Contacts of the helix formed by residues 286 - 327 (chain G) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 286 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270G PHE* 5.9 2.5 - - + -
284G ALA 3.8 3.1 - - - +
285G ARG* 1.3 78.4 - - - +
287G ILE* 1.3 73.4 + - + +
288G TRP 3.3 0.9 - - - +
289G ARG* 3.2 5.0 + - - +
290G ALA* 3.0 22.6 + - - +
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Residues in contact with ILE 287 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270G PHE* 3.5 35.2 - - + -
284G ALA 5.0 2.9 - - - +
286G ALA* 1.3 82.7 - - + +
288G TRP* 1.3 64.7 + - - +
290G ALA* 3.2 7.4 + - - +
291G LEU* 3.0 42.1 + - + +
607G VAL* 4.8 13.9 - - + -
610G LEU* 4.7 27.1 - - + +
611G SER* 4.4 27.4 - - - +
614G LEU* 4.8 9.6 - - + -
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Residues in contact with TRP 288 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284G ALA* 3.4 48.0 - - + +
285G ARG* 5.4 1.8 - - - -
286G ALA 3.3 1.2 - - - +
287G ILE* 1.3 78.6 - - - +
289G ARG* 1.3 63.9 + - + +
291G LEU* 3.2 19.2 + - + +
292G CYS* 3.0 29.0 + - - -
603G ALA 5.3 1.0 + - - -
604G LEU* 4.0 26.0 - - + -
607G VAL* 3.4 42.4 - - + +
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Residues in contact with ARG 289 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284G ALA 4.8 8.4 + - - +
285G ARG* 3.2 43.3 - - - +
286G ALA 3.2 6.1 + - - +
288G TRP* 1.3 76.4 - - + +
290G ALA* 1.3 58.3 + - - +
292G CYS* 3.3 6.3 + - - +
293G HIS* 2.8 30.9 + - - +
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Residues in contact with ALA 290 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266G LEU* 6.2 0.7 - - + -
269G ALA* 3.0 47.0 - - + +
270G PHE* 4.0 19.3 - - + +
286G ALA 3.0 12.7 + - - +
287G ILE* 3.2 10.1 + - - +
289G ARG* 1.3 76.8 - - - +
291G LEU* 1.3 57.2 + - + +
293G HIS* 4.4 2.7 - - - -
294G ALA* 2.8 26.2 + - - +
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Residues in contact with LEU 291 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266G LEU* 4.6 14.6 - - + -
270G PHE* 6.2 2.5 - - + -
287G ILE* 3.0 41.7 + - + +
288G TRP* 3.2 21.1 + - + +
290G ALA* 1.3 76.2 - - + +
292G CYS* 1.3 59.8 + - - +
294G ALA* 3.2 6.1 + - - +
295G PHE* 2.8 34.3 + - + +
387G LEU* 3.4 33.2 - - + -
391G ILE* 4.3 13.2 - - + -
428G LEU* 6.2 3.8 - - + -
432G PHE* 5.5 13.9 - - + -
607G VAL* 5.9 0.9 - - + -
610G LEU* 6.3 0.7 - - + -
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Residues in contact with CYS 292 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288G TRP* 3.0 21.9 + - - +
289G ARG* 3.7 5.8 - - - +
291G LEU* 1.3 78.3 - - - +
293G HIS* 1.3 59.8 - - - +
294G ALA 2.9 0.2 + - - -
295G PHE 4.9 0.2 - - - -
296G GLY* 2.5 39.0 + - - +
432G PHE* 5.9 7.4 - - - -
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Residues in contact with HIS 293 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
268G VAL* 5.1 8.7 - - + +
269G ALA* 4.2 21.8 - - + +
272G ALA* 4.4 16.4 - - + +
289G ARG 2.8 21.9 + - - +
290G ALA* 3.7 5.8 - - - +
292G CYS* 1.3 72.0 - - - +
294G ALA* 1.3 59.8 + - - +
296G GLY 4.6 0.4 + - - -
297G ARG* 5.5 5.9 - - - +
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Residues in contact with ALA 294 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265G ARG* 3.1 41.2 + - + +
266G LEU* 4.5 6.5 - - + -
269G ALA* 3.9 14.1 - - + -
290G ALA 2.8 18.4 + - - +
291G LEU* 3.6 5.2 - - - +
292G CYS 3.0 0.2 - - - -
293G HIS* 1.3 80.2 - - - +
295G PHE* 1.3 75.7 + - + +
296G GLY 3.8 0.2 - - - -
297G ARG* 5.5 1.1 - - - -
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Residues in contact with PHE 295 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
262G ASN* 4.5 12.3 - - + -
265G ARG* 3.7 28.7 - - + -
266G LEU* 5.2 6.7 - - + -
291G LEU* 2.8 22.3 + - + +
292G CYS* 4.9 0.4 - - - -
294G ALA* 1.3 88.0 - - + +
296G GLY* 1.3 65.6 + - - +
297G ARG* 3.2 3.4 - - - -
298G ARG* 3.2 14.8 + - + +
299G LEU* 3.0 23.5 + - - +
383G THR* 4.0 26.2 - - + +
386G ASN* 3.8 23.3 - - + -
387G LEU* 3.4 50.0 - - + -
390G ALA* 5.0 0.9 - - + -
432G PHE* 5.0 4.5 - - + -
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Residues in contact with GLY 296 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292G CYS* 2.5 32.0 + - - +
293G HIS 4.6 0.2 - - - -
294G ALA 3.8 0.2 - - - -
295G PHE* 1.3 72.0 - - - +
297G ARG* 1.3 64.7 + - - +
299G LEU* 3.2 14.9 + - - +
300G ILE* 3.3 18.3 + - - +
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Residues in contact with ARG 297 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292G CYS 4.6 0.2 + - - -
293G HIS 5.5 5.8 - - - +
294G ALA 5.5 0.9 - - - -
295G PHE* 3.2 0.8 - - - -
296G GLY* 1.3 78.3 - - - +
298G ARG* 1.3 63.6 + - - +
300G ILE* 3.4 18.4 - - - +
301G LEU* 4.1 5.2 + - - +
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Residues in contact with ARG 298 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295G PHE* 3.2 19.2 + - + +
297G ARG* 1.3 82.5 - - - +
299G LEU* 1.3 61.1 + - - +
300G ILE 3.7 0.2 + - - -
301G LEU* 3.7 21.6 + - - +
378G TYR* 5.7 3.0 - - - -
379G VAL* 3.2 40.6 - - + +
382G GLU* 2.9 32.2 + - + +
383G THR* 3.7 19.5 - - - +
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Residues in contact with LEU 299 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295G PHE 3.0 17.0 + - - +
296G GLY* 3.2 8.0 + - - +
298G ARG* 1.3 73.6 - - - +
300G ILE* 1.3 59.1 + - - +
301G LEU 3.1 2.2 - - - -
302G SER* 2.3 46.5 + - - +
303G SER* 3.2 8.9 + - - +
379G VAL* 4.8 0.4 - - - -
380G ALA* 5.1 6.1 - - - -
383G THR* 4.4 14.3 + - + +
432G PHE* 3.9 27.8 - - + +
435G CYS* 3.6 28.0 - - - -
436G PRO* 4.2 18.6 - - + -
439G TRP* 5.2 3.8 - - + -
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Residues in contact with ILE 300 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
296G GLY 3.3 10.2 + - - +
297G ARG* 3.4 22.0 - - - +
299G LEU* 1.3 73.8 - - - +
301G LEU* 1.3 58.0 + - + +
303G SER* 3.3 16.4 + - - +
304G THR* 2.7 44.0 + - - +
439G TRP* 4.7 13.5 - - + +
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Residues in contact with LEU 301 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
297G ARG 4.6 5.2 - - - +
298G ARG* 3.7 26.2 + - - +
299G LEU 3.1 0.4 - - - -
300G ILE* 1.3 80.8 - - + +
302G SER* 1.3 58.8 + - - +
304G THR* 3.2 7.6 + - + -
305G PHE* 2.9 73.9 + - + -
379G VAL* 4.7 12.3 - - + -
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Residues in contact with SER 302 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298G ARG 4.1 1.2 + - - -
299G LEU* 2.3 41.2 + - - +
301G LEU* 1.3 75.7 - - - +
303G SER* 1.3 66.6 + - - +
305G PHE* 3.4 2.4 + - - -
306G ARG* 2.9 19.9 + - - +
376G SER* 3.2 42.6 - - - +
379G VAL* 3.7 20.7 - - - +
380G ALA 4.3 2.7 - - - -
436G PRO* 4.0 8.9 - - - +
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Residues in contact with SER 303 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299G LEU* 3.2 12.6 + - - +
300G ILE* 3.4 23.8 - - - -
301G LEU 3.2 0.2 - - - -
302G SER* 1.3 84.4 + - - +
304G THR* 1.3 56.8 + - - +
306G ARG* 3.0 8.6 + - - +
307G ILE* 2.9 36.7 + - - +
436G PRO* 4.1 14.8 - - - +
439G TRP* 3.4 33.6 - - - -
440G THR* 4.5 2.1 + - - -
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Residues in contact with THR 304 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
300G ILE* 2.7 28.5 + - - +
301G LEU* 3.2 10.8 + - + -
303G SER* 1.3 77.0 - - - +
305G PHE* 1.3 67.6 + - + +
307G ILE* 3.2 13.5 + - + +
308G LEU* 3.0 39.5 + - + +
----------------------------------------------------------
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Residues in contact with PHE 305 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
301G LEU* 2.9 59.8 + - + +
302G SER* 3.7 4.7 - - - +
304G THR* 1.3 81.0 - - + +
306G ARG* 1.3 58.0 + - - +
308G LEU* 3.4 10.7 + - + +
309G ALA* 2.9 23.2 + - - +
372G PHE* 3.4 51.5 - + + +
375G ALA* 3.2 33.9 - - + -
376G SER 4.1 2.0 - - - +
379G VAL* 5.2 2.9 - - + -
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Residues in contact with ARG 306 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302G SER 2.9 13.3 + - - +
303G SER 3.0 9.4 + - - +
305G PHE* 1.3 77.4 - - - +
307G ILE* 1.3 56.9 + - - +
309G ALA* 3.1 7.1 + - - +
310G ASP* 2.9 36.6 + - - +
373G LEU* 3.9 18.1 - - + +
376G SER* 3.5 27.0 + - - -
377G TYR* 4.0 20.0 - - - +
380G ALA* 5.5 0.4 - - - +
433G PHE 4.4 7.7 + - - -
436G PRO* 3.3 29.6 - - - +
437G ASN* 3.2 21.6 + - - -
440G THR* 3.4 29.2 - - + +
444G GLN* 5.0 1.5 - - - +
2001G GBM 2.9 35.1 - - - +
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Residues in contact with ILE 307 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
303G SER* 2.9 25.0 + - - +
304G THR* 3.2 11.6 + - + +
306G ARG* 1.3 74.6 - - - +
308G LEU* 1.3 66.5 + - + +
310G ASP* 3.1 13.4 + - - +
311G LEU* 3.1 34.0 + - + +
439G TRP* 5.0 16.2 - - + +
440G THR* 3.9 15.9 - - - +
443G VAL* 5.5 15.3 - - + -
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Residues in contact with LEU 308 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304G THR* 3.0 32.3 + - + +
305G PHE* 3.8 7.6 - - + +
307G ILE* 1.3 79.3 - - + +
309G ALA* 1.3 58.3 + - - +
311G LEU* 3.3 21.9 + - + +
312G LEU* 3.0 34.5 + - + +
372G PHE* 3.3 39.5 - - + -
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Residues in contact with ALA 309 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
305G PHE 2.9 14.5 + - - +
306G ARG 3.1 9.8 + - - +
308G LEU* 1.3 77.9 - - - +
310G ASP* 1.3 56.9 + - - +
313G GLY 2.9 23.4 + - - -
369G GLN* 3.3 41.0 + - + +
372G PHE* 3.9 7.5 - - + +
373G LEU* 3.9 23.8 - - + +
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Residues in contact with ASP 310 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306G ARG* 2.9 18.1 + - - +
307G ILE* 3.1 14.9 + - - +
309G ALA* 1.3 76.4 - - - +
311G LEU* 1.3 65.7 + - + +
313G GLY* 3.2 2.5 + - - -
314G PHE* 3.0 36.3 + - + -
369G GLN* 5.6 0.2 - - - +
373G LEU* 5.7 1.0 - - - +
440G THR* 3.2 19.6 + - - +
443G VAL* 4.5 13.2 - - + +
444G GLN* 2.3 46.4 + - + +
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Residues in contact with LEU 311 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
307G ILE* 3.1 23.2 + - + +
308G LEU* 3.7 24.0 - - + +
310G ASP* 1.3 78.2 - - + +
312G LEU* 1.3 62.4 + - + +
314G PHE* 3.2 15.9 + - + +
315G ALA* 3.0 25.1 + - - +
443G VAL* 5.8 6.5 - - + -
447G VAL* 5.6 7.4 - - + -
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Residues in contact with LEU 312 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
308G LEU* 3.0 17.9 + - + +
309G ALA 3.9 0.4 - - - +
311G LEU* 1.3 78.9 - - + +
313G GLY* 1.3 61.7 + - - +
315G ALA* 3.4 19.5 - - + +
316G GLY* 3.9 2.9 + - - -
362G LEU* 6.0 0.2 - - - +
365G ALA* 3.7 29.1 - - + +
366G LEU* 5.3 2.3 - - - +
368G LEU* 3.6 36.6 - - + -
369G GLN* 3.6 29.8 - - + +
372G PHE* 4.1 15.0 - - + -
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Residues in contact with GLY 313 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
309G ALA 2.9 11.9 + - - -
310G ASP* 3.2 4.2 + - - -
312G LEU* 1.3 77.9 - - - +
314G PHE* 1.3 65.1 + - - +
316G GLY* 3.1 13.7 + - - -
317G PRO* 3.6 9.5 - - - +
366G LEU* 5.9 0.7 - - - -
369G GLN* 3.3 27.1 - - - -
585G ILE* 3.7 12.1 - - - +
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Residues in contact with PHE 314 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310G ASP* 3.0 29.5 + - + +
311G LEU* 3.2 12.3 + - + +
313G GLY* 1.3 76.5 - - - +
315G ALA* 1.3 64.2 + - - +
316G GLY 3.1 0.7 + - - -
317G PRO* 3.8 10.8 - - - +
318G LEU* 3.4 21.3 - - + +
443G VAL* 4.5 2.2 - - + -
444G GLN* 3.1 43.3 - - + -
447G VAL* 3.6 35.2 - - + -
448G GLY* 3.9 11.9 - - - -
451G LEU* 4.2 16.7 - - + +
582G LEU* 4.6 11.4 - - + -
585G ILE* 4.2 28.7 - - + -
586G LEU* 4.5 2.5 - - + -
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Residues in contact with ALA 315 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
311G LEU 3.0 12.5 + - - +
312G LEU* 3.4 19.5 - - + +
313G GLY 3.1 0.4 - - - -
314G PHE* 1.3 77.8 - - - +
316G GLY* 1.3 62.4 + - - +
317G PRO 3.8 0.2 - - - -
318G LEU* 3.5 13.6 - - + +
319G CYS* 3.1 29.9 + - - -
362G LEU* 4.6 0.7 - - - -
365G ALA* 4.3 15.0 - - + -
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Residues in contact with GLY 316 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312G LEU 3.9 3.1 + - - -
313G GLY 3.1 12.3 + - - -
315G ALA* 1.3 76.2 - - - +
317G PRO* 1.3 62.9 - - - +
319G CYS* 2.9 21.8 + - - +
320G ILE* 3.0 18.1 + - - +
362G LEU* 3.6 20.2 - - - +
366G LEU* 5.9 2.5 - - - -
1289G LEU* 5.0 9.0 - - - -
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Residues in contact with PRO 317 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313G GLY 3.6 12.6 - - - +
314G PHE 3.8 6.7 - - - +
316G GLY* 1.3 84.3 - - - +
318G LEU* 1.3 60.8 + - + +
319G CYS 3.3 0.2 - - - -
320G ILE* 3.6 11.9 - - + -
321G PHE* 2.8 28.8 + - - +
451G LEU* 6.2 0.7 - - + -
455G ILE* 5.9 0.9 - - + -
578G ALA* 3.5 33.6 - - + +
581G SER* 4.3 7.6 - - - -
582G LEU* 3.7 30.1 - - + +
585G ILE* 4.2 10.8 - - + -
1289G LEU* 5.0 7.2 - - + -
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Residues in contact with LEU 318 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314G PHE* 3.4 20.2 - - + +
315G ALA* 3.5 15.3 - - + +
316G GLY 3.1 0.6 - - - -
317G PRO* 1.3 79.1 - - + +
319G CYS* 1.3 59.0 + - - +
321G PHE* 3.2 13.9 + - + +
322G GLY* 3.0 24.9 + - - -
451G LEU* 4.5 30.5 - - + -
454G TYR* 6.2 4.0 - - + -
455G ILE* 5.8 7.6 - - + -
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Residues in contact with CYS 319 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315G ALA* 3.1 23.8 + - - -
316G GLY 2.9 9.2 + - - +
318G LEU* 1.3 79.1 - - - +
320G ILE* 1.3 57.6 + - - +
322G GLY* 3.4 0.9 + - - +
323G ILE* 2.9 38.1 + - + +
358G LEU* 3.8 28.5 - - + +
361G LEU* 4.9 5.2 - - - -
362G LEU* 3.8 43.1 - - + -
365G ALA* 6.0 0.2 - - - -
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Residues in contact with ILE 320 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316G GLY 3.0 7.5 + - - +
317G PRO* 3.5 17.7 - - + +
319G CYS* 1.3 76.8 - - - +
321G PHE* 1.3 55.4 + - - +
323G ILE* 3.3 5.7 + - - +
324G VAL* 2.9 40.6 + - + +
362G LEU* 5.2 6.7 - - + -
573G PRO 5.6 0.2 - - - +
574G SER 5.5 0.9 - - - +
577G PHE* 4.4 12.3 - - + -
578G ALA* 4.2 19.3 - - + +
581G SER* 3.8 14.4 - - - +
1282G GLY* 4.9 8.1 - - - +
1285G LEU* 4.2 27.6 - - + +
1286G THR* 4.6 0.9 - - - +
1289G LEU* 3.6 31.9 - - + -
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Residues in contact with PHE 321 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317G PRO 2.8 16.8 + - - +
318G LEU* 3.4 13.9 - - + +
320G ILE* 1.3 75.8 - - - +
322G GLY* 1.3 60.8 + - - +
325G ASP* 2.9 43.0 + - + +
454G TYR* 5.6 11.7 - + - -
455G ILE* 5.3 17.7 - - + -
574G SER* 3.2 50.0 - - - +
575G VAL* 4.4 11.9 - - + -
578G ALA* 4.1 5.4 - - + -
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Residues in contact with GLY 322 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318G LEU 3.0 13.7 + - - -
319G CYS 3.9 0.2 - - - -
321G PHE* 1.3 81.2 - - - +
323G ILE* 1.3 57.1 + - - +
325G ASP* 3.3 8.4 - - - +
326G HIS* 3.0 35.5 + - - -
358G LEU* 3.6 18.8 - - - -
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Residues in contact with ILE 323 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319G CYS* 2.9 26.0 + - + +
320G ILE* 3.3 3.8 + - - +
322G GLY* 1.3 76.2 - - - +
324G VAL* 1.3 64.0 + - + +
326G HIS* 3.2 4.9 + - - +
327G LEU* 2.9 39.7 + - + +
354G ASN 5.3 0.9 - - - -
355G ALA* 4.0 11.1 - - - +
358G LEU* 3.8 27.1 - - + -
359G ALA* 4.3 13.5 - - + +
362G LEU* 5.3 4.3 - - + -
1264G ALA* 5.0 2.2 - - + -
1268G ILE* 3.9 28.5 - - + -
1281G VAL* 4.4 1.1 - - + -
1285G LEU* 4.0 30.7 - - + -
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Residues in contact with VAL 324 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320G ILE* 2.9 23.9 + - + +
323G ILE* 1.3 81.9 - - + +
325G ASP* 1.3 65.5 + - - +
327G LEU* 3.8 5.8 - - + +
328G GLY* 3.2 17.7 + - - -
573G PRO* 3.6 20.4 - - + +
574G SER* 3.4 35.3 - - - +
1278G ALA* 3.8 19.7 - - + +
1281G VAL* 5.1 2.7 - - + -
1282G GLY* 4.3 25.6 - - - +
1285G LEU* 5.4 0.7 - - + -
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Residues in contact with ASP 325 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321G PHE* 2.9 34.4 + - + +
322G GLY* 3.3 11.1 - - - +
324G VAL* 1.3 78.3 - - - +
326G HIS* 1.3 69.3 + - + +
328G GLY* 3.1 16.8 + - - -
574G SER* 3.8 8.2 - - - -
----------------------------------------------------------
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Residues in contact with HIS 326 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322G GLY* 3.0 28.5 + - - +
323G ILE* 3.2 3.1 + - - +
325G ASP* 1.3 85.3 + - + +
327G LEU* 1.3 65.3 + - + +
328G GLY 3.2 3.2 + - - -
354G ASN* 3.2 60.4 + - + +
355G ALA* 5.2 6.7 - - + -
358G LEU* 4.9 0.9 - - + -
1272G LEU* 5.8 0.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU 327 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323G ILE* 2.9 22.8 + - + +
324G VAL* 3.8 7.9 - - + +
325G ASP 3.2 0.2 - - - -
326G HIS* 1.3 81.3 - - + +
328G GLY* 1.3 58.3 + - - +
355G ALA* 5.5 3.8 - - + -
1268G ILE* 3.7 42.0 - - + -
1271G SER* 4.0 30.0 - - - +
1272G LEU* 4.1 17.9 - - + +
1278G ALA* 4.4 19.9 + - + +
1281G VAL* 4.0 22.9 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il