Contacts of the helix formed by residues 1278 - 1317 (chain H) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA1278 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324H VAL* 3.8 28.1 - - + +
327H LEU* 4.4 25.3 + - + +
328H GLY* 5.2 2.7 - - - +
573H PRO* 3.8 15.4 - - + +
1039H ASP* 5.6 2.8 - - + +
1277H SER* 1.3 77.1 - - - +
1279H GLY* 1.3 59.0 + - - +
1281H VAL* 3.1 10.2 + - - +
1282H GLY* 3.0 24.6 + - - -
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Residues in contact with GLY1279 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
573H PRO* 3.9 10.3 - - - +
577H PHE* 3.0 35.8 - - - -
1035H ALA* 4.1 20.2 - - - -
1039H ASP* 5.2 3.8 - - - +
1277H SER* 3.5 4.2 + - - -
1278H ALA* 1.3 78.3 - - - +
1280H LEU* 1.3 56.4 + - - +
1283H LEU* 3.0 18.2 + - - +
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Residues in contact with LEU1280 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1035H ALA* 4.5 12.1 - - + +
1159H TYR* 4.4 22.0 - - + +
1160H VAL* 3.3 46.8 - - + +
1277H SER* 3.8 26.1 + - - +
1278H ALA 3.3 0.6 - - - -
1279H GLY* 1.3 76.0 - - - +
1281H VAL* 1.3 57.8 + - + +
1283H LEU* 3.5 8.1 + - + +
1284H GLY 3.0 23.2 + - - -
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Residues in contact with VAL1281 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323H ILE* 4.4 6.5 - - + -
324H VAL* 5.1 2.0 - - + -
327H LEU* 4.0 21.8 - - + -
1160H VAL* 4.6 4.0 - - + -
1264H ALA 5.6 0.2 - - - +
1267H SER* 3.7 34.2 + - - +
1268H ILE* 4.6 2.7 - - + -
1271H SER* 3.0 28.0 - - - +
1277H SER 3.3 11.7 - - - +
1278H ALA 3.1 7.7 + - - +
1280H LEU* 1.3 77.4 - - + +
1282H GLY* 1.3 57.3 + - - +
1284H GLY* 3.2 1.8 + - - -
1285H LEU* 2.9 46.0 + - + +
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Residues in contact with GLY1282 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320H ILE* 4.9 3.5 - - - +
324H VAL* 4.3 14.8 - - - +
577H PHE* 3.4 26.2 - - - +
1278H ALA 3.0 12.6 + - - -
1279H GLY 3.3 0.6 + - - -
1281H VAL* 1.3 77.9 - - - +
1283H LEU* 1.3 56.2 + - - +
1285H LEU* 3.3 5.8 + - - +
1286H THR* 2.8 32.3 + - - -
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Residues in contact with LEU1283 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
577H PHE* 3.3 30.7 - - + -
580H LEU* 4.7 8.3 - - + -
1031H ASP* 3.3 46.4 - - + +
1032H TYR* 4.4 3.8 - - - +
1035H ALA* 3.7 15.7 - - + -
1156H VAL* 4.4 19.5 - - + -
1160H VAL* 5.4 0.4 - - + -
1279H GLY 3.0 17.4 + - - +
1280H LEU* 3.8 11.7 - - + +
1282H GLY* 1.3 75.5 - - - +
1284H GLY* 1.3 62.7 + - - +
1286H THR* 3.3 5.5 + - - -
1287H TYR* 3.0 33.1 + - + +
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Residues in contact with GLY1284 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156H VAL* 5.1 1.8 - - - -
1157H ILE* 3.4 27.5 - - - +
1160H VAL* 4.9 6.4 - - - +
1263H ALA* 5.4 3.8 - - - -
1267H SER* 5.7 2.9 - - - -
1280H LEU 3.0 15.3 + - - -
1281H VAL* 3.2 4.0 + - - -
1283H LEU* 1.3 75.8 - - - +
1285H LEU* 1.3 60.2 + - - +
1287H TYR 3.4 0.2 + - - -
1288H ALA* 2.9 28.9 + - - +
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Residues in contact with LEU1285 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320H ILE* 4.2 24.7 - - + -
323H ILE* 4.0 39.5 - - + -
324H VAL* 5.4 0.7 - - + -
362H LEU* 5.6 6.1 - - + -
1260H VAL* 4.3 10.9 - - + +
1263H ALA* 4.5 5.4 - - + -
1264H ALA* 3.8 36.8 - - + +
1267H SER* 5.7 0.7 - - - +
1281H VAL* 2.9 29.5 + - + +
1282H GLY* 3.9 6.5 - - - +
1283H LEU 3.2 0.2 - - - -
1284H GLY* 1.3 74.6 - - - +
1286H THR* 1.3 61.8 + - - +
1288H ALA* 3.5 5.9 - - + +
1289H LEU* 2.9 33.5 + - - +
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Residues in contact with THR1286 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320H ILE* 4.6 2.7 - - - +
577H PHE* 4.0 12.6 + - - +
580H LEU* 3.7 25.7 - - + +
581H SER* 3.0 27.9 + - - +
584H HIS* 3.8 19.5 - - + +
1282H GLY 2.8 22.9 + - - -
1283H LEU* 3.3 8.2 + - - -
1285H LEU* 1.3 75.5 - - - +
1287H TYR* 1.3 71.4 + - + +
1289H LEU* 3.1 8.4 + - - +
1290H MET* 3.1 24.7 + - + +
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Residues in contact with TYR1287 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
580H LEU* 5.8 2.9 - - + -
584H HIS* 5.0 12.3 - + - -
1027H LEU* 4.4 8.8 + - - +
1028H VAL* 4.6 6.5 - - - -
1031H ASP* 3.7 26.1 - - + +
1149H LEU* 6.5 0.9 - - + -
1152H SER* 4.4 9.2 - - - -
1153H ALA* 3.7 28.8 - - + +
1156H VAL* 3.6 46.4 - - + -
1157H ILE* 4.0 9.0 - - + -
1283H LEU* 3.0 18.8 + - + +
1284H GLY 4.1 2.9 - - - +
1286H THR* 1.3 87.5 - - + +
1288H ALA* 1.3 59.4 + - - +
1290H MET* 3.1 12.4 + - + +
1291H VAL* 3.0 31.0 + - - +
1294H TYR* 5.8 3.8 - + - -
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Residues in contact with ALA1288 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157H ILE* 3.6 13.6 - - + +
1256H GLY 4.2 0.9 - - - +
1259H VAL* 4.6 4.3 - - + +
1260H VAL* 3.3 41.6 - - + +
1263H ALA* 4.6 4.7 - - + -
1284H GLY 2.9 18.1 + - - +
1285H LEU* 3.5 12.3 - - + +
1286H THR 3.2 0.2 - - - -
1287H TYR* 1.3 78.5 - - - +
1289H LEU* 1.3 60.6 + - - +
1291H VAL* 3.3 20.9 - - - +
1292H SER* 4.4 2.1 + - - -
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Residues in contact with LEU1289 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316H GLY* 5.0 4.5 - - - -
317H PRO* 4.9 9.9 - - + -
320H ILE* 3.6 27.4 - - + -
362H LEU* 5.0 14.4 - - + -
366H LEU* 4.1 34.8 - - + -
370H ARG* 4.2 9.7 + - - +
581H SER* 3.8 22.0 - - - +
585H ILE* 6.0 3.6 - - + -
1260H VAL* 4.6 3.1 - - + -
1285H LEU 2.9 17.1 + - - +
1286H THR 3.3 6.3 - - - +
1288H ALA* 1.3 79.2 - - - +
1290H MET* 1.3 68.4 + - + +
1291H VAL 3.3 0.7 + - - -
1292H SER* 3.6 15.3 + - - -
1293H ASN* 4.6 2.9 + - - -
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Residues in contact with MET1290 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584H HIS* 3.4 60.3 - - + +
1286H THR 3.1 17.7 + - - +
1287H TYR* 3.1 15.1 + - + +
1289H LEU* 1.3 82.4 - - - +
1291H VAL* 1.3 61.7 + - - +
1292H SER 3.2 0.5 + - - -
1293H ASN* 3.3 19.0 + - + +
1294H TYR* 3.1 62.1 + - + +
1297H TRP* 6.2 3.1 - - + -
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Residues in contact with VAL1291 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1150H CYS* 3.8 28.3 - - - -
1153H ALA* 4.8 9.0 - - + -
1154H LEU* 4.9 11.7 - - + -
1157H ILE* 5.8 2.7 - - + -
1256H GLY* 4.3 7.6 - - - -
1259H VAL* 3.8 25.8 - - + -
1287H TYR 3.0 13.0 + - - +
1288H ALA* 3.3 20.4 - - - +
1290H MET* 1.3 77.2 - - - +
1292H SER* 1.3 57.7 + - - +
1294H TYR* 3.6 7.9 - - + -
1295H LEU* 3.0 40.7 + - + +
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Residues in contact with SER1292 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366H LEU* 5.9 1.9 - - - +
370H ARG* 3.7 25.0 + - - +
1252H MET 4.6 5.8 - - - +
1253H GLU* 3.7 20.9 + - - +
1256H GLY* 3.3 31.3 + - - -
1257H ALA* 4.1 1.0 + - - -
1260H VAL* 5.4 1.0 - - - +
1288H ALA 4.4 2.8 + - - -
1289H LEU* 3.6 6.2 + - - -
1290H MET 3.2 1.0 - - - -
1291H VAL* 1.3 81.2 - - - +
1293H ASN* 1.3 62.0 + - - +
1295H LEU* 4.1 2.6 - - - +
1296H ASN* 3.5 24.4 + - - -
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Residues in contact with ASN1293 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370H ARG* 4.2 15.8 + - - +
588H THR* 5.7 2.8 + - - -
1253H GLU* 3.9 14.7 - - - +
1289H LEU 4.8 4.2 + - - -
1290H MET* 3.3 21.5 + - + +
1292H SER* 1.3 75.9 - - - +
1294H TYR* 1.3 71.1 + - + +
1296H ASN* 3.4 5.8 + - - +
1297H TRP* 3.0 52.3 + - + +
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Residues in contact with TYR1294 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584H HIS* 5.0 5.4 + - - -
1146H SER* 4.5 5.4 - - - +
1149H LEU* 3.5 71.5 - - + +
1150H CYS* 3.9 18.2 - - + -
1153H ALA* 4.6 6.5 - - + -
1287H TYR* 5.8 3.7 - + - -
1290H MET* 3.1 57.4 + - + +
1291H VAL* 3.2 12.8 + - - +
1293H ASN* 1.3 80.7 - - + +
1295H LEU* 1.3 62.3 + - - +
1297H TRP* 3.4 24.5 + + - +
1298H MET* 3.0 31.7 + - - +
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Residues in contact with LEU1295 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1150H CYS* 4.5 10.1 - - - -
1175H CYS* 4.5 27.1 - - + -
1252H MET* 3.8 31.6 - - + +
1255H ILE* 5.0 4.7 - - + -
1256H GLY* 4.9 8.3 - - - +
1291H VAL* 3.0 30.4 + - + +
1292H SER 4.1 3.6 - - - +
1294H TYR* 1.3 72.3 - - - +
1296H ASN* 1.3 67.9 + - - +
1298H MET* 3.4 20.7 + - + +
1299H VAL* 3.0 34.7 + - + +
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Residues in contact with ASN1296 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1248H LEU* 4.6 5.3 - - - +
1249H GLU* 3.2 48.9 + - + +
1252H MET* 3.2 13.9 - - - +
1253H GLU* 3.2 28.7 + - - +
1292H SER 3.5 11.6 + - - -
1293H ASN* 3.4 10.1 + - - +
1294H TYR 3.3 0.6 - - - -
1295H LEU* 1.3 80.8 - - - +
1297H TRP* 1.3 69.5 + - + +
1299H VAL* 3.8 3.3 - - - +
1300H ARG* 2.9 31.6 + - - +
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Residues in contact with TRP1297 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
588H THR* 4.9 14.8 - - + -
1145H ARG* 5.2 13.2 - - - -
1146H SER* 3.4 26.0 - - - +
1149H LEU* 5.5 3.8 - - + -
1290H MET* 6.2 3.1 - - + -
1293H ASN* 3.0 35.7 + - + +
1294H TYR* 3.8 24.7 - + - +
1296H ASN* 1.3 86.1 - - + +
1298H MET* 1.3 63.1 + - - +
1300H ARG* 4.0 24.7 - - - +
1301H ASN* 2.8 39.4 + - - +
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Residues in contact with MET1298 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1143H LEU* 3.4 13.2 - - + +
1146H SER* 3.7 23.6 - - - +
1147H THR* 3.6 33.2 - - - +
1150H CYS* 3.7 24.5 - - + -
1294H TYR 3.0 23.0 + - - +
1295H LEU* 3.7 26.9 - - + +
1297H TRP* 1.3 77.2 - - - +
1299H VAL* 1.3 60.0 + - + +
1302H LEU* 2.8 31.1 + - - +
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Residues in contact with VAL1299 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1175H CYS 5.9 0.7 - - - +
1178H ILE* 6.1 0.4 - - + -
1179H GLN* 4.8 29.4 - - + +
1182H PHE* 3.6 16.2 - - + -
1183H ARG* 5.4 2.2 - - + +
1248H LEU* 3.4 40.4 - - + -
1252H MET* 5.9 1.3 - - + -
1295H LEU* 3.0 27.6 + - + +
1296H ASN* 4.0 2.2 - - - +
1298H MET* 1.3 76.2 - - + +
1300H ARG* 1.3 64.9 + - - +
1302H LEU* 3.0 8.3 + - + +
1303H ALA* 2.9 22.9 + - - +
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Residues in contact with ARG1300 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1182H PHE* 4.7 16.4 - - + -
1245H ASN* 5.5 7.0 - - + +
1246H ARG* 5.7 1.6 - - - +
1248H LEU* 4.8 5.3 - - + +
1296H ASN* 2.9 18.1 + - - +
1297H TRP* 4.0 24.4 - - - +
1299H VAL* 1.3 77.9 - - - +
1301H ASN* 1.3 78.1 + - - +
1303H ALA* 3.4 2.1 + - - +
1304H ASP* 3.0 24.3 + - - +
2001H GBM 4.5 44.2 + - - -
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Residues in contact with ASN1301 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1139H THR* 3.9 11.9 - - + +
1142H CYS* 3.2 34.9 + - - +
1143H LEU* 3.7 29.4 - - + +
1146H SER* 4.6 0.4 + - - -
1297H TRP* 2.8 34.9 + - - +
1300H ARG* 1.3 93.3 + - - +
1302H LEU* 1.3 56.3 + - - +
1304H ASP* 3.8 5.9 - - - +
1305H MET* 2.9 35.0 + - - +
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Residues in contact with LEU1302 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1143H LEU* 3.9 19.5 - - + +
1179H GLN* 3.4 32.3 - - + +
1183H ARG* 3.7 24.7 - - + +
1298H MET 2.8 19.2 + - - +
1299H VAL* 3.0 7.8 + - - +
1301H ASN* 1.3 76.9 - - - +
1303H ALA* 1.3 57.1 + - - +
1305H MET* 3.4 3.2 + - + +
1306H GLU* 2.9 31.6 + - + +
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Residues in contact with ALA1303 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1182H PHE* 3.6 34.3 - - + -
1183H ARG* 4.3 16.3 - - + +
1186H SER* 4.0 15.3 - - - +
1187H ARG* 4.7 1.9 - - + +
1299H VAL 2.9 8.5 + - - +
1300H ARG* 3.9 2.5 - - - +
1302H LEU* 1.3 76.6 - - - +
1304H ASP* 1.3 62.1 + - - +
1306H GLU* 3.3 8.2 + - - +
1307H ILE* 3.0 29.2 + - + +
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Residues in contact with ASP1304 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1135H HIS* 5.8 0.2 - - - +
1139H THR* 3.7 11.0 + - + +
1300H ARG 3.0 17.4 + - - +
1301H ASN* 3.8 8.1 - - - +
1303H ALA* 1.3 77.0 - - - +
1305H MET* 1.3 78.0 + - - +
1307H ILE* 3.3 10.4 + - - +
1308H GLN* 2.8 48.7 + - - +
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Residues in contact with MET1305 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1136H ILE* 3.7 26.2 - - + +
1139H THR* 3.7 26.5 - - + -
1140H LEU* 3.8 37.9 - - + +
1143H LEU* 4.5 9.9 - - + -
1301H ASN 2.9 20.0 + - - +
1302H LEU* 4.0 4.0 - - + +
1304H ASP* 1.3 89.8 - - - +
1306H GLU* 1.3 61.3 + - - +
1308H GLN* 3.3 28.5 - - + +
1309H LEU* 2.9 46.5 + - + +
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Residues in contact with GLU1306 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1183H ARG* 3.2 51.6 + - - +
1187H ARG* 3.1 44.7 + - - +
1302H LEU* 2.9 19.2 + - + +
1303H ALA* 3.3 6.1 + - - +
1305H MET* 1.3 76.1 - - - +
1307H ILE* 1.3 62.7 + - - +
1309H LEU* 4.2 6.5 + - - +
1310H GLY* 4.3 4.7 + - - -
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Residues in contact with ILE1307 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1186H SER* 4.2 5.6 - - - +
1187H ARG* 3.7 34.8 - - + +
1190H GLN* 3.7 38.1 - - + -
1191H GLN* 5.2 10.3 - - + +
1194H ASP* 6.0 0.7 - - - +
1303H ALA 3.0 17.1 + - - +
1304H ASP* 3.5 12.6 - - - +
1306H GLU* 1.3 76.6 - - - +
1308H GLN* 1.3 68.3 + - + +
1310H GLY* 2.9 22.9 + - - -
1311H ALA 4.3 0.7 + - - -
1314H ARG* 5.8 0.3 + - - -
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Residues in contact with GLN1308 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1131H THR* 3.6 22.5 - - + +
1135H HIS* 3.4 31.6 - - - +
1136H ILE* 3.4 18.1 - - + +
1304H ASP* 2.8 43.2 + - - +
1305H MET* 3.2 25.1 + - + +
1307H ILE* 1.3 81.2 - - + +
1309H LEU* 1.3 62.9 + - - +
1310H GLY 3.2 0.8 + - - -
1311H ALA* 3.7 16.9 - - - +
1312H VAL* 4.1 0.2 - - - +
----------------------------------------------------------
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Residues in contact with LEU1309 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1001H CYS* 3.9 30.7 - - + -
1004H TYR* 5.4 8.3 - - + -
1136H ILE* 4.1 19.1 - - + -
1140H LEU* 5.4 10.1 - - + -
1305H MET* 2.9 32.5 + - + +
1306H GLU* 4.8 4.5 - - - +
1307H ILE 3.1 0.4 + - - -
1308H GLN* 1.3 76.4 - - - +
1310H GLY* 1.3 59.8 + - - +
1311H ALA 3.1 2.0 - - - -
1312H VAL* 3.1 26.0 + - + +
1313H LYS* 2.9 26.0 + - - +
----------------------------------------------------------
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Residues in contact with GLY1310 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1306H GLU 4.3 4.1 + - - -
1307H ILE 2.9 13.4 + - - -
1309H LEU* 1.3 76.4 - - - +
1311H ALA* 1.3 59.4 + - - +
1313H LYS* 3.3 13.1 + - - +
1314H ARG* 2.9 43.3 + - - +
----------------------------------------------------------
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Residues in contact with ALA1311 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1128H ASP* 3.3 34.7 - - + +
1131H THR* 4.2 15.0 - - + +
1132H ILE* 4.9 0.4 - - + -
1307H ILE 4.3 1.2 + - - -
1308H GLN* 3.7 15.4 + - - +
1309H LEU 3.1 0.4 - - - -
1310H GLY* 1.3 76.0 - - - +
1312H VAL* 1.3 57.7 + - + +
1314H ARG* 3.1 22.5 + - - +
1315H ILE* 2.9 31.8 + - - +
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Residues in contact with VAL1312 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003H LYS* 5.6 4.7 - - + -
1004H TYR* 4.6 25.6 - - + +
1132H ILE* 3.7 31.4 - - + -
1136H ILE* 3.8 18.2 - - + -
1308H GLN 4.1 0.4 - - - +
1309H LEU* 3.1 21.7 + - + +
1311H ALA* 1.3 75.1 - - - +
1313H LYS* 1.3 58.0 + - - +
1315H ILE* 3.3 9.3 + - + +
1316H HIS* 2.9 27.6 + - + +
----------------------------------------------------------
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Residues in contact with LYS1313 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1000H ALA 5.2 15.4 - - - +
1309H LEU 2.9 13.4 + - - +
1310H GLY* 3.5 14.1 - - - +
1312H VAL* 1.3 77.3 - - - +
1314H ARG* 1.3 58.1 + - + +
1316H HIS* 3.1 9.5 + - + +
1317H ALA* 2.9 25.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG1314 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1124H ARG* 3.5 36.0 + - - +
1127H SER* 4.2 6.9 + - - -
1128H ASP* 2.4 40.4 + - - +
1131H THR* 5.6 0.4 + - - -
1307H ILE 5.8 0.4 + - - -
1310H GLY* 2.9 28.7 + - - +
1311H ALA* 3.1 18.9 + - - +
1313H LYS* 1.3 73.3 - - + +
1315H ILE* 1.3 65.6 + - - +
1317H ALA* 3.3 21.5 + - - +
----------------------------------------------------------
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Residues in contact with ILE1315 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1097H LEU* 4.5 21.3 - - + +
1101H LEU* 4.4 24.8 - - + +
1124H ARG* 4.2 14.4 - - + +
1125H PHE* 5.2 2.2 - - - +
1128H ASP* 3.6 29.2 - - + +
1129H CYS* 5.2 2.5 - - + +
1132H ILE* 4.2 13.2 - - + -
1311H ALA 2.9 19.4 + - - +
1312H VAL* 3.6 11.0 - - + +
1314H ARG* 1.3 76.7 - - - +
1316H HIS* 1.3 61.9 + - - +
1317H ALA 3.3 7.1 + - - +
1318H LEU* 3.8 11.3 - - - +
----------------------------------------------------------
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Residues in contact with HIS1316 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003H LYS* 3.8 29.9 - - + +
1312H VAL* 2.9 17.3 + - + +
1313H LYS* 3.1 11.1 + - + +
1315H ILE* 1.3 74.4 - - - +
1317H ALA* 1.3 60.6 + - - +
1318H LEU* 3.0 25.8 + - + +
----------------------------------------------------------
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Residues in contact with ALA1317 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1124H ARG* 3.6 18.2 + - - +
1313H LYS 2.9 11.9 + - - +
1314H ARG* 3.3 22.5 - - - +
1315H ILE 3.2 5.5 - - - +
1316H HIS* 1.3 75.1 - - - +
1318H LEU* 1.3 62.0 + - - +
1319H LEU* 5.8 0.3 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il