Contacts of the helix formed by residues 355 - 401 (chain E) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 355 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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323E ILE* 4.0 5.5 - - + +
326E HIS* 5.2 9.4 - - + -
327E LEU* 5.5 4.9 - - + -
354E ASN* 1.3 78.7 - - - +
356E TYR* 1.3 70.1 + - + +
357E VAL* 3.2 3.5 - - - +
358E LEU* 3.3 8.3 + - - +
359E ALA 3.3 14.4 + - - -
1268E ILE* 3.5 43.3 - - + +
1272E LEU* 5.5 4.0 - - + -
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Residues in contact with TYR 356 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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355E ALA* 1.3 77.8 - - + +
357E VAL* 1.3 60.9 + - - +
359E ALA* 3.0 8.8 + - + +
360E VAL* 2.9 36.6 + - + +
1265E ALA* 3.5 24.8 + - + -
1268E ILE* 3.6 38.1 - - + -
1269E SER* 3.0 32.7 + - - -
1272E LEU* 4.7 7.8 - - + +
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Residues in contact with VAL 357 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90E ALA* 4.1 27.4 - - + -
94E LEU* 6.2 4.3 - - + -
354E ASN* 3.3 41.3 - - - +
355E ALA 3.7 0.7 - - - +
356E TYR* 1.3 79.6 - - - +
358E LEU* 1.3 58.7 + - + +
360E VAL* 3.3 6.9 + - - +
361E LEU* 2.9 46.1 + - + +
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Residues in contact with LEU 358 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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319E CYS* 3.8 20.4 - - + +
322E GLY* 3.6 37.2 - - - +
323E ILE* 3.7 15.7 - - + +
326E HIS* 4.9 0.4 - - + -
354E ASN* 3.3 41.5 - - - +
355E ALA 3.3 7.3 + - - +
356E TYR 3.2 0.2 - - - -
357E VAL* 1.3 78.4 - - + +
359E ALA* 1.3 57.0 + - - +
361E LEU* 3.5 12.9 + - + -
362E LEU* 2.8 29.8 + - - +
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Residues in contact with ALA 359 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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323E ILE* 4.3 7.1 - - + +
355E ALA 3.3 7.5 + - - +
356E TYR* 3.0 16.5 + - + +
358E LEU* 1.3 79.5 - - - +
360E VAL* 1.3 57.5 + - + +
362E LEU* 3.3 9.1 + - - +
363E PHE* 2.8 27.9 + - - +
1260E VAL* 5.5 1.0 - - - +
1261E LEU* 4.1 13.7 - - + +
1264E ALA* 3.6 33.7 - - + -
1265E ALA* 5.1 1.8 - - + +
1268E ILE* 5.1 1.1 - - + -
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Residues in contact with VAL 360 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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86E VAL* 3.6 31.2 - - + -
356E TYR* 2.9 23.3 + - + +
357E VAL* 3.9 6.5 - - - +
359E ALA* 1.3 72.8 - - - +
361E LEU* 1.3 62.9 + - + +
363E PHE* 3.1 12.7 + - + +
364E LEU* 3.0 33.7 + - + +
1261E LEU* 4.3 14.8 - - + -
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Residues in contact with LEU 361 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83E PHE* 3.9 33.4 - - + -
86E VAL* 5.9 2.2 - - + -
87E CYS* 4.1 18.4 - - - -
319E CYS* 4.9 6.1 - - - -
357E VAL* 2.9 36.9 + - + +
358E LEU* 3.9 13.7 - - + +
360E VAL* 1.3 78.8 - - + +
362E LEU* 1.3 57.1 + - - +
364E LEU* 3.4 8.4 + - + +
365E ALA* 2.9 29.6 + - - +
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Residues in contact with LEU 362 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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312E LEU 6.0 0.2 - - - +
315E ALA 4.4 0.9 - - - +
316E GLY* 3.6 33.4 - - - +
319E CYS* 3.8 25.5 - - + -
320E ILE* 5.2 7.9 - - + -
323E ILE* 5.3 6.3 - - + -
358E LEU 2.8 19.1 + - - +
359E ALA* 3.4 10.3 - - - +
361E LEU* 1.3 78.1 - - - +
363E PHE* 1.3 56.3 + - - +
365E ALA* 3.3 5.5 + - + +
366E LEU* 2.9 42.4 + - + +
1260E VAL* 3.9 25.1 - - + -
1264E ALA* 5.9 1.6 - - + -
1285E LEU* 5.6 8.1 - - + -
1289E LEU* 5.0 8.1 - - + -
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Residues in contact with PHE 363 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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359E ALA 2.8 13.7 + - - +
360E VAL* 3.1 17.0 + - + +
362E LEU* 1.3 77.8 - - - +
364E LEU* 1.3 72.8 + - + +
366E LEU* 3.3 8.0 + - - +
367E LEU* 3.0 52.4 + - + +
1254E TYR 5.1 0.4 - - - -
1257E ALA* 3.1 44.9 - - + -
1258E CYS* 3.7 12.8 - - + -
1260E VAL* 5.3 1.8 - - - -
1261E LEU* 3.6 33.7 - - + -
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Residues in contact with LEU 364 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83E PHE* 3.6 41.7 - - + +
86E VAL* 4.3 31.0 - - + -
360E VAL* 3.0 21.7 + - + +
361E LEU* 3.8 8.5 - - + +
363E PHE* 1.3 87.6 - - + +
365E ALA* 1.3 64.1 + - - +
367E LEU* 3.3 12.9 + - + +
368E LEU* 3.0 35.6 + - + +
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Residues in contact with ALA 365 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83E PHE* 5.9 0.6 - - - -
312E LEU* 3.7 37.7 - - + +
315E ALA* 4.3 12.3 - - + -
361E LEU 2.9 17.9 + - - +
362E LEU* 3.6 11.2 - - + +
363E PHE 3.3 0.2 - - - -
364E LEU* 1.3 77.0 - - - +
366E LEU* 1.3 57.8 + - - +
368E LEU* 3.5 1.9 + - - -
369E GLN* 2.9 31.3 + - - +
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Residues in contact with LEU 366 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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312E LEU 5.3 2.7 - - - +
316E GLY* 5.9 2.5 - - - -
362E LEU* 2.9 27.0 + - + +
363E PHE* 3.8 4.9 - - - +
365E ALA* 1.3 75.1 - - - +
367E LEU* 1.3 60.3 + - - +
369E GLN* 3.6 9.6 - - - +
370E ARG* 2.9 67.7 + - + +
1256E GLY 5.7 0.4 - - - -
1257E ALA* 4.2 15.5 - - + -
1260E VAL* 3.6 42.6 - - + -
1289E LEU* 4.1 22.9 - - + -
1292E SER* 5.9 1.8 - - - +
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Residues in contact with LEU 367 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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363E PHE* 3.0 49.9 + - + +
364E LEU* 3.7 14.4 - - + +
366E LEU* 1.3 76.9 - - - +
368E LEU* 1.3 59.8 + - + +
370E ARG* 3.9 3.2 - - + +
371E THR* 2.9 34.2 + - - -
1253E GLU 5.5 0.2 - - - -
1254E TYR* 3.5 37.9 - - + +
1257E ALA* 3.7 22.0 - - + -
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Residues in contact with LEU 368 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79E PHE* 5.9 12.8 - - + -
80E ILE* 6.2 4.0 - - + -
83E PHE* 5.5 11.7 - - + -
312E LEU* 3.6 22.7 - - + -
364E LEU* 3.0 26.6 + - + +
365E ALA* 5.5 0.9 - - - -
367E LEU* 1.3 77.1 - - + +
369E GLN* 1.3 53.1 + - - +
371E THR* 3.7 7.8 - - + -
372E PHE* 2.7 58.6 + - + +
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Residues in contact with GLN 369 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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309E ALA* 3.3 26.5 + - + +
312E LEU* 3.6 14.9 - - + +
313E GLY* 3.3 32.0 + - - -
365E ALA 2.9 17.7 + - - +
366E LEU* 3.6 14.2 - - - +
368E LEU* 1.3 74.9 - - - +
370E ARG* 1.3 93.0 + - - +
372E PHE* 3.1 2.6 + - - +
373E LEU* 2.8 37.8 + - + +
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Residues in contact with ARG 370 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366E LEU* 2.9 43.9 + - + +
367E LEU* 3.9 4.3 - - + +
369E GLN* 1.3 111.4 + - - +
371E THR* 1.3 64.5 + - - +
373E LEU* 3.1 11.3 + - - +
374E GLN* 3.0 30.8 + - + +
1250E VAL* 5.7 1.6 - - - +
1253E GLU* 3.2 57.2 + - + +
1254E TYR* 5.5 5.6 - - + -
1257E ALA* 6.1 0.4 - - + -
1289E LEU* 4.2 8.7 + - - +
1292E SER* 3.7 23.3 + - - +
1293E ASN* 4.2 20.0 + - - +
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Residues in contact with THR 371 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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228E GLY* 4.1 28.6 + - - +
367E LEU 2.9 19.8 + - - -
368E LEU* 3.8 10.8 - - + -
370E ARG* 1.3 76.3 - - - +
372E PHE* 1.3 66.3 + - + +
374E GLN* 3.2 8.3 + - - +
375E ALA* 2.9 29.6 + - + +
1250E VAL* 5.5 2.7 - - - +
1254E TYR* 3.4 25.6 + - - +
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Residues in contact with PHE 372 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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305E PHE* 3.4 44.6 - + - +
308E LEU* 3.3 44.4 - - + -
309E ALA* 3.9 4.3 - - + -
312E LEU* 4.1 17.5 - - + -
368E LEU* 2.7 41.9 + - + +
369E GLN 3.7 3.6 - - - +
371E THR* 1.3 81.6 - - + +
373E LEU* 1.3 63.0 + - - +
375E ALA* 3.2 6.4 + - + +
376E SER* 3.0 20.3 + - - -
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Residues in contact with LEU 373 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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306E ARG* 3.9 26.2 - - + +
309E ALA* 3.9 20.8 - - + +
310E ASP* 5.7 1.3 - - - +
369E GLN* 2.8 24.1 + - + +
370E ARG* 3.5 11.4 - - - +
372E PHE* 1.3 73.1 - - - +
374E GLN* 1.3 73.5 + - - +
376E SER* 2.6 32.6 + - - +
377E TYR* 2.8 33.3 + - + +
444E GLN* 6.1 1.3 - - - +
1249E GLU* 5.8 0.4 - - - +
1253E GLU* 5.9 1.8 - - - +
2001E GBM 5.6 2.7 - - + -
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Residues in contact with GLN 374 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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228E GLY 4.9 2.7 - - - +
230E TYR* 3.9 11.5 + - + +
370E ARG 3.0 19.0 + - - +
371E THR* 3.6 7.4 - - - +
373E LEU* 1.3 93.0 - - - +
375E ALA* 1.3 51.6 + - - +
377E TYR* 3.2 17.9 - - - +
378E TYR* 2.7 37.8 + - - +
1246E ARG* 3.4 15.4 + - - -
1249E GLU* 3.0 39.3 + - - +
1250E VAL* 3.4 33.7 - - + -
1253E GLU* 3.7 6.0 + - - +
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Residues in contact with ALA 375 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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227E LYS 5.5 8.3 - - - +
228E GLY* 6.2 1.6 - - - -
230E TYR* 5.2 0.7 - - - -
305E PHE* 3.2 31.9 - - + -
371E THR* 2.9 16.4 + - + +
372E PHE* 3.2 10.3 + - + +
374E GLN* 1.3 75.1 - - - +
376E SER* 1.3 62.9 + - - +
378E TYR* 3.3 5.9 + - - +
379E VAL* 3.1 31.1 + - + +
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Residues in contact with SER 376 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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302E SER* 3.2 39.6 - - - +
305E PHE* 4.1 1.5 - - - +
306E ARG* 3.5 32.7 + - - -
372E PHE 3.0 12.7 + - - -
373E LEU* 2.6 26.8 + - - +
375E ALA* 1.3 76.0 - - - +
377E TYR* 1.3 62.1 + - - +
379E VAL 3.4 0.7 + - - -
380E ALA* 3.0 25.5 + - - +
436E PRO* 5.9 0.2 - - - -
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Residues in contact with TYR 377 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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306E ARG* 4.0 13.5 - - - -
373E LEU* 2.8 28.0 + - + +
374E GLN* 3.1 34.1 + - - +
376E SER* 1.3 82.1 + - - +
378E TYR* 1.3 56.4 + - - +
380E ALA* 3.4 3.4 + - - +
381E ILE* 2.9 35.9 + - - +
1246E ARG* 3.9 15.7 - - - -
1249E GLU* 4.5 5.8 - - - -
2001E GBM 2.8 105.6 - + + -
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Residues in contact with TYR 378 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217E PHE* 3.5 26.2 - + - -
219E GLN* 3.2 50.5 - - + +
220E PRO 4.9 1.0 - - - -
227E LYS 4.9 4.9 - - - -
230E TYR* 3.3 29.2 - + - +
298E ARG* 5.7 3.4 - - - -
374E GLN 2.7 13.6 + - - +
375E ALA* 4.0 5.2 - - - +
376E SER 3.3 0.2 - - - -
377E TYR* 1.3 73.0 - - - +
379E VAL* 1.3 66.4 + - + +
381E ILE* 4.0 5.4 - - + -
382E GLU* 2.8 49.5 + - + +
1239E LEU* 4.7 3.6 - - + -
1242E THR* 4.5 15.0 - - + -
1243E ALA* 5.7 4.3 - - + -
1246E ARG* 4.5 6.1 - - + -
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Residues in contact with VAL 379 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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298E ARG* 3.2 56.3 - - + +
299E LEU* 4.8 0.7 - - - -
301E LEU* 4.7 15.3 - - + -
302E SER* 3.7 21.3 - - - +
305E PHE* 5.2 3.1 - - + -
375E ALA* 3.1 19.5 + - + +
378E TYR* 1.3 83.4 - - + +
380E ALA* 1.3 66.8 + - - +
381E ILE 3.2 1.1 - - - -
382E GLU* 3.4 5.3 + - - +
383E THR* 3.0 29.7 + - - +
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Residues in contact with ALA 380 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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299E LEU* 5.1 4.0 - - - -
302E SER* 4.3 4.8 - - - -
306E ARG* 5.5 1.1 - - - +
376E SER 3.0 17.1 + - - +
377E TYR* 3.7 6.7 - - - +
379E VAL* 1.3 78.2 - - - +
381E ILE* 1.3 63.7 + - - +
383E THR* 3.3 6.4 + - - -
384E GLY* 3.0 18.0 + - - -
432E PHE 4.1 8.0 - - - +
433E PHE* 3.6 40.3 + - + +
436E PRO* 4.4 9.6 - - + -
2001E GBM 5.1 2.0 - - + -
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Residues in contact with ILE 381 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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377E TYR 2.9 23.5 + - - +
378E TYR 4.0 4.3 - - - +
380E ALA* 1.3 76.5 - - - +
382E GLU* 1.3 58.0 + - - +
384E GLY* 2.8 4.3 + - - -
385E ILE* 2.8 44.4 + - + +
433E PHE* 3.4 38.4 - - + -
1239E LEU* 5.0 2.0 - - + -
1242E THR* 3.1 49.6 - - + +
1246E ARG* 5.3 0.2 - - - +
2001E GBM 3.9 30.3 - - + -
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Residues in contact with GLU 382 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217E PHE* 4.6 4.5 - - - -
220E PRO* 5.1 7.6 - - - +
257E MET* 5.1 15.2 - - + +
298E ARG* 2.9 37.0 + - + +
378E TYR* 2.8 53.0 + - + +
379E VAL* 3.4 6.9 + - - +
381E ILE* 1.3 78.0 - - - +
383E THR* 1.3 62.8 + - - +
385E ILE* 3.7 6.7 - - - +
386E ASN* 3.0 37.7 + - - +
1239E LEU* 4.4 12.3 - - + -
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Residues in contact with THR 383 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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295E PHE* 4.0 24.6 - - + +
298E ARG* 3.7 22.6 - - - +
299E LEU* 4.4 9.3 + - + -
379E VAL* 3.0 20.0 + - - +
380E ALA* 3.5 6.9 - - - -
382E GLU* 1.3 73.4 - - - +
384E GLY* 1.3 67.1 + - - +
386E ASN* 3.9 2.2 - - - +
387E LEU* 2.9 33.9 + - + +
432E PHE* 3.4 34.3 - - + -
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Residues in contact with GLY 384 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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380E ALA 3.0 10.5 + - - -
381E ILE 2.8 8.8 + - - -
383E THR* 1.3 75.7 - - - +
385E ILE* 1.3 50.3 + - - -
387E LEU* 3.0 8.8 + - - +
388E ARG* 2.8 32.9 + - - +
429E MET* 3.9 16.2 - - - +
432E PHE* 4.4 14.3 - - - +
433E PHE* 4.0 12.8 - - - -
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Residues in contact with ILE 385 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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257E MET* 4.3 12.6 - - + -
381E ILE* 2.8 27.4 + - + +
382E GLU* 3.7 8.5 - - - +
384E GLY* 1.3 70.4 - - - +
386E ASN* 1.3 64.9 + - - +
388E ARG* 2.9 14.4 + - - +
389E GLY* 3.0 10.9 + - - -
429E MET* 3.4 24.5 - - + +
1235E ASN* 3.4 37.7 + - + +
1238E SER* 4.1 8.1 - - - -
1239E LEU* 3.4 51.4 - - + +
2001E GBM 5.7 0.2 - - + -
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Residues in contact with ASN 386 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
257E MET* 3.1 39.7 - - - +
262E ASN* 2.5 43.4 + - - +
265E ARG* 5.0 1.4 - - - +
295E PHE* 3.8 17.4 - - + -
382E GLU* 3.0 25.4 + - - +
383E THR* 4.1 0.8 - - - +
385E ILE* 1.3 79.6 - - - +
387E LEU* 1.3 56.6 + - - +
389E GLY* 3.4 0.9 + - - +
390E ALA* 3.0 31.5 + - - +
1235E ASN* 5.0 3.5 + - - +
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Residues in contact with LEU 387 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266E LEU* 5.0 2.7 - - + -
291E LEU* 3.4 32.8 - - + -
295E PHE* 3.4 34.3 - - + -
383E THR* 2.9 31.8 + - + +
384E GLY* 3.2 11.2 - - - +
386E ASN* 1.3 74.0 - - - +
388E ARG* 1.3 64.7 + - - +
390E ALA* 4.6 1.1 - - + +
391E ILE* 2.9 49.4 + - + +
428E LEU* 6.0 4.9 - - + -
429E MET* 6.3 0.7 - - - -
432E PHE* 3.8 27.1 - - + -
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Residues in contact with ARG 388 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384E GLY 2.8 14.9 + - - +
385E ILE 2.9 6.2 + - - +
387E LEU* 1.3 75.1 - - - +
389E GLY* 1.3 61.5 + - - +
391E ILE* 3.9 0.7 - - - +
392E GLN* 2.9 49.8 + - - +
425E THR* 3.4 30.7 - - + +
426E ASN* 5.7 1.6 - - - +
428E LEU* 6.6 0.2 - - - -
429E MET* 3.4 42.6 - - + +
1231E THR* 5.7 0.2 - - - +
1234E ASN* 2.8 55.1 + - - +
1235E ASN* 2.6 30.9 + - - +
1238E SER* 3.9 7.1 + - - -
2001E GBM 5.3 1.0 - - - +
----------------------------------------------------------
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Residues in contact with GLY 389 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259E ALA* 3.9 12.1 - - - +
262E ASN* 5.9 0.2 - - - -
385E ILE 3.0 12.7 + - - -
386E ASN* 3.9 2.5 - - - -
388E ARG* 1.3 77.8 - - - +
390E ALA* 1.3 56.2 + - - +
392E GLN* 3.8 1.7 - - - +
393E THR* 2.7 33.3 + - - -
1231E THR* 3.6 25.1 - - - +
1235E ASN* 4.4 8.4 - - - +
----------------------------------------------------------
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Residues in contact with ALA 390 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259E ALA* 4.2 1.9 + - - +
262E ASN* 3.6 11.0 - - + +
263E TYR* 3.4 46.6 - - - +
266E LEU* 3.9 15.4 - - + +
295E PHE* 5.0 2.2 - - + -
386E ASN 3.0 16.8 + - - +
387E LEU* 4.1 3.8 - - - +
389E GLY* 1.3 76.3 - - - +
391E ILE* 1.3 57.3 + - - +
393E THR 3.3 1.0 + - - -
394E LYS* 2.9 24.1 + - - +
----------------------------------------------------------
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Residues in contact with ILE 391 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266E LEU* 4.4 11.4 - - + -
291E LEU* 4.3 11.0 - - + -
387E LEU* 2.9 46.9 + - + +
388E ARG* 4.1 2.5 - - - +
390E ALA* 1.3 73.2 - - - +
392E GLN* 1.3 61.0 + - - +
394E LYS* 3.2 7.7 + - + +
395E ILE* 2.9 46.9 + - + +
425E THR* 4.3 15.3 - - + +
428E LEU* 3.7 29.8 - - + -
610E LEU* 4.6 19.5 - - + -
----------------------------------------------------------
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Residues in contact with GLN 392 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388E ARG* 2.9 44.3 + - - +
389E GLY* 3.8 3.6 - - - +
391E ILE* 1.3 76.1 - - - +
393E THR* 1.3 56.4 + - - +
395E ILE* 3.4 8.2 + - + +
396E TYR* 2.9 30.0 + - - +
421E VAL* 4.3 23.2 + - + +
425E THR* 4.3 11.4 - - + +
1200E LEU* 3.6 28.0 - - + +
1204E PHE* 5.5 2.1 - - - -
1227E LEU* 4.2 8.7 - - + +
1231E THR* 3.2 33.5 + - + +
1234E ASN* 5.1 3.5 + - - +
----------------------------------------------------------
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Residues in contact with THR 393 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259E ALA* 3.5 18.7 + - - +
260E LEU* 5.6 0.9 - - - -
263E TYR* 3.6 28.9 - - + -
389E GLY 2.7 20.2 + - - -
390E ALA 3.5 7.6 - - - -
392E GLN* 1.3 75.8 - - - +
394E LYS* 1.3 57.4 + - - +
396E TYR* 3.3 9.3 + - + +
397E ASN* 2.9 44.2 + - - +
1227E LEU* 5.0 4.7 - - - +
1228E LEU* 4.3 14.2 - - + +
1231E THR* 5.2 1.7 + - - +
----------------------------------------------------------
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Residues in contact with LYS 394 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263E TYR* 3.4 30.6 + - + +
266E LEU* 4.0 12.6 - - + -
267E CYS* 5.0 8.1 - - - -
270E PHE* 4.3 38.2 - - + +
390E ALA 2.9 17.4 + - - +
391E ILE* 3.2 9.4 + - + +
393E THR* 1.3 74.3 - - - +
395E ILE* 1.3 60.9 + - + +
397E ASN* 3.2 3.8 + - + +
398E LYS* 2.9 30.4 + - + +
610E LEU* 6.2 5.2 - - + -
614E LEU* 6.0 8.1 - - + -
----------------------------------------------------------
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Residues in contact with ILE 395 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391E ILE* 2.9 36.8 + - + +
392E GLN* 3.7 6.7 - - - +
394E LYS* 1.3 76.3 - - + +
396E TYR* 1.3 59.1 + - - +
398E LYS* 3.2 4.7 + - - +
399E ILE* 3.0 29.6 + - + +
417E ILE* 5.1 2.0 - - + -
420E LEU* 4.8 9.6 - - + -
421E VAL* 3.8 34.5 - - + -
425E THR* 4.3 9.0 - - - +
610E LEU* 4.2 23.8 - - + -
613E PHE* 3.8 23.7 - - + -
1204E PHE* 4.0 14.4 - - + -
----------------------------------------------------------
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Residues in contact with TYR 396 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392E GLN 2.9 18.2 + - - +
393E THR* 3.4 8.5 - - + +
395E ILE* 1.3 78.4 - - - +
397E ASN* 1.3 60.8 + - - +
399E ILE* 3.2 12.5 + - + +
400E MET* 2.9 52.7 + - + +
1203E HIS* 4.4 5.2 - + - -
1204E PHE* 4.9 12.8 - + + -
1207E THR* 3.6 24.6 - - + +
1220E GLU 3.7 3.3 + - - -
1223E PHE* 2.9 38.1 - - - +
1224E GLN* 3.0 40.4 + - + -
1227E LEU* 3.4 28.0 - - + -
----------------------------------------------------------
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Residues in contact with ASN 397 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263E TYR* 2.9 42.0 + - - +
393E THR* 2.9 31.5 + - - +
394E LYS* 3.2 4.0 + - + +
396E TYR* 1.3 75.8 - - - +
398E LYS* 1.3 61.0 + - - +
400E MET* 3.2 6.1 + - - +
401E HIS* 2.9 44.6 + - + -
1224E GLN* 3.2 30.8 + - - +
----------------------------------------------------------
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Residues in contact with LYS 398 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394E LYS* 2.9 15.4 + - + +
395E ILE* 3.2 9.2 + - - +
397E ASN* 1.3 75.1 - - - +
399E ILE* 1.3 62.9 + - - +
401E HIS* 3.1 19.4 + - + -
402E MET* 3.3 37.8 - - + +
613E PHE* 2.6 42.0 + - + +
614E LEU* 3.2 22.0 + - + +
615E SER 2.5 33.4 + - - -
----------------------------------------------------------
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Residues in contact with ILE 399 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395E ILE* 3.0 19.4 + - + +
396E TYR* 3.2 11.0 + - + +
398E LYS* 1.3 75.0 - - - +
400E MET* 1.3 73.1 + - + +
402E MET* 3.2 26.9 + - + +
417E ILE* 4.2 9.0 - - + -
613E PHE* 3.8 14.8 - - + -
1204E PHE* 3.6 38.1 - - + -
1207E THR* 4.8 5.6 - - + +
1208E VAL* 4.0 23.6 - - + -
1211E LEU* 3.5 31.0 - - + +
1215E ARG* 3.8 0.2 + - - -
----------------------------------------------------------
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Residues in contact with MET 400 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396E TYR* 2.9 60.3 + - + +
397E ASN* 3.2 15.7 + - - +
399E ILE* 1.3 89.6 - - + +
401E HIS* 1.3 60.9 + - + +
1207E THR* 3.8 16.8 - - + -
1211E LEU* 4.1 11.9 - - + -
1214E ILE* 5.5 4.5 - - + -
1215E ARG* 2.6 27.3 + - - +
1220E GLU* 3.4 36.4 - - + +
1224E GLN* 4.6 6.3 - - - +
----------------------------------------------------------
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Residues in contact with HIS 401 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397E ASN* 2.9 34.6 + - + +
398E LYS* 3.1 18.4 + - + +
399E ILE 3.1 0.6 - - - -
400E MET* 1.3 82.8 + - + +
402E MET* 1.3 60.3 + - - +
403E SER* 3.1 17.5 + - - +
1215E ARG* 3.8 2.2 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il