 20.6 - - + -
367F LEU* 3.7 28.5 - - + +
370F ARG* 6.1 1.1 - - + -
1253F GLU 2.8 13.8 + - - +
1254F TYR 3.2 8.0 + - - +
1256F GLY* 1.3 71.9 - - - +
1258F CYS* 1.3 63.0 + - - +
1260F VAL* 3.3 10.7 + - - +
1261F LEU 3.0 18.2 + - - -
1292F SER* 4.1 1.6 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with CYS1258 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363F PHE* 3.7 14.3 - - + -
1171F LEU* 4.3 19.3 - - + -
1254F TYR 2.9 14.1 + - - +
1255F ILE* 3.2 11.9 + - - +
1257F ALA* 1.3 77.2 - - - +
1259F VAL* 1.3 58.8 + - - +
1261F LEU* 3.2 6.3 + - - +
1262F ILE* 3.0 52.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1259 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1154F LEU* 6.3 2.7 - - + -
1157F ILE* 5.8 3.1 - - + +
1164F PHE* 3.8 26.6 - - + -
1168F LEU* 5.2 6.1 - - + -
1171F LEU* 3.7 27.1 - - + -
1255F ILE* 3.0 20.1 + - + +
1256F GLY* 3.2 15.0 - - - +
1258F CYS* 1.3 73.0 - - - +
1260F VAL* 1.3 58.9 + - - +
1262F ILE* 4.4 1.8 - - - +
1263F ALA* 2.9 33.6 + - - +
1288F ALA* 4.6 5.5 - - + +
1291F VAL* 3.8 26.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1260 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359F ALA* 5.5 1.1 - - - +
362F LEU* 3.9 24.5 - - + -
363F PHE* 5.3 4.3 - - - +
366F LEU* 3.6 32.8 - - + -
1256F GLY 2.9 19.4 + - - +
1257F ALA 3.3 9.4 - - - +
1258F CYS 3.2 0.2 - - - -
1259F VAL* 1.3 76.3 - - - +
1261F LEU* 1.3 64.7 + - - +
1263F ALA* 3.9 0.9 - - - +
1264F ALA* 3.0 25.3 + - + +
1285F LEU* 4.3 5.1 - - + +
1288F ALA* 3.3 39.3 - - + +
1289F LEU* 4.2 4.3 - - + +
1292F SER* 5.4 0.7 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1261 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359F ALA* 4.1 29.8 - - + +
360F VAL* 4.3 14.8 - - + -
363F PHE* 3.6 44.0 - - + -
1257F ALA 3.0 5.7 + - - -
1258F CYS* 3.2 11.0 + - - +
1260F VAL* 1.3 78.3 - - - +
1262F ILE* 1.3 63.8 + - + +
1264F ALA* 3.3 4.1 + - - +
1265F ALA* 3.0 32.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1262 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1164F PHE* 3.6 27.6 - - + -
1167F ALA* 3.8 27.8 - - + -
1171F LEU* 4.6 7.6 - - + -
1258F CYS* 3.0 37.0 + - - +
1259F VAL* 5.0 0.7 - - - -
1261F LEU* 1.3 82.2 - - + +
1263F ALA* 1.3 58.7 + - - +
1265F ALA* 3.4 4.9 + - - +
1266F THR* 2.9 42.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1263 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157F ILE* 4.4 24.9 - - + -
1161F THR* 5.1 3.4 - - + +
1164F PHE* 4.1 8.4 - - + -
1259F VAL 2.9 19.6 + - - +
1260F VAL 3.9 2.7 - - - +
1262F ILE* 1.3 77.8 - - - +
1264F ALA* 1.3 56.9 + - - +
1266F THR* 4.1 2.6 - - - -
1267F SER* 2.8 38.3 + - - +
1284F GLY* 5.0 3.6 - - - +
1285F LEU* 4.5 6.3 - - + -
1288F ALA* 4.6 13.0 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1264 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323F ILE* 5.0 2.0 - - + -
359F ALA* 3.6 28.3 - - + -
362F LEU* 5.9 1.6 - - + -
1260F VAL* 3.0 21.0 + - + +
1261F LEU 3.7 2.0 - - - +
1263F ALA* 1.3 76.7 - - - +
1265F ALA* 1.3 62.6 + - - +
1267F SER* 3.9 2.1 - - - -
1268F ILE* 3.0 37.9 + - + +
1285F LEU* 3.8 23.5 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1265 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356F TYR* 3.5 25.7 + - + -
359F ALA* 5.1 2.4 - - + +
1261F LEU* 3.0 22.1 + - + +
1262F ILE* 3.8 5.8 - - - +
1264F ALA* 1.3 76.4 - - - +
1266F THR* 1.3 58.5 + - - +
1269F SER* 2.9 32.8 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with THR1266 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1161F THR* 3.8 23.6 - - - -
1163F VAL* 3.8 22.8 - - + +
1164F PHE* 5.0 6.0 - - - +
1262F ILE* 2.9 27.7 + - - +
1263F ALA* 4.8 0.4 - - - -
1265F ALA* 1.3 77.3 - - - +
1267F SER* 1.3 57.9 + - - +
1269F SER* 3.4 6.0 + - - -
1270F ASN* 2.9 51.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER1267 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160F VAL* 4.0 8.7 - - - +
1161F THR* 3.0 22.0 - - - +
1263F ALA* 2.8 24.6 + - - +
1264F ALA* 3.9 2.7 - - - -
1266F THR* 1.3 77.9 - - - +
1268F ILE* 1.3 54.5 + - - +
1270F ASN* 3.3 4.0 + - - +
1271F SER* 2.7 37.9 + - - -
1281F VAL* 3.7 32.0 + - - +
1284F GLY* 5.7 2.9 - - - -
1285F LEU* 5.7 1.2 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1268 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323F ILE* 3.9 27.4 - - + -
327F LEU* 3.7 26.7 - - + -
355F ALA* 3.5 48.2 - - + +
356F TYR* 3.6 18.2 - - + -
359F ALA* 5.1 0.7 - - + -
1264F ALA* 3.0 22.8 + - + +
1267F SER* 1.3 73.7 - - - +
1269F SER* 1.3 60.5 + - - +
1271F SER* 3.7 5.3 - - - -
1272F LEU* 2.9 46.1 + - + +
1281F VAL* 4.6 3.8 - - + -
1285F LEU* 5.8 0.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with SER1269 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356F TYR* 3.0 22.8 + - - -
1265F ALA 2.9 16.7 + - - -
1266F THR* 3.6 7.0 - - - -
1268F ILE* 1.3 78.5 - - - +
1270F ASN* 1.3 63.5 + - - +
1272F LEU* 3.7 18.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN1270 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160F VAL 5.3 1.8 + - - +
1161F THR* 4.6 9.7 - - - +
1162F PRO* 5.0 5.7 - - - +
1163F VAL* 5.0 5.7 - - - +
1266F THR* 2.9 43.3 + - - +
1267F SER* 3.9 3.6 - - - +
1269F SER* 1.3 80.3 + - - +
1271F SER* 1.3 67.2 + - - +
1272F LEU 3.2 4.6 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with SER1271 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327F LEU* 4.0 24.0 - - - -
1267F SER 2.7 23.0 + - - -
1268F ILE 3.7 3.6 - - - -
1270F ASN* 1.3 77.1 - - - +
1272F LEU* 1.3 64.4 + - - +
1277F SER* 3.9 19.6 + - - +
1281F VAL* 3.0 23.4 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1272 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326F HIS 5.8 1.1 - - - +
327F LEU* 4.1 18.8 - - + -
355F ALA* 5.5 4.3 - - + -
356F TYR* 4.7 8.7 - - + +
1268F ILE* 2.9 42.1 + - + +
1269F SER* 3.8 13.7 - - - +
1270F ASN 3.2 6.5 - - - -
1271F SER* 1.3 82.9 - - - +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il