Contacts of the helix formed by residues 1278 - 1317 (chain G) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA1278 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324G VAL* 3.8 28.5 - - + +
327G LEU* 4.4 25.1 + - + +
328G GLY* 5.2 3.6 - - - +
573G PRO* 3.8 15.7 - - + -
1039G ASP* 5.6 3.1 - - + +
1277G SER* 1.3 77.0 - - - +
1279G GLY* 1.3 59.1 + - - +
1281G VAL* 3.1 9.6 + - - +
1282G GLY* 3.0 24.4 + - - -
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Residues in contact with GLY1279 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
573G PRO* 3.9 10.3 - - - +
577G PHE* 3.0 36.4 - - - -
1035G ALA* 4.1 20.0 - - - -
1039G ASP* 5.2 4.1 - - - +
1277G SER* 3.5 4.0 + - - -
1278G ALA* 1.3 79.0 - - - +
1280G LEU* 1.3 57.6 + - - +
1283G LEU* 3.0 17.5 + - - +
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Residues in contact with LEU1280 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1035G ALA* 4.5 12.5 - - + +
1159G TYR* 4.4 22.2 - - + +
1160G VAL* 3.3 48.2 - - + +
1277G SER* 3.8 26.8 + - - +
1278G ALA 3.3 0.6 - - - -
1279G GLY* 1.3 75.1 - - - +
1281G VAL* 1.3 57.9 + - + +
1283G LEU* 3.8 8.1 - - + +
1284G GLY* 3.0 23.2 + - - -
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Residues in contact with VAL1281 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323G ILE* 4.4 6.3 - - + -
324G VAL* 5.1 1.6 - - + -
327G LEU* 4.0 22.2 - - + -
1160G VAL* 5.0 3.6 - - + -
1264G ALA* 5.9 0.2 - - - -
1267G SER* 3.7 34.8 + - - +
1268G ILE* 4.6 2.7 - - + -
1271G SER* 3.0 28.3 - - - +
1277G SER 3.3 11.7 - - - +
1278G ALA 3.1 8.0 + - - +
1280G LEU* 1.3 77.3 - - - +
1282G GLY* 1.3 57.3 + - - +
1284G GLY* 3.2 1.9 + - - -
1285G LEU* 2.9 45.4 + - + +
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Residues in contact with GLY1282 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320G ILE* 4.9 3.8 - - - +
324G VAL* 4.3 14.1 - - - +
577G PHE* 3.4 27.3 - - - +
1278G ALA 3.0 11.8 + - - -
1279G GLY 3.3 0.8 + - - -
1281G VAL* 1.3 77.0 - - - +
1283G LEU* 1.3 56.5 + - - +
1285G LEU* 3.3 5.8 + - - +
1286G THR* 2.8 32.6 + - - -
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Residues in contact with LEU1283 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
577G PHE* 3.3 29.8 - - + -
580G LEU* 4.7 8.5 - - + -
1031G ASP* 3.3 48.0 - - + +
1032G TYR* 4.4 3.4 - - - +
1035G ALA* 3.7 15.7 - - + -
1156G VAL* 4.4 20.9 - - + -
1160G VAL* 5.4 0.2 - - + -
1279G GLY 3.0 18.4 + - - +
1280G LEU* 3.8 11.9 - - + +
1282G GLY* 1.3 75.3 - - - +
1284G GLY* 1.3 62.7 + - - +
1286G THR* 3.3 5.3 + - - -
1287G TYR* 3.0 33.1 + - + +
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Residues in contact with GLY1284 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156G VAL* 5.1 1.6 - - - -
1157G ILE* 3.4 27.2 - - - +
1160G VAL* 4.9 6.8 - - - +
1263G ALA* 5.4 3.6 - - - -
1267G SER* 5.7 3.1 - - - -
1280G LEU 3.0 16.2 + - - -
1281G VAL* 3.6 4.0 - - - -
1283G LEU* 1.3 76.3 - - - +
1285G LEU* 1.3 58.7 + - - +
1287G TYR* 3.4 0.6 + - - -
1288G ALA* 2.9 29.2 + - - +
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Residues in contact with LEU1285 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320G ILE* 4.2 24.9 - - + -
323G ILE* 4.0 38.8 - - + -
324G VAL* 5.4 0.7 - - + -
362G LEU* 5.6 6.3 - - + -
1260G VAL* 4.3 10.0 - - + +
1263G ALA* 4.5 5.4 - - + +
1264G ALA* 3.8 36.6 - - + +
1267G SER* 5.7 1.6 - - - +
1268G ILE* 5.8 0.2 - - + -
1281G VAL* 2.9 30.2 + - + +
1282G GLY* 3.3 6.7 + - - +
1284G GLY* 1.3 76.5 - - - +
1286G THR* 1.3 61.2 + - - +
1288G ALA* 3.3 7.2 + - + +
1289G LEU* 2.9 34.1 + - - +
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Residues in contact with THR1286 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320G ILE* 4.6 2.1 - - - +
577G PHE* 4.0 13.0 + - - +
580G LEU* 3.7 25.4 - - + +
581G SER* 3.0 29.0 + - - +
584G HIS* 3.8 19.1 - - + +
1282G GLY 2.8 22.3 + - - -
1283G LEU* 3.5 9.0 - - - -
1285G LEU* 1.3 76.8 - - - +
1287G TYR* 1.3 69.8 + - + +
1289G LEU* 3.1 7.6 + - - +
1290G MET* 3.1 24.9 + - + +
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Residues in contact with TYR1287 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
580G LEU* 5.8 2.9 - - + -
584G HIS* 5.0 12.1 - + - -
1027G LEU* 4.4 9.2 + - - +
1028G VAL* 4.6 6.4 - - - -
1031G ASP* 3.7 25.8 - - + +
1149G LEU* 6.5 0.9 - - + -
1152G SER* 4.4 9.1 - - - -
1153G ALA* 3.7 29.1 - - + +
1156G VAL* 3.6 46.0 - - + -
1157G ILE* 4.0 8.3 - - + -
1283G LEU* 3.0 19.6 + - + +
1284G GLY 4.1 2.7 - - - +
1286G THR* 1.3 87.6 - - + +
1288G ALA* 1.3 60.3 + - - +
1290G MET* 3.1 11.8 + - + +
1291G VAL* 3.0 31.2 + - - +
1294G TYR* 5.8 4.0 - + - -
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Residues in contact with ALA1288 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157G ILE* 3.6 12.9 - - + +
1256G GLY 4.2 0.7 - - - +
1259G VAL* 4.6 5.2 - - + +
1260G VAL* 3.3 41.7 - - + +
1263G ALA* 4.6 4.3 - - + -
1284G GLY 2.9 18.2 + - - +
1285G LEU* 3.5 12.1 - - + +
1286G THR 3.2 0.2 - - - -
1287G TYR* 1.3 76.8 - - - +
1289G LEU* 1.3 61.4 + - - +
1291G VAL* 3.3 21.2 - - - +
1292G SER* 4.4 1.9 + - - -
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Residues in contact with LEU1289 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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316G GLY* 5.0 4.0 - - - -
317G PRO* 5.0 9.9 - - + -
320G ILE* 3.6 27.8 - - + -
362G LEU* 5.0 15.0 - - + -
366G LEU* 4.1 33.4 - - + -
370G ARG* 4.2 9.9 + - - +
581G SER* 3.8 22.2 - - - +
585G ILE* 6.0 3.4 - - + -
1260G VAL* 4.6 4.0 - - + -
1285G LEU* 2.9 15.8 + - + +
1286G THR 3.3 6.1 - - - +
1288G ALA* 1.3 79.0 - - - +
1290G MET* 1.3 69.3 + - + +
1291G VAL 3.3 0.9 + - - -
1292G SER* 3.6 15.6 + - - -
1293G ASN* 4.6 3.1 + - - -
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Residues in contact with MET1290 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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584G HIS* 3.4 58.8 - - + +
1286G THR* 3.1 17.3 + - + +
1287G TYR* 3.1 13.6 + - + +
1289G LEU* 1.3 81.9 - - - +
1291G VAL* 1.3 63.4 + - - +
1292G SER 3.2 0.9 + - - -
1293G ASN* 3.3 19.9 + - + +
1294G TYR* 3.1 63.8 + - + +
1297G TRP* 6.2 3.6 - - + -
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Residues in contact with VAL1291 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1150G CYS* 3.8 28.9 - - - -
1153G ALA* 4.8 9.2 - - + -
1154G LEU* 4.9 11.4 - - + -
1157G ILE* 5.8 2.9 - - + -
1256G GLY* 4.3 7.0 - - - -
1259G VAL* 3.8 25.6 - - + -
1287G TYR 3.0 12.5 + - - +
1288G ALA* 3.3 21.1 - - - +
1289G LEU 3.2 0.2 - - - -
1290G MET* 1.3 77.6 - - - +
1292G SER* 1.3 58.1 + - - +
1294G TYR* 3.9 7.4 - - - -
1295G LEU* 3.0 40.1 + - + +
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Residues in contact with SER1292 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366G LEU* 5.9 1.9 - - - +
370G ARG* 3.7 24.8 + - - +
1252G MET 4.6 6.0 - - - +
1253G GLU* 3.7 21.2 + - - +
1256G GLY* 3.3 31.4 + - - -
1257G ALA 4.1 1.2 + - - -
1260G VAL* 5.4 1.0 - - - +
1288G ALA 4.4 2.9 + - - -
1289G LEU 3.6 6.4 + - - -
1290G MET 3.2 1.0 - - - -
1291G VAL* 1.3 80.9 - - - +
1293G ASN* 1.3 61.9 + - - +
1295G LEU* 3.7 3.2 + - - +
1296G ASN* 3.5 24.3 + - - -
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Residues in contact with ASN1293 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370G ARG* 4.2 15.6 + - - +
588G THR* 5.7 3.2 + - - -
1253G GLU* 3.9 13.9 - - - +
1289G LEU 4.8 4.0 + - - -
1290G MET* 3.3 21.1 + - + +
1292G SER* 1.3 75.2 - - - +
1294G TYR* 1.3 70.3 + - + +
1296G ASN* 3.4 6.2 + - - +
1297G TRP* 3.0 52.2 + - + +
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Residues in contact with TYR1294 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584G HIS* 5.0 5.0 + - - -
1146G SER* 4.4 5.6 - - - +
1149G LEU* 3.5 70.2 - - + +
1150G CYS* 3.9 17.9 - - + -
1153G ALA* 4.6 6.7 - - + -
1287G TYR* 5.8 4.6 - + - -
1290G MET* 3.1 56.9 + - + +
1291G VAL* 3.2 12.3 + - - +
1293G ASN* 1.3 81.0 - - + +
1295G LEU* 1.3 61.9 + - - +
1297G TRP* 3.4 24.4 + + - +
1298G MET* 3.0 31.6 + - - +
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Residues in contact with LEU1295 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1150G CYS* 4.5 9.4 - - - -
1175G CYS* 4.5 27.6 - - + -
1252G MET* 3.8 31.9 - - + +
1255G ILE* 5.0 4.5 - - + -
1256G GLY* 4.9 8.5 - - - +
1291G VAL* 3.0 31.0 + - + +
1292G SER 4.1 3.6 - - - +
1293G ASN 3.3 0.2 - - - -
1294G TYR* 1.3 71.7 - - - +
1296G ASN* 1.3 66.3 + - - +
1298G MET* 3.4 21.0 + - + +
1299G VAL* 3.0 34.0 + - + +
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Residues in contact with ASN1296 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1248G LEU* 4.2 4.7 - - - +
1249G GLU* 3.2 47.8 + - + +
1252G MET* 3.2 14.8 - - - +
1253G GLU* 3.2 28.5 + - - +
1292G SER 3.5 10.9 + - - -
1293G ASN* 3.4 10.1 + - - +
1294G TYR 3.3 0.6 - - - -
1295G LEU* 1.3 79.4 - - - +
1297G TRP* 1.3 71.1 + - + +
1299G VAL* 3.8 3.3 - - - +
1300G ARG* 2.9 31.2 + - - +
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Residues in contact with TRP1297 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
588G THR* 4.9 14.6 - - + -
1145G ARG* 5.2 13.7 - - - -
1146G SER* 3.4 25.4 - - - +
1149G LEU* 5.5 4.5 - - + -
1290G MET* 6.2 2.9 - - + -
1293G ASN* 3.0 36.5 + - + +
1294G TYR* 3.8 25.6 - + - +
1296G ASN* 1.3 84.7 - - + +
1298G MET* 1.3 64.2 + - - +
1300G ARG* 4.0 25.2 - - - +
1301G ASN* 2.8 38.9 + - - +
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Residues in contact with MET1298 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1143G LEU* 3.4 13.6 - - + +
1146G SER* 3.7 24.0 - - - +
1147G THR* 3.6 34.5 - - - +
1150G CYS* 3.7 24.9 - - + -
1294G TYR 3.0 23.6 + - - +
1295G LEU* 3.7 26.5 - - + +
1297G TRP* 1.3 77.4 - - - +
1299G VAL* 1.3 59.4 + - + +
1302G LEU* 2.8 31.8 + - - +
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Residues in contact with VAL1299 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1175G CYS 5.9 0.4 - - - +
1178G ILE* 6.1 0.4 - - + -
1179G GLN* 4.8 28.7 - - + +
1182G PHE* 3.6 15.3 - - + -
1183G ARG* 5.4 3.1 - - + +
1248G LEU* 3.4 40.8 - - + -
1252G MET* 5.9 1.6 - - + -
1295G LEU* 3.0 27.6 + - + +
1296G ASN* 4.0 1.8 - - - +
1298G MET* 1.3 77.0 - - + +
1300G ARG* 1.3 64.5 + - - +
1302G LEU* 3.0 8.2 + - + +
1303G ALA* 2.9 22.9 + - - +
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Residues in contact with ARG1300 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1182G PHE* 4.7 17.5 - - + -
1245G ASN* 5.5 6.7 - - + +
1246G ARG* 5.7 1.6 - - - +
1248G LEU* 4.8 4.0 - - + +
1296G ASN* 2.9 19.3 + - - +
1297G TRP* 4.0 24.2 - - - +
1299G VAL* 1.3 77.8 - - - +
1301G ASN* 1.3 78.0 + - - +
1303G ALA* 3.4 1.9 + - - +
1304G ASP* 3.0 24.1 + - - +
2001G GBM 4.5 45.1 + - - -
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Residues in contact with ASN1301 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1139G THR* 3.9 12.2 - - + +
1142G CYS* 3.2 33.3 + - - +
1143G LEU* 3.7 29.8 - - + +
1146G SER* 4.6 0.4 + - - -
1297G TRP* 2.8 36.4 + - - +
1300G ARG* 1.3 92.2 + - - +
1302G LEU* 1.3 56.9 + - - +
1304G ASP* 3.8 6.1 - - - +
1305G MET* 2.9 34.5 + - - +
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Residues in contact with LEU1302 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1143G LEU* 3.9 18.8 - - + +
1179G GLN* 3.4 31.9 - - + +
1183G ARG* 3.7 25.1 - - + -
1298G MET 2.8 20.1 + - - +
1299G VAL* 3.0 8.3 + - + +
1301G ASN* 1.3 78.3 - - - +
1303G ALA* 1.3 58.2 + - - +
1305G MET* 3.4 2.6 + - + +
1306G GLU* 2.9 31.0 + - + +
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Residues in contact with ALA1303 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1182G PHE* 3.6 33.9 - - + -
1183G ARG* 4.3 16.2 - - + +
1186G SER* 4.0 15.5 - - - +
1187G ARG* 4.7 1.7 - - + +
1299G VAL 2.9 9.1 + - - +
1300G ARG 3.9 2.5 - - - +
1302G LEU* 1.3 76.2 - - - +
1304G ASP* 1.3 63.3 + - - +
1306G GLU* 3.3 8.8 + - - +
1307G ILE* 3.0 29.5 + - + +
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Residues in contact with ASP1304 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1135G HIS* 5.8 0.2 - - - +
1139G THR* 3.7 11.7 + - + +
1300G ARG 3.0 17.6 + - - +
1301G ASN* 3.8 7.6 - - - +
1303G ALA* 1.3 77.6 - - - +
1305G MET* 1.3 79.1 + - - +
1307G ILE* 3.3 10.7 + - - +
1308G GLN* 2.8 48.2 + - - +
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Residues in contact with MET1305 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1136G ILE* 3.7 24.5 - - + +
1139G THR* 3.7 25.4 - - + -
1140G LEU* 3.8 38.6 - - + +
1143G LEU* 4.5 9.6 - - + -
1301G ASN 2.9 20.7 + - - +
1302G LEU* 4.0 3.8 - - + +
1304G ASP* 1.3 90.0 - - - +
1306G GLU* 1.3 60.4 + - - +
1308G GLN* 3.3 29.4 - - + +
1309G LEU* 2.9 46.7 + - + +
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Residues in contact with GLU1306 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1183G ARG* 3.2 52.1 + - - +
1187G ARG* 3.1 45.2 + - - +
1302G LEU* 2.9 20.3 + - + +
1303G ALA* 3.6 5.5 - - - +
1305G MET* 1.3 76.7 - - - +
1307G ILE* 1.3 62.8 + - - +
1309G LEU* 4.2 6.5 + - - +
1310G GLY* 4.3 4.0 + - - -
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Residues in contact with ILE1307 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1186G SER* 4.2 5.4 - - - +
1187G ARG* 3.7 34.8 - - + +
1190G GLN* 3.7 39.0 - - + -
1191G GLN* 5.2 10.3 - - + +
1194G ASP* 6.0 1.1 - - - +
1303G ALA 3.0 16.9 + - - +
1304G ASP* 3.5 11.9 - - - +
1306G GLU* 1.3 77.7 - - - +
1308G GLN* 1.3 67.8 + - + +
1310G GLY* 2.9 22.7 + - - -
1311G ALA 4.3 1.0 + - - -
1314G ARG* 5.8 0.3 + - - -
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Residues in contact with GLN1308 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1131G THR* 3.6 21.2 - - + +
1135G HIS* 3.4 30.5 - - - +
1136G ILE* 3.4 17.7 - - + +
1304G ASP* 2.8 43.5 + - - +
1305G MET* 3.2 25.2 + - + +
1307G ILE* 1.3 80.6 - - + +
1309G LEU* 1.3 61.8 + - - +
1310G GLY 3.2 0.4 + - - -
1311G ALA* 3.7 15.8 - - - +
1312G VAL* 4.1 0.2 - - - +
----------------------------------------------------------
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Residues in contact with LEU1309 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1001G CYS* 3.9 29.4 - - + -
1004G TYR* 5.4 9.0 - - + -
1136G ILE* 4.1 18.8 - - + -
1140G LEU* 5.4 10.1 - - + -
1305G MET* 2.9 31.2 + - + +
1306G GLU* 4.8 4.5 - - - +
1307G ILE 3.1 0.4 + - - -
1308G GLN* 1.3 76.8 - - - +
1310G GLY* 1.3 61.3 + - - +
1311G ALA 3.1 2.0 - - - -
1312G VAL* 3.1 26.2 + - + +
1313G LYS* 2.9 25.8 + - - +
----------------------------------------------------------
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Residues in contact with GLY1310 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1306G GLU 4.3 3.8 + - - -
1307G ILE 2.9 14.0 + - - -
1309G LEU* 1.3 75.7 - - - +
1311G ALA* 1.3 58.9 + - - +
1313G LYS* 3.3 13.1 + - - +
1314G ARG* 2.9 43.6 + - - +
----------------------------------------------------------
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Residues in contact with ALA1311 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1128G ASP* 3.3 34.5 - - + +
1131G THR* 4.2 15.5 - - + +
1132G ILE* 4.9 0.4 - - + -
1307G ILE 4.3 1.2 + - - -
1308G GLN* 3.7 15.0 + - - +
1309G LEU 3.1 0.6 - - - -
1310G GLY* 1.3 77.2 - - - +
1312G VAL* 1.3 59.0 + - + +
1314G ARG* 3.1 22.1 + - - +
1315G ILE* 2.9 31.9 + - - +
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Residues in contact with VAL1312 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003G LYS* 5.6 4.5 - - + -
1004G TYR* 4.6 25.8 - - + +
1132G ILE* 3.7 30.7 - - + -
1136G ILE* 3.8 19.1 - - + -
1308G GLN 4.1 1.1 - - - +
1309G LEU* 3.1 21.9 + - + +
1311G ALA* 1.3 75.3 - - - +
1313G LYS* 1.3 57.5 + - - +
1315G ILE* 3.3 10.3 + - + +
1316G HIS* 2.9 28.8 + - + +
----------------------------------------------------------
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Residues in contact with LYS1313 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1000G ALA 5.2 14.7 - - - +
1309G LEU 2.9 13.1 + - - +
1310G GLY* 3.5 14.4 - - - +
1312G VAL* 1.3 78.3 - - - +
1314G ARG* 1.3 56.9 + - + +
1316G HIS* 3.1 9.6 + - + +
1317G ALA* 2.9 26.0 + - - +
----------------------------------------------------------
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Residues in contact with ARG1314 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1124G ARG* 3.5 37.7 + - - +
1127G SER* 4.2 6.7 + - - -
1128G ASP* 2.4 39.3 + - - +
1131G THR* 5.6 0.8 + - - -
1307G ILE 5.8 0.2 + - - -
1310G GLY* 2.9 28.9 + - - +
1311G ALA* 3.1 18.8 + - - +
1313G LYS* 1.3 73.6 - - + +
1315G ILE* 1.3 66.1 + - - +
1317G ALA* 3.3 20.3 + - - +
----------------------------------------------------------
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Residues in contact with ILE1315 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1097G LEU* 4.5 21.3 - - + +
1101G LEU* 4.4 24.2 - - + +
1124G ARG* 4.2 15.0 - - + +
1125G PHE* 5.4 2.2 - - - -
1128G ASP* 3.6 28.9 - - + +
1129G CYS* 5.2 2.2 - - + +
1132G ILE* 4.2 12.6 - - + -
1311G ALA 2.9 19.2 + - - +
1312G VAL* 3.6 10.3 - - + +
1314G ARG* 1.3 76.7 - - - +
1316G HIS* 1.3 62.6 + - - +
1317G ALA 3.3 6.8 + - - +
1318G LEU* 3.8 11.6 - - - +
----------------------------------------------------------
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Residues in contact with HIS1316 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003G LYS* 3.8 29.8 - - + +
1312G VAL* 2.9 17.5 + - + +
1313G LYS* 3.1 11.1 + - + +
1315G ILE* 1.3 74.6 - - - +
1317G ALA* 1.3 61.5 + - - +
1318G LEU* 3.0 26.3 + - + +
----------------------------------------------------------
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Residues in contact with ALA1317 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1124G ARG* 3.6 18.5 + - - +
1313G LYS 2.9 11.2 + - - +
1314G ARG* 3.3 22.5 - - - +
1315G ILE 3.2 5.3 - - - +
1316G HIS* 1.3 76.2 - - - +
1318G LEU* 1.3 62.3 + - - +
1319G LEU* 5.8 0.2 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il