Contacts of the helix formed by residues 286 - 327 (chain H) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 286 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270H PHE* 5.9 3.1 - - + -
284H ALA 3.8 3.0 - - - +
285H ARG* 1.3 78.8 - - - +
287H ILE* 1.3 72.1 + - + +
288H TRP 3.3 0.7 - - - -
289H ARG* 3.2 5.2 + - - +
290H ALA* 3.0 22.8 + - - +
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Residues in contact with ILE 287 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270H PHE* 3.5 34.3 - - + -
284H ALA 5.0 3.5 - - - +
286H ALA* 1.3 82.3 - - + +
288H TRP* 1.3 62.9 + - - +
290H ALA* 3.2 6.8 + - - +
291H LEU* 3.0 42.7 + - + +
607H VAL* 4.8 15.7 - - + -
610H LEU* 4.7 26.0 - - + +
611H SER* 4.4 26.7 - - - +
614H LEU* 4.8 10.1 - - + -
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Residues in contact with TRP 288 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284H ALA* 3.4 46.4 - - + +
285H ARG* 5.4 1.8 - - - -
286H ALA 3.3 1.0 - - - +
287H ILE* 1.3 78.6 - - - +
289H ARG* 1.3 66.3 + - + +
291H LEU* 3.2 19.9 + - + +
292H CYS* 3.0 29.0 + - - -
603H ALA 5.3 1.0 + - - -
604H LEU* 4.0 25.8 - - + -
607H VAL* 3.4 42.9 - - + +
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Residues in contact with ARG 289 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284H ALA 4.8 8.0 + - - +
285H ARG* 3.2 44.0 - - - +
286H ALA 3.2 6.2 + - - +
288H TRP* 1.3 77.1 - - + +
290H ALA* 1.3 58.0 + - - +
292H CYS* 3.3 6.0 + - - +
293H HIS* 2.8 32.6 + - - +
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Residues in contact with ALA 290 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266H LEU* 6.2 0.4 - - + -
269H ALA* 3.0 46.4 - - + +
270H PHE* 4.0 21.3 - - + +
286H ALA 3.0 13.2 + - - +
287H ILE* 3.2 9.4 + - - +
289H ARG* 1.3 76.8 - - - +
291H LEU* 1.3 57.3 + - + +
293H HIS* 3.3 3.2 + - - -
294H ALA* 2.8 25.9 + - - +
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Residues in contact with LEU 291 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266H LEU* 4.6 14.4 - - + -
270H PHE* 6.2 2.5 - - + -
287H ILE* 3.0 43.2 + - + +
288H TRP* 3.5 20.9 - - + +
290H ALA* 1.3 76.0 - - + +
292H CYS* 1.3 59.3 + - - +
294H ALA* 3.2 5.8 + - - +
295H PHE* 2.8 35.6 + - + +
387H LEU* 3.4 32.8 - - + -
391H ILE* 4.3 12.6 - - + -
428H LEU* 6.2 4.0 - - + -
432H PHE* 5.5 14.4 - - + -
607H VAL* 5.9 0.7 - - + -
610H LEU* 6.3 0.7 - - + -
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Residues in contact with CYS 292 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288H TRP* 3.0 22.1 + - - +
289H ARG* 3.7 5.8 - - - +
291H LEU* 1.3 78.9 - - - +
293H HIS* 1.3 60.3 + - - +
296H GLY* 2.5 38.7 + - - +
432H PHE* 5.9 7.2 - - - -
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Residues in contact with HIS 293 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
268H VAL* 5.1 8.5 - - + +
269H ALA* 4.2 21.1 - - - +
272H ALA* 4.4 18.3 - - + +
289H ARG 2.8 20.8 + - - +
290H ALA* 3.7 6.5 - - - +
292H CYS* 1.3 71.8 - - - +
294H ALA* 1.3 58.3 + - - +
296H GLY 4.6 0.6 + - - -
297H ARG* 5.5 6.1 - - - +
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Residues in contact with ALA 294 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265H ARG* 3.1 41.1 + - - +
266H LEU* 4.5 6.7 - - + -
269H ALA* 3.9 12.8 - - + -
290H ALA 2.8 18.0 + - - +
291H LEU* 3.6 5.2 - - - +
292H CYS 3.0 0.2 - - - -
293H HIS* 1.3 79.9 - - - +
295H PHE* 1.3 74.7 + - + +
296H GLY 3.8 0.2 - - - -
297H ARG* 5.5 1.3 - - - -
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Residues in contact with PHE 295 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
262H ASN* 4.5 11.2 - - + -
265H ARG* 3.7 28.7 - - - -
266H LEU* 5.2 6.5 - - + -
291H LEU* 2.8 23.2 + - + +
292H CYS* 4.9 0.2 - - - -
294H ALA* 1.3 86.6 - - + +
296H GLY* 1.3 67.1 + - - +
297H ARG* 3.2 2.9 - - - -
298H ARG* 3.2 14.8 + - + +
299H LEU* 3.0 23.2 + - - +
383H THR* 4.0 25.8 - - + -
386H ASN* 3.8 24.0 - - + -
387H LEU* 3.4 49.6 - - + -
390H ALA* 5.0 1.1 - - + -
432H PHE* 5.0 5.2 - - + -
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Residues in contact with GLY 296 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292H CYS* 2.5 31.2 + - - +
293H HIS 4.6 0.4 - - - -
294H ALA 3.8 0.6 - - - -
295H PHE* 1.3 72.4 - - - +
297H ARG* 1.3 64.2 + - - +
299H LEU* 3.2 15.9 + - - +
300H ILE* 3.3 18.5 + - - +
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Residues in contact with ARG 297 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293H HIS 5.5 6.1 - - - +
294H ALA 5.5 0.6 - - - -
295H PHE* 3.2 0.8 - - - +
296H GLY* 1.3 76.9 - - - +
298H ARG* 1.3 64.3 + - - +
300H ILE* 3.4 18.9 - - - +
301H LEU* 4.1 5.5 + - - +
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Residues in contact with ARG 298 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295H PHE* 3.2 19.6 + - + +
297H ARG* 1.3 81.3 - - - +
299H LEU* 1.3 62.2 + - - +
300H ILE 3.7 0.2 + - - -
301H LEU* 3.7 20.8 + - - +
378H TYR* 5.7 2.8 - - - -
379H VAL* 3.2 40.7 - - + +
382H GLU* 2.9 32.5 + - + +
383H THR* 3.7 20.6 - - - +
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Residues in contact with LEU 299 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295H PHE 3.0 17.1 + - - +
296H GLY* 3.2 7.8 + - - +
298H ARG* 1.3 73.8 - - - +
300H ILE* 1.3 59.3 + - - +
301H LEU 3.1 2.9 - - - -
302H SER* 2.3 46.4 + - - +
303H SER* 3.2 10.0 + - - +
379H VAL* 4.8 0.9 - - + -
380H ALA* 5.1 5.8 - - - -
383H THR* 4.4 13.4 + - + +
432H PHE* 3.9 28.3 - - + +
435H CYS* 3.6 28.3 - - - -
436H PRO* 4.2 18.4 - - + -
439H TRP* 5.2 5.4 - - + -
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Residues in contact with ILE 300 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
296H GLY 3.3 11.0 + - - +
297H ARG* 3.4 21.8 - - - +
299H LEU* 1.3 73.1 - - - +
301H LEU* 1.3 59.6 + - + +
303H SER* 3.4 17.9 - - - +
304H THR* 2.7 44.0 + - - +
439H TRP* 4.7 14.4 - - + +
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Residues in contact with LEU 301 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
297H ARG 4.6 4.9 - - - +
298H ARG* 3.7 24.8 + - - +
299H LEU 3.1 0.2 - - - -
300H ILE* 1.3 81.6 - - + +
302H SER* 1.3 60.6 + - - +
304H THR* 3.2 7.5 + - + -
305H PHE* 2.9 74.5 + - + -
379H VAL* 4.7 13.0 - - + -
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Residues in contact with SER 302 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298H ARG 4.1 1.4 + - - -
299H LEU* 2.3 40.8 + - - +
301H LEU* 1.3 75.3 - - - +
303H SER* 1.3 65.1 + - - +
305H PHE* 3.4 3.2 + - - -
306H ARG* 2.9 20.3 + - - +
376H SER* 3.2 41.6 - - - +
379H VAL* 3.7 20.3 - - - +
380H ALA 4.3 2.7 - - - -
436H PRO* 4.0 8.5 - - - +
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Residues in contact with SER 303 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299H LEU* 3.2 12.4 + - - +
300H ILE* 3.4 23.9 - - - -
301H LEU 3.2 0.2 - - - -
302H SER* 1.3 83.1 + - - +
304H THR* 1.3 58.3 + - - +
306H ARG* 3.0 8.5 + - - +
307H ILE* 2.9 34.8 + - - +
436H PRO* 4.1 14.6 - - - +
439H TRP* 3.4 34.5 - - - -
440H THR* 4.5 1.9 + - - -
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Residues in contact with THR 304 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
300H ILE* 2.7 28.5 + - - +
301H LEU* 3.6 10.3 - - + -
303H SER* 1.3 77.1 - - - +
305H PHE* 1.3 68.6 + - + +
307H ILE* 3.2 13.6 + - + +
308H LEU* 3.0 37.9 + - + +
----------------------------------------------------------
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Residues in contact with PHE 305 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
301H LEU* 2.9 61.2 + - + +
302H SER* 3.7 4.7 - - - +
304H THR* 1.3 81.0 - - + +
306H ARG* 1.3 58.0 + - - +
308H LEU* 3.4 10.5 + - + +
309H ALA* 2.9 23.6 + - - +
372H PHE* 3.4 50.4 - + + +
375H ALA* 3.2 34.5 - - + -
376H SER 4.1 2.2 - - - +
379H VAL* 5.2 2.7 - - + -
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Residues in contact with ARG 306 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302H SER 2.9 13.2 + - - +
303H SER* 3.0 9.6 + - - +
305H PHE* 1.3 77.4 - - - +
307H ILE* 1.3 57.0 + - - +
309H ALA* 3.1 7.4 + - - +
310H ASP* 2.9 35.6 + - - +
373H LEU* 3.9 18.3 - - + +
376H SER* 3.5 27.3 + - - -
377H TYR* 4.0 19.0 - - - +
380H ALA* 5.5 0.4 - - - +
433H PHE 4.4 7.7 + - - -
436H PRO* 3.3 29.8 - - - +
437H ASN* 3.2 21.2 + - - -
440H THR* 3.4 28.5 - - + +
444H GLN* 5.0 1.9 - - - +
2001H GBM 2.9 35.4 + - - +
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Residues in contact with ILE 307 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
303H SER* 2.9 23.9 + - - +
304H THR* 3.6 12.3 - - + +
306H ARG* 1.3 75.7 - - - +
308H LEU* 1.3 66.5 + - + +
310H ASP* 3.1 13.6 + - - +
311H LEU* 3.1 33.4 + - + +
439H TRP* 5.0 16.2 - - + +
440H THR* 3.9 16.4 - - - +
443H VAL* 5.5 15.5 - - + -
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Residues in contact with LEU 308 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304H THR* 3.0 32.0 + - + +
305H PHE* 3.8 7.2 - - + +
307H ILE* 1.3 79.5 - - + +
309H ALA* 1.3 58.1 + - - +
311H LEU* 3.3 21.0 + - + +
312H LEU* 3.0 34.7 + - + +
372H PHE* 3.3 39.9 - - + -
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Residues in contact with ALA 309 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
305H PHE 2.9 14.6 + - - +
306H ARG 3.1 8.5 + - - +
308H LEU* 1.3 77.3 - - - +
310H ASP* 1.3 57.8 + - - +
313H GLY 2.9 23.0 + - - -
369H GLN* 3.3 40.9 + - + +
372H PHE* 3.9 8.7 - - + +
373H LEU* 3.9 24.2 - - + +
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Residues in contact with ASP 310 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306H ARG* 2.9 18.0 + - - +
307H ILE* 3.3 15.5 - - - +
309H ALA* 1.3 75.8 - - - +
311H LEU* 1.3 66.0 + - + +
313H GLY* 3.2 2.8 + - - -
314H PHE* 3.0 37.5 + - + -
369H GLN* 5.6 0.2 - - - +
373H LEU* 5.7 0.7 - - - +
440H THR* 3.2 19.9 + - - +
443H VAL* 4.5 13.7 - - + +
444H GLN* 2.3 48.0 + - + +
----------------------------------------------------------
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Residues in contact with LEU 311 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
307H ILE* 3.1 22.3 + - + +
308H LEU* 3.3 25.3 + - + +
310H ASP* 1.3 78.5 - - + +
312H LEU* 1.3 61.2 + - + +
314H PHE* 3.2 15.9 + - + +
315H ALA* 3.0 24.8 + - - +
443H VAL* 5.8 6.1 - - + -
447H VAL* 5.6 7.6 - - + -
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Residues in contact with LEU 312 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
308H LEU* 3.0 18.8 + - + +
309H ALA 3.9 0.2 - - - +
311H LEU* 1.3 79.7 - - + +
313H GLY* 1.3 61.9 + - - +
315H ALA* 3.4 19.4 - - + +
316H GLY* 3.9 2.6 + - - -
362H LEU* 6.0 0.2 - - - +
365H ALA* 3.7 28.9 - - + +
366H LEU* 5.3 2.1 - - - +
368H LEU* 3.6 35.2 - - + -
369H GLN* 3.6 29.7 - - + +
372H PHE* 4.1 14.8 - - + -
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Residues in contact with GLY 313 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
309H ALA 2.9 12.1 + - - -
310H ASP* 3.2 4.9 + - - -
312H LEU* 1.3 77.4 - - - +
314H PHE* 1.3 64.4 + - - +
316H GLY* 3.1 12.5 + - - -
317H PRO* 3.6 9.5 - - - +
366H LEU* 5.9 0.4 - - - -
369H GLN* 3.3 26.0 - - - -
585H ILE* 3.7 12.1 - - - +
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Residues in contact with PHE 314 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310H ASP* 3.0 30.0 + - + +
311H LEU* 3.2 12.1 + - + +
313H GLY* 1.3 75.9 - - - +
315H ALA* 1.3 63.8 + - - +
316H GLY 3.3 0.7 + - - -
317H PRO* 3.8 10.7 - - - +
318H LEU* 3.4 21.7 - - + +
443H VAL* 4.5 1.8 - - + -
444H GLN* 3.1 44.2 - - + -
447H VAL* 3.6 36.3 - - + -
448H GLY* 3.9 11.7 - - - -
451H LEU* 4.2 16.8 - - + +
582H LEU* 4.6 10.8 - - + -
585H ILE* 4.2 28.9 - - + -
586H LEU* 4.5 2.5 - - + -
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Residues in contact with ALA 315 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
311H LEU 3.0 12.0 + - - +
312H LEU* 3.4 20.9 - - + +
313H GLY 3.1 0.8 - - - -
314H PHE* 1.3 77.7 - - - +
316H GLY* 1.3 59.8 + - - +
318H LEU* 3.5 13.6 - - + +
319H CYS* 3.1 31.3 + - - -
362H LEU* 4.6 0.4 - - - -
365H ALA* 4.3 15.3 - - + -
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Residues in contact with GLY 316 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312H LEU 3.9 2.6 + - - -
313H GLY 3.1 12.1 + - - -
315H ALA* 1.3 76.4 - - - +
317H PRO* 1.3 63.0 - - - +
319H CYS* 2.9 21.8 + - - +
320H ILE* 3.0 17.9 + - - +
362H LEU* 3.6 19.3 - - - +
366H LEU* 5.9 2.7 - - - -
1289H LEU* 5.0 9.4 - - - -
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Residues in contact with PRO 317 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313H GLY 3.6 12.3 - - - +
314H PHE 3.8 6.5 - - - +
316H GLY* 1.3 84.8 - - - +
318H LEU* 1.3 61.1 + - + +
320H ILE* 3.6 12.1 - - + -
321H PHE* 2.8 28.6 + - - +
451H LEU* 6.2 0.4 - - + -
455H ILE* 5.7 1.1 - - + +
578H ALA* 3.5 33.8 - - + +
581H SER* 4.3 7.6 - - - -
582H LEU* 3.7 30.3 - - + +
585H ILE* 4.2 10.8 - - + -
1289H LEU* 5.0 7.2 - - + -
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Residues in contact with LEU 318 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314H PHE* 3.4 20.4 - - + +
315H ALA* 3.5 14.4 - - + +
316H GLY 3.1 0.8 - - - -
317H PRO* 1.3 80.2 - - + +
319H CYS* 1.3 58.3 + - - +
321H PHE* 3.2 14.0 + - + +
322H GLY* 3.0 24.6 + - - -
358H LEU* 5.6 0.2 - - - +
451H LEU* 4.5 29.6 - - + -
454H TYR* 6.2 4.0 - - + -
455H ILE* 5.8 7.9 - - + -
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Residues in contact with CYS 319 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315H ALA* 3.1 19.7 + - - -
316H GLY 2.9 8.8 + - - +
318H LEU* 1.3 78.7 - - - +
320H ILE* 1.3 57.7 + - - +
322H GLY* 3.4 0.9 + - - +
323H ILE* 2.9 37.2 + - + +
358H LEU* 3.8 29.8 - - + +
361H LEU* 4.9 4.5 - - - -
362H LEU* 3.8 42.6 - - + -
365H ALA* 6.0 0.4 - - - -
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Residues in contact with ILE 320 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316H GLY 3.0 7.2 + - - +
317H PRO* 3.5 17.5 - - + +
318H LEU 3.2 0.2 - - - -
319H CYS* 1.3 76.0 - - - +
321H PHE* 1.3 56.3 + - - +
323H ILE* 3.3 6.3 + - - +
324H VAL* 2.9 40.4 + - + +
362H LEU* 5.2 7.0 - - + -
573H PRO 5.6 0.2 - - - +
574H SER 5.5 0.9 - - - +
577H PHE* 4.4 12.3 - - + -
578H ALA 4.2 18.8 - - - +
581H SER* 3.8 13.9 - - - +
1282H GLY* 4.9 7.2 - - - +
1285H LEU* 4.2 27.8 - - + +
1286H THR* 4.6 0.9 - - - +
1289H LEU* 3.6 32.1 - - + -
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Residues in contact with PHE 321 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317H PRO 2.8 16.8 + - - +
318H LEU* 3.2 15.5 + - + +
320H ILE* 1.3 77.0 - - - +
322H GLY* 1.3 60.1 + - - +
325H ASP* 2.9 43.6 + - + +
454H TYR* 5.6 12.3 - + - -
455H ILE* 5.3 15.7 - - + -
574H SER* 3.2 49.7 - - - +
575H VAL* 4.4 11.9 - - + -
578H ALA* 4.1 6.0 - - + +
----------------------------------------------------------
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Residues in contact with GLY 322 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318H LEU 3.0 14.1 + - - -
321H PHE* 1.3 82.0 - - - +
323H ILE* 1.3 56.5 + - - +
325H ASP* 3.3 8.9 - - - +
326H HIS* 3.0 35.8 + - - -
358H LEU* 3.6 18.6 - - - -
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Residues in contact with ILE 323 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319H CYS* 2.9 26.6 + - + +
320H ILE* 3.8 3.6 - - - +
322H GLY* 1.3 76.8 - - - +
324H VAL* 1.3 64.1 + - + +
326H HIS* 3.2 5.3 + - - +
327H LEU* 2.9 39.5 + - + +
354H ASN 5.3 0.9 - - - -
355H ALA* 4.0 12.0 - - - +
358H LEU* 3.8 26.5 - - + -
359H ALA* 4.3 12.6 - - + +
362H LEU* 5.3 4.5 - - + -
1264H ALA* 5.0 2.2 - - + -
1268H ILE* 3.9 27.6 - - + -
1281H VAL* 4.4 1.3 - - + -
1285H LEU* 4.0 30.1 - - + -
----------------------------------------------------------
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Residues in contact with VAL 324 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320H ILE* 2.9 23.7 + - + +
323H ILE* 1.3 82.5 - - + +
325H ASP* 1.3 64.5 + - - +
327H LEU* 3.8 4.7 - - - +
328H GLY* 3.2 17.3 + - - -
573H PRO* 3.6 20.2 - - + +
574H SER* 3.4 34.6 - - - +
1278H ALA* 3.8 20.4 - - + +
1281H VAL* 5.1 2.5 - - + -
1282H GLY* 4.3 26.0 - - - +
1285H LEU* 5.4 0.4 - - + -
----------------------------------------------------------
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Residues in contact with ASP 325 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321H PHE* 2.9 35.1 + - + +
322H GLY* 3.3 10.2 - - - +
324H VAL* 1.3 77.5 - - - +
326H HIS* 1.3 70.0 + - + +
328H GLY* 3.1 17.0 + - - -
574H SER* 3.8 8.2 - - - -
----------------------------------------------------------
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Residues in contact with HIS 326 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322H GLY* 3.0 28.8 + - - +
323H ILE* 4.0 2.9 - - - +
325H ASP* 1.3 83.5 + - + +
327H LEU* 1.3 65.5 + - - +
328H GLY 3.2 3.0 + - - -
354H ASN* 3.1 59.4 + - + +
355H ALA* 5.2 7.0 - - + -
358H LEU* 4.9 0.9 - - + -
1272H LEU* 5.8 1.0 - - - +
----------------------------------------------------------
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Residues in contact with LEU 327 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323H ILE* 2.9 21.3 + - + +
324H VAL* 3.6 7.8 + - - +
325H ASP 3.2 0.4 - - - -
326H HIS* 1.3 81.4 - - + +
328H GLY* 1.3 58.4 + - - +
355H ALA* 5.5 3.4 - - + -
1268H ILE* 3.7 41.5 - - + -
1271H SER* 4.0 31.0 - - - +
1272H LEU* 4.1 17.7 - - + +
1277H SER 5.6 0.4 - - - -
1278H ALA* 4.4 20.2 + - + +
1281H VAL* 4.0 23.8 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il