Contacts of the helix formed by residues 1278 - 1317 (chain E) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA1278 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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324E VAL* 3.8 28.3 - - + +
327E LEU* 4.4 25.1 + - - +
328E GLY* 5.2 3.4 - - - +
573E PRO* 3.8 15.9 - - + -
1039E ASP* 5.6 2.2 - - + +
1277E SER* 1.3 76.4 - - - +
1279E GLY* 1.3 58.3 + - - +
1281E VAL* 3.1 9.9 + - - +
1282E GLY* 3.0 24.8 + - - -
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Residues in contact with GLY1279 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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573E PRO* 3.9 11.0 - - - +
577E PHE* 3.0 35.4 - - - -
1035E ALA* 4.1 20.2 - - - -
1039E ASP* 5.2 4.7 - - - +
1277E SER* 3.5 3.9 + - - -
1278E ALA* 1.3 78.1 - - - +
1280E LEU* 1.3 55.9 + - - +
1283E LEU* 3.0 18.4 + - - +
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Residues in contact with LEU1280 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1035E ALA* 4.5 12.5 - - + +
1156E VAL* 6.4 0.2 - - + -
1159E TYR* 4.4 22.7 - - + +
1160E VAL* 3.3 47.2 - - + +
1277E SER* 3.8 27.9 + - - +
1278E ALA 3.3 0.2 - - - -
1279E GLY* 1.3 75.6 - - - +
1281E VAL* 1.3 58.3 + - + +
1283E LEU* 3.5 8.0 + - + +
1284E GLY 3.0 23.4 + - - -
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Residues in contact with VAL1281 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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323E ILE* 4.4 6.3 - - + -
324E VAL* 5.1 2.2 - - + -
327E LEU* 4.0 22.0 - - + -
1160E VAL* 5.0 3.8 - - + -
1264E ALA 5.6 0.2 - - - +
1267E SER* 3.7 34.1 + - - +
1268E ILE* 4.6 2.5 - - + -
1271E SER* 3.0 28.7 - - - +
1277E SER 3.3 10.5 - - - +
1278E ALA 3.1 7.9 + - - +
1280E LEU* 1.3 77.1 - - + +
1282E GLY* 1.3 57.5 + - - +
1284E GLY* 3.2 2.2 + - - -
1285E LEU* 2.9 45.9 + - + +
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Residues in contact with GLY1282 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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320E ILE* 4.9 2.9 - - - +
324E VAL* 4.3 14.8 - - - +
577E PHE* 3.4 27.1 - - - +
1278E ALA 3.0 12.0 + - - -
1279E GLY 3.3 0.4 + - - -
1281E VAL* 1.3 77.6 - - - +
1283E LEU* 1.3 55.1 + - - +
1285E LEU* 3.3 6.1 + - - +
1286E THR* 2.8 31.7 + - - -
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Residues in contact with LEU1283 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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577E PHE* 3.3 30.2 - - + -
580E LEU* 4.7 9.0 - - + -
1031E ASP* 3.3 47.3 - - + +
1032E TYR* 4.4 4.0 - - - +
1035E ALA* 3.7 15.5 - - + -
1156E VAL* 4.4 20.0 - - + -
1160E VAL* 5.4 0.2 - - + -
1279E GLY 3.0 17.4 + - - +
1280E LEU* 3.8 11.4 - - + +
1282E GLY* 1.3 75.3 - - - +
1284E GLY* 1.3 63.0 + - - +
1286E THR* 3.3 5.2 + - - -
1287E TYR* 3.0 32.5 + - + +
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Residues in contact with GLY1284 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1156E VAL* 4.9 1.8 - - - +
1157E ILE* 3.4 26.4 - - - +
1160E VAL* 4.9 6.6 - - - +
1263E ALA* 5.4 3.4 - - - -
1267E SER* 5.7 2.9 - - - -
1280E LEU 3.0 16.2 + - - -
1281E VAL* 3.2 4.2 + - - -
1283E LEU* 1.3 76.9 - - - +
1285E LEU* 1.3 60.2 + - - +
1287E TYR* 3.4 0.4 + - - -
1288E ALA* 2.9 29.4 + - - +
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Residues in contact with LEU1285 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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320E ILE* 4.2 24.7 - - + -
323E ILE* 4.0 38.4 - - + -
324E VAL* 5.4 0.7 - - + -
362E LEU* 5.6 6.5 - - + -
1260E VAL* 4.3 10.4 - - + +
1263E ALA* 4.5 5.6 - - + +
1264E ALA* 3.8 37.5 - - + +
1267E SER* 5.7 1.1 - - - +
1268E ILE* 5.8 0.2 - - + -
1281E VAL* 2.9 29.1 + - + +
1282E GLY* 3.9 6.3 - - - +
1283E LEU 3.3 0.2 - - - -
1284E GLY* 1.3 75.7 - - - +
1286E THR* 1.3 60.5 + - - +
1288E ALA* 3.3 6.3 + - + +
1289E LEU* 2.9 32.9 + - - +
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Residues in contact with THR1286 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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320E ILE* 4.6 2.0 - - - +
577E PHE* 4.0 12.8 + - - +
580E LEU* 3.7 25.7 - - + +
581E SER* 3.0 28.7 + - - +
584E HIS* 3.8 19.1 - - + +
1282E GLY 2.8 22.8 + - - -
1283E LEU* 3.3 8.8 + - - -
1285E LEU* 1.3 77.3 - - - +
1287E TYR* 1.3 70.2 + - + +
1289E LEU* 3.1 7.6 + - - +
1290E MET* 3.1 24.8 + - + +
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Residues in contact with TYR1287 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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580E LEU* 5.8 2.7 - - + -
584E HIS* 5.0 12.1 - + - -
1027E LEU* 4.4 8.7 + - - +
1028E VAL* 4.6 6.1 - - - -
1031E ASP* 3.7 27.0 - - + +
1149E LEU* 6.5 0.9 - - + -
1152E SER* 4.4 9.2 - - - -
1153E ALA* 3.7 27.6 - - + +
1156E VAL* 3.6 47.1 - - + -
1157E ILE* 4.0 9.0 - - + -
1283E LEU* 3.0 18.3 + - + +
1284E GLY 4.1 2.7 - - - +
1286E THR* 1.3 86.9 - - + +
1288E ALA* 1.3 60.7 + - - +
1290E MET* 3.1 12.8 + - + +
1291E VAL* 3.0 31.0 + - - +
1294E TYR* 5.8 3.1 - + - -
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Residues in contact with ALA1288 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1157E ILE* 3.6 13.4 - - + +
1256E GLY 4.2 0.9 - - - +
1259E VAL* 4.6 4.7 - - + +
1260E VAL* 3.3 41.4 - - + +
1263E ALA* 4.6 4.9 - - + -
1284E GLY 2.9 19.4 + - - +
1285E LEU* 3.5 11.4 - - + +
1287E TYR* 1.3 77.4 - - - +
1289E LEU* 1.3 62.0 + - - +
1291E VAL* 3.3 20.4 - - - +
1292E SER* 4.4 2.1 + - - -
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Residues in contact with LEU1289 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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316E GLY* 5.0 4.3 - - - -
317E PRO* 5.0 10.3 - - + -
320E ILE* 3.6 27.1 - - + -
362E LEU* 5.0 13.9 - - + -
366E LEU* 4.1 34.1 - - + -
370E ARG* 4.2 10.5 + - - +
581E SER* 3.8 21.8 - - - +
585E ILE* 6.0 3.4 - - + -
1260E VAL* 4.6 4.0 - - + -
1285E LEU 2.9 15.5 + - - +
1286E THR 3.1 6.0 + - - +
1288E ALA* 1.3 78.6 - - - +
1290E MET* 1.3 68.3 + - + +
1291E VAL 3.3 1.0 + - - -
1292E SER* 3.6 14.6 + - - -
1293E ASN* 4.6 3.1 + - - -
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Residues in contact with MET1290 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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584E HIS* 3.4 60.1 - - + +
1286E THR* 3.1 16.8 + - - +
1287E TYR* 3.1 14.3 + - + +
1289E LEU* 1.3 81.7 - - - +
1291E VAL* 1.3 63.1 + - - +
1292E SER 3.2 0.5 + - - -
1293E ASN* 3.3 20.3 + - + +
1294E TYR* 3.1 64.0 + - + +
1297E TRP* 6.2 3.1 - - + -
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Residues in contact with VAL1291 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1150E CYS* 3.8 28.0 - - - -
1153E ALA* 4.8 9.9 - - + -
1154E LEU* 4.9 11.4 - - + -
1157E ILE* 5.8 2.2 - - + -
1256E GLY* 4.3 7.2 - - - -
1259E VAL* 3.8 26.2 - - + -
1287E TYR 3.0 12.1 + - - +
1288E ALA* 3.3 20.4 - - - +
1290E MET* 1.3 77.5 - - - +
1292E SER* 1.3 57.8 + - - +
1294E TYR* 3.9 7.6 - - - -
1295E LEU* 3.0 40.6 + - + +
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Residues in contact with SER1292 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366E LEU* 5.9 2.1 - - - +
370E ARG* 3.7 25.1 + - - +
1252E MET 4.6 6.2 - - - +
1253E GLU* 3.7 20.8 + - - +
1256E GLY* 3.3 31.0 - - - -
1257E ALA* 4.1 1.2 + - - -
1260E VAL* 5.4 1.0 - - - +
1288E ALA 4.4 2.3 + - - -
1289E LEU* 3.6 6.3 + - - -
1290E MET 3.2 0.8 - - - -
1291E VAL* 1.3 80.9 - - - +
1293E ASN* 1.3 62.5 + - - +
1295E LEU* 3.7 3.3 + - - +
1296E ASN* 3.5 24.3 + - - -
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Residues in contact with ASN1293 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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370E ARG* 4.2 17.1 + - - +
588E THR* 5.7 2.8 + - - -
1253E GLU* 3.9 14.6 - - - +
1289E LEU 4.8 4.2 + - - -
1290E MET* 3.3 21.9 + - + +
1292E SER* 1.3 74.6 - - - +
1294E TYR* 1.3 70.5 + - + +
1296E ASN* 3.4 6.1 + - - +
1297E TRP* 3.0 53.8 + - + +
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Residues in contact with TYR1294 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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584E HIS* 5.0 5.0 + - - -
1146E SER* 4.4 5.1 - - - +
1149E LEU* 3.5 71.3 - - + +
1150E CYS* 3.9 18.4 - - + -
1153E ALA* 4.6 6.1 - - + -
1287E TYR* 5.8 3.9 - + - -
1290E MET* 3.1 58.8 + - + +
1291E VAL* 3.2 12.3 + - - +
1293E ASN* 1.3 79.7 - - + +
1295E LEU* 1.3 63.1 + - - +
1297E TRP* 3.4 24.2 + + - +
1298E MET* 3.0 30.9 + - - +
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Residues in contact with LEU1295 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1150E CYS* 4.5 9.6 - - - -
1175E CYS* 4.5 27.4 - - + -
1252E MET* 3.8 31.2 - - + +
1255E ILE* 5.0 4.3 - - + -
1256E GLY* 4.9 8.7 - - - +
1291E VAL* 3.0 30.2 + - + +
1292E SER 4.1 3.8 - - - +
1293E ASN 3.3 0.2 - - - -
1294E TYR* 1.3 72.7 - - - +
1296E ASN* 1.3 66.8 + - - +
1298E MET* 3.4 20.5 + - + +
1299E VAL* 3.0 36.3 + - + +
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Residues in contact with ASN1296 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1248E LEU* 4.6 4.7 - - - +
1249E GLU* 3.2 47.5 + - + +
1252E MET* 3.2 14.8 - - - +
1253E GLU* 3.2 28.5 + - - +
1292E SER 3.5 11.8 + - - -
1293E ASN* 3.4 9.5 + - - +
1295E LEU* 1.3 80.8 - - - +
1297E TRP* 1.3 70.7 + - + +
1299E VAL* 3.8 3.3 - - - +
1300E ARG* 2.9 30.1 + - - +
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Residues in contact with TRP1297 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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588E THR* 4.9 14.1 - - + -
1145E ARG* 5.2 13.5 - - - -
1146E SER* 3.4 25.8 - - - +
1149E LEU* 5.5 4.5 - - + -
1290E MET* 6.2 2.5 - - + -
1293E ASN* 3.0 37.0 + - + +
1294E TYR* 3.8 26.0 - + - +
1296E ASN* 1.3 85.8 - - + +
1298E MET* 1.3 63.0 + - - +
1300E ARG* 4.0 24.8 - - - +
1301E ASN* 2.8 38.7 + - - +
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Residues in contact with MET1298 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1143E LEU* 3.4 13.5 - - + +
1146E SER* 3.7 23.8 - - - +
1147E THR* 3.6 33.4 - - - +
1150E CYS* 3.7 23.8 - - + -
1294E TYR 3.0 23.4 + - - +
1295E LEU* 3.7 27.8 - - + +
1297E TRP* 1.3 76.2 - - - +
1299E VAL* 1.3 60.3 + - + +
1302E LEU* 2.8 31.3 + - - +
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Residues in contact with VAL1299 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1175E CYS 5.9 0.4 - - - +
1178E ILE* 6.1 0.4 - - + -
1179E GLN* 4.8 29.6 - - + +
1182E PHE* 3.6 15.9 - - + -
1183E ARG* 5.3 2.6 - - + +
1248E LEU* 3.4 40.8 - - + -
1252E MET* 5.9 1.3 - - + -
1295E LEU* 3.0 28.1 + - + +
1296E ASN* 4.0 2.2 - - - +
1298E MET* 1.3 77.0 - - + +
1300E ARG* 1.3 63.9 + - - +
1302E LEU* 3.0 8.4 + - + +
1303E ALA* 2.9 22.2 + - - +
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Residues in contact with ARG1300 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1182E PHE* 4.7 16.6 - - + -
1245E ASN* 5.5 6.5 - - + +
1246E ARG* 5.7 1.8 - - - +
1248E LEU* 4.8 4.4 - - + +
1296E ASN* 2.9 20.5 + - - +
1297E TRP* 4.0 24.9 - - - +
1299E VAL* 1.3 76.3 - - - +
1301E ASN* 1.3 77.8 + - - +
1303E ALA* 3.4 2.3 + - - +
1304E ASP* 3.0 23.8 + - - +
2001E GBM 4.5 43.8 + - - -
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Residues in contact with ASN1301 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1139E THR* 3.9 11.8 - - + +
1142E CYS* 3.2 35.3 + - - +
1143E LEU* 3.7 29.4 - - + +
1146E SER* 4.6 0.6 + - - -
1297E TRP* 2.8 34.5 + - - +
1300E ARG* 1.3 92.5 + - - +
1302E LEU* 1.3 59.1 + - - +
1304E ASP* 3.8 5.9 - - - +
1305E MET* 2.9 34.7 + - - +
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Residues in contact with LEU1302 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1143E LEU* 3.9 18.6 - - + +
1179E GLN* 3.4 32.1 - - + +
1183E ARG* 3.7 24.7 - - + -
1298E MET 2.8 18.9 + - - +
1299E VAL* 3.3 7.4 - - - +
1301E ASN* 1.3 77.8 - - - +
1303E ALA* 1.3 58.6 + - - +
1305E MET* 3.4 2.4 + - + +
1306E GLU* 2.9 31.7 + - + +
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Residues in contact with ALA1303 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1182E PHE* 3.6 33.7 - - + -
1183E ARG* 4.3 15.5 - - + +
1186E SER* 4.0 15.3 - - - +
1187E ARG* 4.7 1.5 - - + +
1299E VAL 2.9 8.9 + - - +
1300E ARG 3.9 2.5 - - - +
1302E LEU* 1.3 76.4 - - - +
1304E ASP* 1.3 62.2 + - - +
1306E GLU* 3.3 8.3 + - - +
1307E ILE* 3.0 29.5 + - + +
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Residues in contact with ASP1304 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1135E HIS* 5.8 0.2 - - - +
1139E THR* 3.7 11.7 + - + +
1300E ARG 3.0 17.4 + - - +
1301E ASN* 3.8 7.9 - - - +
1303E ALA* 1.3 77.4 - - - +
1305E MET* 1.3 78.8 + - - +
1307E ILE* 3.3 11.3 + - - +
1308E GLN* 2.8 48.2 + - - +
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Residues in contact with MET1305 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1135E HIS 4.1 0.2 - - - +
1136E ILE* 3.7 25.6 - - + +
1139E THR* 3.7 25.8 - - + -
1140E LEU* 3.8 39.3 - - + +
1143E LEU* 4.5 9.4 - - + -
1301E ASN 2.9 20.3 + - - +
1302E LEU* 4.0 3.8 - - + +
1304E ASP* 1.3 90.1 - - - +
1306E GLU* 1.3 60.3 + - - +
1308E GLN* 3.3 29.2 - - + +
1309E LEU* 2.9 45.6 + - + +
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Residues in contact with GLU1306 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1183E ARG* 3.2 51.4 + - - +
1187E ARG* 3.1 45.3 + - - +
1302E LEU* 2.9 20.1 + - + +
1303E ALA* 3.3 5.4 + - - +
1305E MET* 1.3 76.5 - - - +
1307E ILE* 1.3 63.2 + - - +
1309E LEU* 4.2 6.2 + - - +
1310E GLY* 4.3 4.3 + - - -
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Residues in contact with ILE1307 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1186E SER* 4.2 4.5 - - - +
1187E ARG* 3.7 34.1 - - + +
1190E GLN* 3.7 39.3 - - + -
1191E GLN* 5.2 11.0 - - + +
1194E ASP* 6.0 0.4 - - - +
1303E ALA 3.0 18.2 + - - +
1304E ASP* 3.5 12.6 - - - +
1306E GLU* 1.3 77.3 - - - +
1308E GLN* 1.3 67.8 + - + +
1310E GLY* 2.9 22.5 + - - -
1311E ALA 4.3 1.0 + - - -
1314E ARG* 5.8 0.5 + - - -
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Residues in contact with GLN1308 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1131E THR* 3.6 22.8 - - + +
1135E HIS* 3.4 31.1 - - - +
1136E ILE* 3.4 18.7 - - + +
1304E ASP* 2.8 43.6 + - - +
1305E MET* 3.2 23.6 + - + +
1307E ILE* 1.3 81.4 - - + +
1309E LEU* 1.3 62.0 + - - +
1310E GLY 3.2 0.6 + - - -
1311E ALA* 3.7 16.3 - - - +
1312E VAL* 4.1 0.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU1309 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1001E CYS* 3.9 30.5 - - + -
1004E TYR* 5.4 8.7 - - + -
1136E ILE* 4.1 18.2 - - + -
1140E LEU* 5.4 9.9 - - + -
1305E MET* 2.9 32.0 + - + +
1306E GLU* 4.8 4.7 - - - +
1307E ILE 3.1 0.4 + - - -
1308E GLN* 1.3 76.9 - - - +
1310E GLY* 1.3 60.3 + - - +
1311E ALA 3.1 1.8 - - - -
1312E VAL* 3.1 26.8 + - + +
1313E LYS* 2.9 25.5 + - - +
----------------------------------------------------------
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Residues in contact with GLY1310 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1306E GLU 4.3 3.8 + - - -
1307E ILE 2.9 14.3 + - - -
1309E LEU* 1.3 74.7 - - - +
1311E ALA* 1.3 57.8 + - - +
1313E LYS* 3.5 13.3 - - - +
1314E ARG* 2.9 43.4 + - - +
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Residues in contact with ALA1311 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1128E ASP* 3.3 33.6 - - + +
1131E THR* 4.2 14.8 - - + +
1132E ILE* 4.9 0.7 - - + -
1307E ILE 4.3 1.4 + - - -
1308E GLN* 3.7 16.3 + - - +
1309E LEU 3.1 0.2 - - - -
1310E GLY* 1.3 76.5 - - - +
1312E VAL* 1.3 58.9 + - + +
1314E ARG* 3.1 22.7 + - - +
1315E ILE* 2.9 31.6 + - - +
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Residues in contact with VAL1312 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003E LYS* 5.6 4.7 - - + -
1004E TYR* 4.6 26.5 - - + +
1132E ILE* 3.7 31.0 - - + -
1136E ILE* 3.8 18.2 - - + -
1308E GLN 4.1 0.4 - - - +
1309E LEU* 3.1 22.1 + - + +
1311E ALA* 1.3 75.5 - - - +
1313E LYS* 1.3 57.1 + - - +
1315E ILE* 3.3 8.8 + - + +
1316E HIS* 2.9 27.5 + - + +
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Residues in contact with LYS1313 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1000E ALA 5.2 14.9 - - - +
1309E LEU 2.9 13.2 + - - +
1310E GLY* 3.5 14.4 - - - +
1311E ALA 3.2 0.2 - - - -
1312E VAL* 1.3 78.5 - - - +
1314E ARG* 1.3 57.0 + - + +
1316E HIS* 3.1 9.3 + - + +
1317E ALA* 2.9 25.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG1314 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1124E ARG* 3.5 37.1 + - - +
1127E SER* 4.2 6.3 + - - -
1128E ASP* 2.4 40.6 + - - +
1131E THR* 5.6 0.8 + - - -
1307E ILE 5.8 0.4 + - - -
1310E GLY* 2.9 28.7 + - - +
1311E ALA* 3.1 19.1 + - - +
1313E LYS* 1.3 73.7 - - + +
1315E ILE* 1.3 65.5 + - - +
1317E ALA* 3.3 20.6 + - - +
----------------------------------------------------------
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Residues in contact with ILE1315 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1097E LEU* 4.5 21.8 - - + +
1101E LEU* 4.4 23.7 - - + +
1124E ARG* 4.2 14.1 - - + +
1125E PHE* 5.2 2.7 - - - +
1128E ASP* 3.6 29.6 - - + +
1129E CYS* 5.2 2.0 - - + +
1132E ILE* 4.2 13.7 - - + -
1311E ALA 2.9 20.0 + - - +
1312E VAL* 3.6 10.1 - - + +
1314E ARG* 1.3 77.2 - - - +
1316E HIS* 1.3 63.2 + - - +
1317E ALA 3.3 6.8 + - - +
1318E LEU* 3.8 11.4 - - - +
----------------------------------------------------------
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Residues in contact with HIS1316 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003E LYS* 3.8 29.9 - - + +
1312E VAL* 2.9 17.5 + - + +
1313E LYS* 3.1 10.7 + - + +
1315E ILE* 1.3 73.9 - - - +
1317E ALA* 1.3 60.3 + - - +
1318E LEU* 3.0 26.1 + - + +
----------------------------------------------------------
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Residues in contact with ALA1317 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1124E ARG* 3.6 18.1 + - - +
1313E LYS 2.9 12.1 + - - +
1314E ARG* 3.3 21.4 - - - +
1315E ILE 3.2 5.1 - - - +
1316E HIS* 1.3 73.9 - - - +
1318E LEU* 1.3 62.4 + - - +
1319E LEU* 5.8 0.3 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il