Contacts of the helix formed by residues 1219 - 1272 (chain G) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TYR1219 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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770G VAL 5.3 3.1 + - - -
790G PHE* 4.3 20.4 - - + -
791G GLU* 5.3 5.8 - - + -
846G GLN* 4.5 18.7 + - + +
1214G ILE* 3.1 18.8 + - + +
1217G PHE* 3.3 50.5 - + + -
1218G ARG* 1.3 80.3 - - - +
1220G GLU* 1.3 63.8 + - - +
1221G ALA* 3.2 3.6 - - - -
1222G ARG* 3.1 52.1 + - - +
1223G PHE* 3.5 15.0 + + + -
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Residues in contact with GLU1220 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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396G TYR* 3.7 2.1 + - - -
400G MET* 3.4 34.5 - - + +
1214G ILE* 3.8 18.0 - - + +
1215G ARG* 4.5 9.1 - - + +
1218G ARG* 3.3 36.1 - - - +
1219G TYR* 1.3 70.7 - - - +
1221G ALA* 1.3 64.2 + - + +
1223G PHE* 3.3 3.3 + - - +
1224G GLN* 2.8 38.8 + - - +
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Residues in contact with ALA1221 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1219G TYR 3.2 0.8 - - - -
1220G GLU* 1.3 81.9 - - + +
1222G ARG* 1.3 60.5 + - + +
1224G GLN* 3.4 19.3 - - - +
1225G GLN* 3.0 27.9 + - - +
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Residues in contact with ARG1222 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
791G GLU* 3.7 40.1 + - + +
1219G TYR* 3.1 43.4 + - - +
1221G ALA* 1.3 80.2 - - + +
1223G PHE* 1.3 67.3 + - + +
1225G GLN* 3.2 9.1 + - - +
1226G LYS* 2.9 33.2 + - - +
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Residues in contact with PHE1223 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396G TYR* 2.9 20.7 + - - +
790G PHE 6.3 0.7 - - - -
791G GLU* 5.0 9.9 - - + -
1203G HIS* 3.4 25.0 + + + -
1207G THR* 4.8 2.2 - - + -
1214G ILE* 3.6 52.3 - - + -
1219G TYR* 3.5 12.9 + + + -
1220G GLU* 3.3 5.1 + - - +
1221G ALA 3.2 0.2 - - - -
1222G ARG* 1.3 82.1 - - + +
1224G GLN* 1.3 60.7 + - - +
1226G LYS* 3.3 42.0 - - + +
1227G LEU* 2.9 25.5 + - - +
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Residues in contact with GLN1224 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396G TYR* 3.0 28.3 + - + -
397G ASN* 3.2 21.0 + - - +
400G MET* 4.6 9.2 - - + +
1220G GLU* 2.8 24.8 + - - +
1221G ALA* 3.4 20.2 - - - +
1223G PHE* 1.3 76.2 - - - +
1225G GLN* 1.3 56.5 + - - +
1227G LEU* 3.3 2.6 + - - +
1228G LEU* 2.9 38.8 + - + +
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Residues in contact with GLN1225 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1221G ALA 3.0 15.4 + - - +
1222G ARG* 3.2 13.0 + - - +
1224G GLN* 1.3 75.7 - - - +
1226G LYS* 1.3 58.8 + - + +
1228G LEU* 3.2 23.7 + - - +
1229G GLU* 2.9 52.6 + - - +
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Residues in contact with LYS1226 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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791G GLU* 4.5 16.1 - - - +
1203G HIS* 4.2 11.9 - - + +
1222G ARG* 2.9 20.2 + - - +
1223G PHE* 3.3 40.4 - - + +
1224G GLN 3.3 0.2 - - - -
1225G GLN* 1.3 76.2 - - + +
1227G LEU* 1.3 59.6 + - - +
1229G GLU* 3.2 18.2 + - - +
1230G TYR* 2.9 49.2 + - + +
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Residues in contact with LEU1227 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392G GLN* 4.2 14.6 - - + +
393G THR* 5.0 3.4 - - - +
396G TYR* 3.4 42.6 - - + -
1200G LEU* 4.0 31.2 - - + +
1203G HIS* 3.8 23.9 + - + +
1204G PHE* 5.1 11.0 - - + -
1223G PHE 2.9 17.7 + - - +
1224G GLN* 3.8 4.7 - - - +
1226G LYS* 1.3 73.3 - - - +
1228G LEU* 1.3 57.6 + - - +
1230G TYR* 3.3 3.3 + - + -
1231G THR* 2.5 45.5 + - - +
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Residues in contact with LEU1228 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259G ALA* 3.4 30.7 - - + -
260G LEU* 3.9 34.3 - - + +
393G THR* 4.3 14.6 - - + +
1224G GLN* 2.9 24.9 + - + +
1225G GLN* 3.4 31.0 - - - +
1227G LEU* 1.3 75.9 - - - +
1229G GLU* 1.3 56.3 + - - +
1231G THR* 4.4 2.5 - - - -
1232G ASP* 2.9 40.2 + - - +
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Residues in contact with GLU1229 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1225G GLN* 2.9 38.6 + - - +
1226G LYS* 3.2 21.1 + - - +
1228G LEU* 1.3 76.3 - - - +
1230G TYR* 1.3 62.9 + - + +
1232G ASP* 3.4 4.9 + - - +
1233G SER* 2.7 39.1 + - - +
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Residues in contact with TYR1230 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1196G THR* 4.8 5.4 - - - +
1199G PRO* 3.8 31.1 - - + +
1200G LEU* 3.8 26.7 - - + +
1203G HIS* 3.5 37.2 - + + -
1226G LYS* 2.9 33.6 + - + +
1227G LEU* 3.8 4.5 - - + +
1229G GLU* 1.3 84.0 - - + +
1231G THR* 1.3 57.5 + - - +
1233G SER* 3.3 8.4 + - - -
1234G ASN* 2.9 28.4 + - - +
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Residues in contact with THR1231 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259G ALA* 4.2 12.3 - - + -
388G ARG* 5.7 0.7 - - - +
389G GLY* 3.6 28.0 - - - +
392G GLN* 3.2 22.8 + - + +
393G THR* 5.2 1.4 + - - +
1200G LEU* 3.5 16.8 - - - +
1227G LEU* 2.5 32.1 + - - +
1228G LEU* 3.8 5.8 - - - -
1230G TYR* 1.3 73.5 - - - +
1232G ASP* 1.3 67.3 + - - +
1234G ASN* 3.2 3.7 + - + +
1235G ASN* 2.9 33.1 + - - +
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Residues in contact with ASP1232 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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253G LEU* 4.0 18.5 + - + +
257G MET 4.9 5.1 - - - +
258G ARG* 4.7 13.2 + - - +
259G ALA* 3.7 27.6 + - - +
1228G LEU* 2.9 26.6 + - - +
1229G GLU* 3.7 5.8 - - - +
1231G THR* 1.3 75.9 - - - +
1233G SER* 1.3 58.6 + - - +
1235G ASN* 2.8 11.5 + - - +
1236G ILE* 2.8 30.5 + - - +
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Residues in contact with SER1233 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247G LEU* 5.0 16.9 - - - +
1196G THR* 3.5 17.1 - - - +
1229G GLU* 2.7 23.9 + - - +
1230G TYR* 3.4 9.7 - - - -
1231G THR 3.2 0.2 - - - -
1232G ASP* 1.3 77.0 - - - +
1234G ASN* 1.3 56.8 + - - +
1236G ILE* 3.2 12.6 - - - +
1237G ALA* 2.9 30.8 + - - +
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Residues in contact with ASN1234 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388G ARG* 2.8 35.8 + - - +
392G GLN* 5.1 2.8 - - - +
1193G ASP* 3.7 6.0 - - - +
1196G THR* 3.5 12.5 - - + +
1197G GLN* 3.5 33.0 + - - +
1200G LEU* 4.6 14.1 - - + +
1230G TYR 2.9 13.4 + - - +
1231G THR* 3.2 11.0 + - + +
1233G SER* 1.3 75.4 - - - +
1235G ASN* 1.3 57.9 + - - +
1237G ALA* 3.7 1.8 - - - +
1238G SER* 2.9 30.8 + - - -
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Residues in contact with ASN1235 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
253G LEU* 3.3 21.2 - - + +
257G MET 6.0 0.2 - - - -
258G ARG 5.6 0.6 - - - -
259G ALA 5.2 6.1 - - - +
262G ASN* 5.5 1.8 - - - +
385G ILE* 3.4 33.0 + - + +
386G ASN* 5.0 5.5 + - - +
388G ARG* 2.6 36.4 + - - +
389G GLY* 4.4 11.8 + - - -
1231G THR* 2.9 20.5 + - - +
1232G ASP* 2.8 12.9 + - - +
1234G ASN* 1.3 72.7 - - - +
1236G ILE* 1.3 56.1 + - - +
1237G ALA 3.0 0.9 - - - -
1238G SER* 2.9 3.7 + - - -
1239G LEU* 2.6 39.0 + - - +
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Residues in contact with ILE1236 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217G PHE* 3.5 21.8 - - + -
250G ILE* 3.8 7.9 - - + -
251G ALA* 3.7 30.3 - - + +
252G LYS* 5.4 0.7 - - - -
253G LEU* 3.4 35.5 - - + +
1232G ASP 2.8 17.4 + - - +
1233G SER* 3.2 17.7 - - - +
1235G ASN* 1.3 71.5 - - - +
1237G ALA* 1.3 65.9 + - + +
1239G LEU* 3.8 1.6 - - - -
1240G PHE* 3.1 53.4 + - + -
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Residues in contact with ALA1237 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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250G ILE* 5.4 3.6 - - + -
1189G LEU* 5.0 7.3 - - - +
1192G LEU* 4.8 7.2 - - + -
1193G ASP* 3.7 30.9 - - + +
1196G THR* 4.1 11.9 - - - +
1233G SER 2.9 19.2 + - - +
1234G ASN 3.7 4.5 - - - +
1236G ILE* 1.3 81.6 - - + +
1238G SER* 1.3 62.3 + - - +
1240G PHE* 3.4 4.4 + - - +
1241G LEU* 3.1 22.2 + - - +
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Residues in contact with SER1238 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
385G ILE* 4.1 12.3 - - - -
388G ARG* 3.9 9.7 + - - -
429G MET* 4.7 0.7 - - - -
1193G ASP* 2.8 20.3 + - - -
1234G ASN* 2.9 23.1 + - - -
1235G ASN 2.9 3.5 + - - -
1237G ALA* 1.3 74.3 - - - +
1239G LEU* 1.3 59.4 + - - +
1241G LEU* 3.1 4.8 + - - +
1242G THR* 2.8 31.7 + - - -
2001G GBM 3.2 31.5 - - - +
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Residues in contact with LEU1239 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217G PHE* 3.4 47.1 - - + -
253G LEU* 3.2 30.3 - - + -
257G MET* 3.8 18.4 - - + -
378G TYR* 4.7 4.3 - - + -
381G ILE* 5.0 6.1 - - + -
382G GLU* 4.4 18.8 - - + -
385G ILE* 3.4 27.3 - - + +
1235G ASN 2.6 17.1 + - - +
1236G ILE* 3.9 4.5 - - - +
1238G SER* 1.3 72.7 - - - +
1240G PHE* 1.3 52.9 + - - +
1242G THR* 3.2 4.6 + - + +
1243G ALA* 2.7 36.4 + - - +
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Residues in contact with PHE1240 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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215G VAL* 6.1 0.7 - - + -
216G ARG 3.5 20.2 - - - -
217G PHE* 3.9 15.0 - + + -
232G TRP* 3.9 29.4 - + - -
233G MET* 4.7 6.0 - - + +
236G PHE* 4.5 24.9 - + - -
250G ILE* 3.4 36.1 - - + -
251G ALA* 3.8 11.4 - - + -
1189G LEU* 3.5 23.1 - - + +
1236G ILE* 3.1 37.5 + - + +
1237G ALA* 3.9 1.6 - - - +
1238G SER 3.2 0.2 - - - -
1239G LEU* 1.3 79.0 - - - +
1241G LEU* 1.3 53.8 + - - +
1243G ALA* 3.6 2.0 - - - +
1244G ALA* 2.7 37.8 + - - +
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Residues in contact with LEU1241 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1186G SER* 4.3 7.0 - - - +
1189G LEU* 3.4 20.8 - - + +
1190G GLN* 3.2 57.2 - - + +
1193G ASP* 5.0 10.5 - - + +
1237G ALA 3.1 12.8 + - - +
1238G SER* 3.1 9.2 + - - +
1240G PHE* 1.3 77.3 - - - +
1242G THR* 1.3 63.0 + - - +
1244G ALA* 3.6 1.0 - - + +
1245G ASN* 3.0 41.8 + - - +
2001G GBM 4.1 26.9 - - + +
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Residues in contact with THR1242 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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378G TYR* 4.5 12.1 - - + -
381G ILE* 3.1 48.0 - - + +
1238G SER 2.8 14.4 + - - -
1239G LEU* 3.6 5.8 - - + +
1241G LEU* 1.3 75.4 - - - +
1243G ALA* 1.3 66.8 + - - +
1245G ASN 3.3 0.7 + - - -
1246G ARG* 2.9 37.6 + - + +
2001G GBM 3.0 35.6 + - - +
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Residues in contact with ALA1243 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217G PHE* 3.9 19.3 - - + -
219G GLN* 5.3 2.0 - - - +
230G TYR* 4.7 7.4 - - + -
232G TRP* 4.1 7.6 - - + -
233G MET* 3.4 22.1 - - + +
378G TYR* 5.7 4.0 - - + -
1239G LEU 2.7 21.4 + - - +
1240G PHE* 3.6 3.6 - - - +
1242G THR* 1.3 76.9 - - - +
1244G ALA* 1.3 56.9 + - - +
1246G ARG* 3.2 7.9 + - - +
1247G TRP* 2.9 29.1 + - - +
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Residues in contact with ALA1244 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233G MET* 3.8 15.2 - - + +
237G ILE* 6.0 1.3 - - + -
1182G PHE* 4.0 11.6 - - + -
1185G ALA* 5.4 7.9 - - + +
1186G SER* 5.7 2.7 - - - -
1189G LEU* 3.7 19.3 - - + -
1240G PHE 2.7 21.4 + - - +
1241G LEU* 3.6 4.5 - - + +
1243G ALA* 1.3 73.8 - - - +
1245G ASN* 1.3 67.9 + - - +
1247G TRP* 3.1 9.6 + - + +
1248G LEU* 3.0 24.4 + - - +
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Residues in contact with ASN1245 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1182G PHE* 3.8 26.3 - - - -
1186G SER* 4.7 5.5 + - - +
1241G LEU* 3.0 29.4 + - - +
1242G THR 3.6 0.7 - - - +
1244G ALA* 1.3 76.6 - - - +
1246G ARG* 1.3 88.5 + - - +
1248G LEU* 3.4 4.3 + - - +
1249G GLU* 2.9 23.9 + - - +
1300G ARG* 5.5 7.8 - - + +
2001G GBM 2.8 34.2 + - - +
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Residues in contact with ARG1246 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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230G TYR* 3.3 35.2 - - + +
374G GLN* 3.4 24.6 + - - -
377G TYR* 3.9 21.3 - - - +
378G TYR* 4.5 7.0 - - + +
1242G THR* 2.9 32.8 + - + +
1243G ALA* 3.6 4.5 - - - +
1245G ASN* 1.3 102.9 + - - +
1247G TRP* 1.3 52.8 + - - +
1249G GLU* 3.2 15.7 + - - +
1250G VAL* 2.6 39.7 + - + +
1300G ARG* 5.7 2.0 - - - +
2001G GBM 2.8 52.2 + - - -
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Residues in contact with TRP1247 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229G THR 3.8 19.7 + - - -
230G TYR* 3.6 19.9 - - + -
233G MET* 3.8 25.1 - - + -
234G ASN* 2.6 30.5 + - + +
237G ILE* 4.0 35.9 - - + -
1178G ILE* 4.8 20.6 - - + -
1181G TYR* 4.7 10.8 - + + -
1182G PHE* 4.6 24.9 - + + -
1243G ALA 2.9 13.9 + - - +
1244G ALA* 3.1 12.1 + - + +
1246G ARG* 1.3 76.9 - - - +
1248G LEU* 1.3 75.3 + - + +
1250G VAL* 3.3 1.5 + - - +
1251G CYS* 3.1 41.3 + - - -
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Residues in contact with LEU1248 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1178G ILE* 3.7 26.5 - - + -
1182G PHE* 3.4 48.2 - - + -
1244G ALA 3.0 7.8 + - - +
1245G ASN* 3.8 3.4 - - - +
1247G TRP* 1.3 86.8 - - + +
1249G GLU* 1.3 66.9 + - - +
1251G CYS* 3.3 3.5 + - - +
1252G MET* 3.0 28.4 + - + +
1296G ASN* 4.9 5.4 - - - +
1299G VAL* 3.4 42.8 - - + -
1300G ARG* 4.8 7.2 - - + +
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Residues in contact with GLU1249 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
373G LEU* 5.8 0.5 - - - +
374G GLN* 3.0 35.9 + - - +
377G TYR* 4.5 7.3 - - - -
1245G ASN 2.9 18.2 + - - +
1246G ARG* 3.5 19.7 - - - +
1248G LEU* 1.3 81.0 - - + +
1250G VAL* 1.3 60.2 + - - +
1252G MET 3.4 0.7 + - - -
1253G GLU* 3.0 34.3 + - - +
1296G ASN* 3.2 41.0 + - + +
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Residues in contact with VAL1250 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228G GLY 3.7 6.3 - - - +
229G THR* 4.1 24.0 - - - +
230G TYR* 3.5 22.0 - - + -
370G ARG* 5.7 1.1 - - - +
371G THR* 5.5 3.4 - - - +
374G GLN* 3.4 29.6 - - + -
1246G ARG 2.6 24.4 + - - +
1247G TRP 3.8 4.3 - - - +
1249G GLU* 1.3 75.7 - - - +
1251G CYS* 1.3 65.8 + - - +
1253G GLU* 3.2 13.4 + - - +
1254G TYR* 3.2 37.1 + - + +
----------------------------------------------------------
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Residues in contact with CYS1251 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229G THR* 5.1 2.7 - - - -
234G ASN* 5.0 0.7 - - - -
1178G ILE* 3.6 26.0 - - + -
1247G TRP* 3.1 45.1 + - - +
1248G LEU* 3.9 4.0 - - - +
1249G GLU 3.3 0.2 - - - -
1250G VAL* 1.3 82.9 - - - +
1252G MET* 1.3 65.0 + - - +
1253G GLU 3.1 1.0 + - - -
1254G TYR* 3.2 20.4 + - - +
1255G ILE* 3.2 19.8 + - + +
----------------------------------------------------------
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Residues in contact with MET1252 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1175G CYS* 6.1 1.1 - - - -
1178G ILE* 5.2 1.7 - - - +
1248G LEU* 3.0 21.8 + - + +
1249G GLU 3.8 0.2 - - - +
1251G CYS* 1.3 76.6 - - - +
1253G GLU* 1.3 61.3 + - - +
1255G ILE* 3.8 7.1 + - - +
1256G GLY* 3.3 14.6 + - - -
1292G SER* 4.6 3.3 - - - +
1295G LEU* 3.8 33.4 - - + +
1296G ASN* 3.2 29.8 - - - +
1299G VAL* 5.9 1.6 - - + -
----------------------------------------------------------
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Residues in contact with GLU1253 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367G LEU* 5.5 0.2 - - - -
370G ARG* 3.2 58.6 + - + +
373G LEU* 5.9 1.9 - - - +
374G GLN* 3.7 6.6 + - - +
1249G GLU* 3.0 32.6 + - - +
1250G VAL* 3.2 8.4 + - - +
1251G CYS 3.1 0.6 - - - -
1252G MET* 1.3 75.6 - - - +
1254G TYR* 1.3 60.5 + - - +
1255G ILE 3.1 2.2 - - - -
1256G GLY* 3.0 2.5 + - - +
1257G ALA* 2.8 29.9 + - - +
1292G SER* 3.7 18.3 + - - +
1293G ASN* 3.9 11.6 - - - +
1296G ASN* 3.2 21.2 + - - +
----------------------------------------------------------
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Residues in contact with TYR1254 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228G GLY 5.0 0.5 - - - -
229G THR* 3.2 34.6 + - + +
363G PHE* 5.1 0.7 - - - -
367G LEU* 3.5 34.0 - - + +
370G ARG* 5.5 4.0 - - + -
371G THR* 3.4 25.4 + - - +
1250G VAL* 3.2 27.3 + - + +
1251G CYS* 3.2 16.0 + - - +
1253G GLU* 1.3 77.2 - - + +
1255G ILE* 1.3 60.2 + - + +
1257G ALA* 3.2 3.8 + - - +
1258G CYS* 2.9 26.9 + - - +
----------------------------------------------------------
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Residues in contact with ILE1255 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1171G LEU* 4.1 33.2 - - + -
1174G VAL* 4.0 25.8 - - + -
1175G CYS* 3.7 33.4 - - - -
1178G ILE* 4.5 13.0 - - + -
1251G CYS 3.2 16.0 + - - +
1252G MET* 4.1 7.2 - - - +
1253G GLU 3.1 0.6 - - - -
1254G TYR* 1.3 78.6 - - + +
1256G GLY* 1.3 58.2 + - - +
1258G CYS* 3.2 6.6 + - - +
1259G VAL* 3.0 31.7 + - + +
1295G LEU* 5.0 5.2 - - + -
----------------------------------------------------------
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Residues in contact with GLY1256 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1252G MET 3.3 9.7 + - - -
1253G GLU 3.0 4.3 + - - -
1255G ILE* 1.3 79.2 - - - +
1257G ALA* 1.3 55.7 + - - +
1259G VAL* 3.2 13.4 - - - +
1260G VAL* 2.9 31.6 + - - +
1288G ALA 4.2 0.5 - - - +
1291G VAL* 4.3 7.6 - - - -
1292G SER* 3.3 24.0 - - - -
1295G LEU* 4.9 3.7 - - - +
----------------------------------------------------------
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Residues in contact with ALA1257 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363G PHE* 3.1 21.4 - - + -
366G LEU* 4.2 20.6 - - + -
367G LEU* 3.7 28.3 - - + +
370G ARG* 6.1 1.1 - - + -
1253G GLU 2.8 14.0 + - - +
1254G TYR 3.2 7.8 + - - +
1256G GLY* 1.3 72.1 - - - +
1258G CYS* 1.3 63.2 + - - +
1260G VAL* 3.3 10.5 + - - +
1261G LEU 3.0 18.4 + - - -
1292G SER* 4.1 1.0 + - - -
----------------------------------------------------------
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Residues in contact with CYS1258 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363G PHE* 3.7 14.1 - - + -
1171G LEU* 4.3 18.8 - - + -
1254G TYR 2.9 13.0 + - - +
1255G ILE* 3.2 12.7 + - - +
1257G ALA* 1.3 78.3 - - - +
1259G VAL* 1.3 57.5 + - - +
1261G LEU* 3.2 5.9 + - - +
1262G ILE* 3.0 53.0 + - - +
----------------------------------------------------------
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Residues in contact with VAL1259 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1154G LEU* 6.3 2.7 - - + -
1157G ILE* 5.8 3.8 - - + +
1164G PHE* 3.8 28.0 - - + -
1168G LEU* 5.2 6.1 - - + -
1171G LEU* 3.7 26.0 - - + -
1255G ILE* 3.0 21.5 + - + +
1256G GLY* 3.2 15.3 - - - +
1258G CYS* 1.3 73.5 - - - +
1260G VAL* 1.3 60.2 + - - +
1262G ILE* 4.4 1.6 - - - +
1263G ALA* 2.9 32.7 + - - +
1288G ALA* 4.6 4.9 - - + +
1291G VAL* 3.8 26.0 - - + -
----------------------------------------------------------
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Residues in contact with VAL1260 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359G ALA 5.5 1.1 - - - +
362G LEU* 3.9 24.9 - - + -
363G PHE* 5.3 4.3 - - - +
366G LEU* 3.6 32.1 - - + -
1256G GLY 2.9 18.9 + - - +
1257G ALA 3.3 9.6 - - - +
1259G VAL* 1.3 76.2 - - - +
1261G LEU* 1.3 65.5 + - - +
1263G ALA* 3.9 1.0 - - - +
1264G ALA* 3.0 24.8 + - + +
1285G LEU* 4.3 5.8 - - + +
1288G ALA* 3.3 39.0 - - + +
1289G LEU* 4.2 4.7 - - + +
1292G SER* 5.4 0.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU1261 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359G ALA* 4.1 29.8 - - + +
360G VAL* 4.3 15.7 - - + -
363G PHE* 3.6 43.7 - - + -
1257G ALA 3.0 5.7 + - - -
1258G CYS* 3.2 11.0 + - - +
1260G VAL* 1.3 78.6 - - - +
1262G ILE* 1.3 62.7 + - + +
1264G ALA* 3.3 3.7 + - - +
1265G ALA* 3.0 32.2 + - + +
----------------------------------------------------------
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Residues in contact with ILE1262 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1164G PHE* 3.6 26.9 - - + -
1167G ALA* 3.8 28.3 - - + -
1171G LEU* 4.6 8.1 - - + -
1258G CYS* 3.0 37.2 + - - +
1259G VAL* 5.0 0.4 - - - -
1261G LEU* 1.3 81.7 - - + +
1263G ALA* 1.3 58.4 + - - +
1265G ALA* 3.4 4.8 + - - +
1266G THR* 2.9 42.2 + - - +
----------------------------------------------------------
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Residues in contact with ALA1263 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157G ILE* 4.4 25.4 - - + -
1161G THR* 5.1 3.1 - - - +
1164G PHE* 4.1 8.9 - - + -
1259G VAL 2.9 19.7 + - - +
1260G VAL 3.9 2.5 - - - +
1262G ILE* 1.3 76.9 - - - +
1264G ALA* 1.3 56.8 + - - +
1266G THR* 4.1 2.4 - - - -
1267G SER* 2.8 39.4 + - - +
1284G GLY* 5.0 3.8 - - - +
1285G LEU* 4.5 5.2 - - + -
1288G ALA* 4.6 13.0 - - + -
----------------------------------------------------------
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Residues in contact with ALA1264 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323G ILE* 5.0 2.5 - - + -
359G ALA* 3.6 27.6 - - + -
362G LEU* 5.9 1.8 - - + -
1260G VAL* 3.0 21.4 + - + +
1261G LEU 3.7 2.0 - - - +
1263G ALA* 1.3 76.9 - - - +
1265G ALA* 1.3 62.1 + - - +
1267G SER* 3.9 1.7 - - - -
1268G ILE* 3.0 37.8 + - + +
1285G LEU* 3.8 24.3 - - + +
----------------------------------------------------------
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Residues in contact with ALA1265 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356G TYR* 3.5 26.3 + - + -
359G ALA* 5.1 2.4 - - + +
1261G LEU* 3.0 22.1 + - + +
1262G ILE* 3.8 6.1 - - - +
1264G ALA* 1.3 76.9 - - - +
1266G THR* 1.3 59.2 + - - +
1269G SER* 2.9 32.0 + - - -
----------------------------------------------------------
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Residues in contact with THR1266 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1161G THR* 3.8 23.3 - - - -
1163G VAL* 3.8 21.9 - - + +
1164G PHE* 5.0 5.2 - - - +
1262G ILE* 2.9 28.3 + - - +
1263G ALA* 4.1 1.1 - - - -
1265G ALA* 1.3 76.3 - - - +
1267G SER* 1.3 58.1 + - - +
1269G SER* 3.4 5.8 + - - -
1270G ASN* 2.9 51.2 + - - +
----------------------------------------------------------
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Residues in contact with SER1267 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160G VAL* 4.0 8.2 - - - +
1161G THR* 3.0 22.3 - - - +
1263G ALA* 2.8 23.4 + - - +
1264G ALA* 3.9 2.7 - - - -
1266G THR* 1.3 77.2 - - - +
1268G ILE* 1.3 53.3 + - - +
1270G ASN* 3.3 3.7 + - - +
1271G SER* 2.7 37.4 + - - -
1281G VAL* 3.7 33.2 + - - +
1284G GLY* 5.7 2.8 - - - -
1285G LEU* 5.7 1.0 - - - +
----------------------------------------------------------
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Residues in contact with ILE1268 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323G ILE* 3.9 26.9 - - + -
327G LEU* 3.7 26.5 - - + -
355G ALA* 3.5 48.2 - - + +
356G TYR* 3.6 17.3 - - + -
359G ALA* 5.1 0.7 - - + -
1264G ALA* 3.0 24.8 + - + +
1267G SER* 1.3 73.5 - - - +
1269G SER* 1.3 60.7 + - - +
1271G SER* 3.7 5.8 - - - -
1272G LEU* 2.9 46.9 + - + +
1281G VAL* 4.6 3.8 - - + -
----------------------------------------------------------
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Residues in contact with SER1269 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356G TYR* 3.0 22.7 + - - -
1265G ALA 2.9 15.7 + - - -
1266G THR* 3.6 8.1 - - - -
1268G ILE* 1.3 77.8 - - - +
1270G ASN* 1.3 64.8 + - - +
1272G LEU* 3.7 16.5 + - - +
----------------------------------------------------------
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Residues in contact with ASN1270 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160G VAL 5.3 1.2 + - - +
1161G THR* 4.6 10.1 - - - +
1162G PRO* 5.0 5.7 - - - +
1163G VAL* 5.0 5.4 - - - +
1266G THR* 2.9 41.9 + - - +
1267G SER* 3.9 3.4 - - - +
1269G SER* 1.3 80.2 + - - +
1271G SER* 1.3 67.0 + - - +
1272G LEU 3.2 5.0 - - - -
----------------------------------------------------------
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Residues in contact with SER1271 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327G LEU* 4.0 24.9 - - - -
1267G SER 2.7 23.1 + - - -
1268G ILE 3.7 4.3 - - - -
1270G ASN* 1.3 76.4 - - - +
1272G LEU* 1.3 65.8 + - - +
1277G SER* 3.9 19.0 + - - +
1281G VAL* 3.0 23.4 - - - +
----------------------------------------------------------
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Residues in contact with LEU1272 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326G HIS 5.8 1.3 - - - +
327G LEU* 4.1 17.9 - - + -
355G ALA* 5.5 4.0 - - + -
356G TYR* 4.7 8.7 - - + +
1268G ILE* 2.9 41.3 + - + +
1269G SER* 3.8 14.8 - - - +
1270G ASN 3.2 7.1 - - - -
1271G SER* 1.3 83.2 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il