Contacts of the helix formed by residues 355 - 401 (chain G) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 355 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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323G ILE* 4.0 6.5 - - + +
326G HIS* 5.2 8.5 - - + -
327G LEU* 5.5 4.5 - - + -
354G ASN* 1.3 79.1 - - - +
356G TYR* 1.3 70.2 + - + +
357G VAL* 3.2 3.7 - - - +
358G LEU* 3.3 8.1 + - - +
359G ALA 3.3 14.2 + - - -
1268G ILE* 3.5 43.0 - - + +
1272G LEU* 5.5 4.7 - - + -
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Residues in contact with TYR 356 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
355G ALA* 1.3 79.3 - - + +
357G VAL* 1.3 59.9 + - - +
359G ALA* 3.0 9.0 + - + +
360G VAL* 2.9 37.3 + - + +
1265G ALA* 3.7 24.2 - - + -
1268G ILE* 3.6 38.1 - - + -
1269G SER* 3.0 32.4 + - - -
1272G LEU* 4.7 8.2 - - + +
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Residues in contact with VAL 357 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90G ALA* 4.1 26.5 - - + -
94G LEU* 6.2 4.0 - - + -
354G ASN* 3.3 42.2 - - - +
355G ALA 3.7 0.7 - - - +
356G TYR* 1.3 77.9 - - - +
358G LEU* 1.3 60.5 + - + +
360G VAL* 3.3 6.7 + - - +
361G LEU* 2.9 46.3 + - + +
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Residues in contact with LEU 358 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319G CYS* 3.8 22.3 - - + +
322G GLY* 3.6 35.4 - - - -
323G ILE* 3.7 15.9 - - + +
326G HIS* 4.9 0.7 - - + -
354G ASN* 3.3 40.6 - - - +
355G ALA 3.3 7.3 + - - +
356G TYR 3.2 0.2 - - - -
357G VAL* 1.3 78.0 - - + +
359G ALA* 1.3 58.5 + - - +
361G LEU* 3.8 12.1 - - + -
362G LEU* 2.8 30.4 + - - +
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Residues in contact with ALA 359 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323G ILE* 4.3 8.0 - - + +
355G ALA 3.3 8.9 + - - +
356G TYR* 3.0 14.8 + - + +
358G LEU* 1.3 78.8 - - - +
360G VAL* 1.3 57.1 + - - +
362G LEU* 3.3 9.5 + - - +
363G PHE* 2.8 28.1 + - - +
1260G VAL* 5.5 1.6 - - - +
1261G LEU* 4.1 14.6 - - + +
1264G ALA* 3.6 32.3 - - + -
1265G ALA* 5.1 2.0 - - + +
1268G ILE* 5.1 1.3 - - + -
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Residues in contact with VAL 360 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86G VAL* 3.6 31.2 - - + -
356G TYR* 2.9 24.2 + - + +
357G VAL* 3.3 6.3 + - - +
359G ALA* 1.3 74.1 - - - +
361G LEU* 1.3 62.9 + - + +
363G PHE* 3.1 12.2 + - + +
364G LEU* 3.0 33.8 + - + +
1261G LEU* 4.3 14.8 - - + -
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Residues in contact with LEU 361 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83G PHE* 3.9 32.3 - - + -
86G VAL* 5.9 2.2 - - + -
87G CYS* 4.1 18.4 - - - -
319G CYS* 4.9 5.8 - - - -
357G VAL* 2.9 36.8 + - + +
358G LEU* 3.9 14.6 - - + +
360G VAL* 1.3 79.0 - - + +
362G LEU* 1.3 57.8 + - - +
364G LEU* 3.4 9.2 + - + +
365G ALA* 2.9 30.2 + - - +
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Residues in contact with LEU 362 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315G ALA 4.4 0.9 - - - +
316G GLY* 3.6 33.4 - - - +
319G CYS* 3.8 25.7 - - + -
320G ILE* 5.2 8.3 - - + -
323G ILE* 5.3 6.3 - - + -
358G LEU 2.8 18.5 + - - +
359G ALA* 3.4 10.5 - - - +
361G LEU* 1.3 77.5 - - - +
363G PHE* 1.3 56.0 + - - +
365G ALA* 3.3 6.1 + - + +
366G LEU* 2.9 42.7 + - + +
1260G VAL* 3.9 25.4 - - + -
1264G ALA* 5.9 1.3 - - + -
1285G LEU* 5.6 8.5 - - + -
1289G LEU* 5.0 7.6 - - + -
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Residues in contact with PHE 363 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359G ALA 2.8 14.3 + - - +
360G VAL* 3.1 16.6 + - + +
362G LEU* 1.3 77.0 - - - +
364G LEU* 1.3 72.1 + - + +
366G LEU* 3.3 7.3 + - - +
367G LEU* 3.0 52.3 + - + +
1254G TYR 5.1 0.9 - - - -
1257G ALA* 3.1 44.0 - - + -
1258G CYS* 3.7 12.6 - - + -
1260G VAL* 5.3 2.4 - - + +
1261G LEU* 3.6 31.0 - - + -
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Residues in contact with LEU 364 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83G PHE* 3.6 42.0 - - + +
86G VAL* 4.3 31.2 - - + -
360G VAL* 3.0 20.8 + - + +
361G LEU* 3.8 9.4 - - + +
363G PHE* 1.3 88.5 - - + +
365G ALA* 1.3 62.4 + - - +
367G LEU* 3.3 12.9 + - + +
368G LEU* 3.0 35.3 + - + +
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Residues in contact with ALA 365 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83G PHE* 5.9 0.4 - - - -
312G LEU* 3.7 36.6 - - + +
315G ALA* 4.3 12.1 - - + -
361G LEU 2.9 18.4 + - - +
362G LEU* 3.6 11.4 - - + +
364G LEU* 1.3 77.7 - - - +
366G LEU* 1.3 57.1 + - + +
368G LEU* 3.8 1.7 - - - -
369G GLN* 2.9 31.5 + - - +
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Residues in contact with LEU 366 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312G LEU 5.3 2.2 - - - +
313G GLY* 5.9 0.4 - - - -
316G GLY* 5.9 2.0 - - - -
362G LEU* 2.9 28.1 + - + +
363G PHE* 3.8 4.3 - - - +
364G LEU 3.3 0.2 - - - -
365G ALA* 1.3 74.8 - - + +
367G LEU* 1.3 60.9 + - - +
369G GLN* 3.6 9.5 - - - +
370G ARG* 2.9 67.6 + - + +
1257G ALA* 4.2 15.7 - - + -
1260G VAL* 3.6 42.8 - - + -
1289G LEU* 4.1 21.8 - - + -
1292G SER* 5.9 2.5 - - - +
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Residues in contact with LEU 367 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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363G PHE* 3.0 51.0 + - + +
364G LEU* 3.3 14.3 + - + +
366G LEU* 1.3 77.3 - - - +
368G LEU* 1.3 59.9 + - + +
370G ARG* 3.9 3.8 - - + +
371G THR* 2.9 33.3 + - - -
1253G GLU 5.2 0.4 - - - +
1254G TYR* 3.5 37.9 - - + +
1257G ALA* 3.7 21.3 - - + -
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Residues in contact with LEU 368 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79G PHE* 5.9 13.2 - - + -
80G ILE* 6.2 4.0 - - + -
83G PHE* 5.5 12.3 - - + -
312G LEU* 3.6 22.0 - - + -
364G LEU* 3.0 26.4 + - + +
365G ALA* 5.5 0.9 - - - -
367G LEU* 1.3 78.6 - - + +
369G GLN* 1.3 54.2 + - - +
371G THR* 4.4 8.1 - - + -
372G PHE* 2.7 58.2 + - + +
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Residues in contact with GLN 369 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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309G ALA* 3.3 25.1 + - + +
310G ASP* 5.6 0.2 - - - +
312G LEU* 3.6 15.6 - - + +
313G GLY* 3.3 32.6 + - - -
365G ALA 2.9 18.1 + - - +
366G LEU* 3.6 13.7 - - - +
367G LEU 3.2 0.2 - - - -
368G LEU* 1.3 74.6 - - - +
370G ARG* 1.3 90.6 + - - +
372G PHE* 3.1 2.4 + - - +
373G LEU* 2.8 38.5 + - + +
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Residues in contact with ARG 370 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366G LEU* 2.9 42.4 + - + +
367G LEU* 3.9 4.0 - - + +
369G GLN* 1.3 113.6 + - - +
371G THR* 1.3 63.9 + - - +
373G LEU* 3.1 11.0 + - - +
374G GLN* 3.0 30.5 + - - +
1250G VAL* 5.7 1.3 - - - +
1253G GLU* 3.2 56.8 + - + +
1254G TYR* 5.5 5.4 - - + -
1257G ALA* 6.1 1.1 - - + -
1289G LEU* 4.2 8.3 + - - +
1292G SER* 3.7 23.5 + - - -
1293G ASN* 4.2 20.0 + - - +
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Residues in contact with THR 371 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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228G GLY* 4.1 29.1 + - - +
367G LEU 2.9 21.0 + - - -
368G LEU* 3.8 10.3 - - + -
370G ARG* 1.3 77.5 - - - +
372G PHE* 1.3 66.2 + - + +
374G GLN* 3.2 8.3 + - - +
375G ALA* 2.9 29.4 + - + +
1250G VAL* 5.5 3.4 - - - +
1254G TYR* 3.4 25.3 + - - +
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Residues in contact with PHE 372 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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305G PHE* 3.4 44.6 - + - +
308G LEU* 3.3 45.8 - - + -
309G ALA* 3.9 4.7 - - + -
312G LEU* 4.1 16.4 - - + -
368G LEU* 2.7 41.1 + - + +
369G GLN 3.7 3.1 - - - +
371G THR* 1.3 81.9 - - + +
373G LEU* 1.3 64.1 + - - +
375G ALA* 3.2 7.0 + - + +
376G SER* 3.0 19.8 + - - -
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Residues in contact with LEU 373 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306G ARG* 3.9 26.2 - - + +
309G ALA* 3.9 21.3 - - + +
310G ASP* 5.7 1.1 - - - +
369G GLN* 2.8 25.1 + - + +
370G ARG* 3.5 11.7 - - - +
372G PHE* 1.3 72.7 - - - +
374G GLN* 1.3 73.5 + - - +
376G SER* 2.6 32.2 + - - +
377G TYR* 2.8 33.5 + - + +
444G GLN* 6.1 1.6 - - - +
1249G GLU* 5.8 0.4 - - - +
1253G GLU* 5.9 1.8 - - - +
2001G GBM 5.6 2.9 - - + -
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Residues in contact with GLN 374 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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228G GLY 4.9 3.1 - - - +
230G TYR* 3.9 10.9 + - - +
370G ARG 3.0 18.8 + - - +
371G THR* 3.6 6.7 - - - +
373G LEU* 1.3 92.9 - - - +
375G ALA* 1.3 51.6 + - - +
377G TYR* 3.1 18.6 + - - +
378G TYR* 2.7 37.2 + - - +
1246G ARG* 3.4 14.3 + - - -
1249G GLU* 3.0 38.9 + - - +
1250G VAL* 3.4 33.7 - - + -
1253G GLU* 3.7 5.8 + - - +
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Residues in contact with ALA 375 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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227G LYS 5.5 8.3 - - - +
228G GLY* 6.2 1.6 - - - -
230G TYR* 5.2 0.7 - - - -
305G PHE* 3.2 31.4 - - + -
371G THR* 2.9 16.3 + - + +
372G PHE* 3.2 10.5 + - + +
374G GLN* 1.3 75.5 - - - +
376G SER* 1.3 63.2 + - - +
378G TYR* 3.3 6.3 + - - -
379G VAL* 3.1 30.6 + - + +
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Residues in contact with SER 376 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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302G SER* 3.2 38.7 - - - +
305G PHE* 4.1 1.5 - - - +
306G ARG* 3.5 31.9 + - - -
372G PHE 3.0 12.3 + - - -
373G LEU* 2.6 27.5 + - - +
375G ALA* 1.3 75.2 - - - +
377G TYR* 1.3 62.8 + - - +
379G VAL 3.4 0.2 + - - -
380G ALA* 3.0 25.6 + - - +
436G PRO* 5.4 0.4 - - - +
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Residues in contact with TYR 377 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306G ARG* 4.0 13.2 - - - -
373G LEU* 2.8 27.5 + - + +
374G GLN* 3.2 34.8 - - - +
376G SER* 1.3 84.4 + - - +
378G TYR* 1.3 56.7 + - - +
380G ALA* 3.7 3.9 - - - +
381G ILE* 2.9 35.5 + - - +
1246G ARG* 3.9 16.6 - - - -
1249G GLU* 4.5 6.1 - - - -
2001G GBM 2.8 105.3 - + + -
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Residues in contact with TYR 378 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217G PHE* 3.5 25.7 - + - -
219G GLN* 3.2 50.4 - - + +
220G PRO* 4.9 1.2 - - - +
227G LYS 4.9 4.3 - - - -
230G TYR* 3.3 28.9 - + - +
298G ARG* 5.7 3.1 - - - -
374G GLN 2.7 14.5 + - - +
375G ALA* 4.0 4.9 - - - +
377G TYR* 1.3 73.0 - - - +
379G VAL* 1.3 66.0 + - + +
381G ILE* 4.0 5.6 - - + +
382G GLU* 2.8 50.7 + - + +
1239G LEU* 4.7 3.8 - - + -
1242G THR* 4.5 14.6 - - + -
1243G ALA* 5.7 3.6 - - + -
1246G ARG* 4.5 6.1 - - + -
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Residues in contact with VAL 379 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298G ARG* 3.2 55.0 - - + +
299G LEU* 4.8 0.9 - - - -
301G LEU* 4.7 15.3 - - + -
302G SER* 3.7 21.8 - - - +
305G PHE* 5.2 2.9 - - + -
375G ALA* 3.1 20.0 + - + +
378G TYR* 1.3 82.6 - - + +
380G ALA* 1.3 67.3 + - - +
381G ILE 3.2 1.3 - - - -
382G GLU* 3.4 5.5 + - - +
383G THR* 3.0 29.5 + - - +
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Residues in contact with ALA 380 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299G LEU* 5.1 3.6 - - - -
302G SER* 4.3 4.6 - - - -
306G ARG* 5.5 1.1 - - - +
376G SER 3.0 17.3 + - - +
377G TYR* 3.7 6.3 - - - +
379G VAL* 1.3 78.3 - - - +
381G ILE* 1.3 63.3 + - + +
383G THR* 3.3 6.0 + - - -
384G GLY 3.0 18.2 + - - -
432G PHE* 4.1 8.2 - - - +
433G PHE* 3.6 40.7 + - + +
436G PRO* 4.4 9.2 - - + -
2001G GBM 5.1 1.8 - - + -
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Residues in contact with ILE 381 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377G TYR 2.9 24.4 + - - +
378G TYR* 4.0 4.3 - - + +
380G ALA* 1.3 76.6 - - - +
382G GLU* 1.3 58.4 + - - +
384G GLY* 2.8 3.6 + - - -
385G ILE* 2.8 44.4 + - + +
433G PHE* 3.4 39.0 - - + -
1239G LEU* 5.0 2.0 - - + -
1242G THR* 3.1 49.6 - - + +
1246G ARG* 5.3 0.4 - - - +
2001G GBM 3.9 29.2 - - + -
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Residues in contact with GLU 382 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217G PHE* 4.6 4.7 - - - -
220G PRO* 5.1 7.6 - - - +
257G MET* 5.1 14.8 - - + +
298G ARG* 2.9 37.2 + - + +
378G TYR* 2.8 54.0 + - + +
379G VAL* 3.4 6.7 + - - +
381G ILE* 1.3 78.4 - - - +
383G THR* 1.3 62.4 + - - +
385G ILE* 3.4 6.9 + - - +
386G ASN* 3.0 37.3 + - - +
1239G LEU* 4.4 10.5 - - + -
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Residues in contact with THR 383 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295G PHE* 4.0 24.8 - - + +
298G ARG* 3.7 21.8 - - - +
299G LEU* 4.4 9.7 + - + -
379G VAL* 3.0 20.5 + - - +
380G ALA* 3.5 6.7 - - - -
382G GLU* 1.3 73.9 - - - +
384G GLY* 1.3 65.9 - - - +
386G ASN* 3.9 2.2 - - - +
387G LEU* 2.9 33.9 + - + +
432G PHE* 3.4 34.5 - - + -
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Residues in contact with GLY 384 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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380G ALA 3.0 10.5 + - - -
381G ILE 2.8 7.9 + - - -
383G THR* 1.3 74.6 - - - +
385G ILE* 1.3 49.9 + - - -
387G LEU* 3.0 8.7 + - - +
388G ARG* 2.8 33.1 + - - +
428G LEU 5.8 0.2 - - - -
429G MET* 3.9 14.7 - - - +
432G PHE* 4.4 14.8 - - - +
433G PHE* 4.0 12.8 - - - -
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Residues in contact with ILE 385 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
257G MET* 4.3 12.6 - - + -
381G ILE* 2.8 28.7 + - + +
382G GLU* 3.7 7.9 - - - +
384G GLY* 1.3 69.1 - - - +
386G ASN* 1.3 65.3 + - - +
388G ARG* 2.9 14.2 + - - +
389G GLY* 3.0 11.8 + - - -
429G MET* 3.4 24.7 - - + +
433G PHE* 5.7 0.2 - - + -
1235G ASN* 3.4 37.2 + - + +
1238G SER* 4.1 8.3 - - - -
1239G LEU* 3.4 50.7 - - + +
2001G GBM 5.7 0.4 - - + -
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Residues in contact with ASN 386 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
257G MET* 3.1 40.9 - - - +
262G ASN* 2.5 44.3 + - - +
265G ARG* 5.0 1.8 - - - +
295G PHE* 3.8 17.4 - - + -
382G GLU* 3.0 25.3 + - - +
383G THR* 4.1 0.8 - - - +
385G ILE* 1.3 79.4 - - - +
387G LEU* 1.3 58.0 + - - +
389G GLY* 3.4 1.4 + - - +
390G ALA* 3.0 31.4 + - - +
1235G ASN* 5.0 3.1 + - - +
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Residues in contact with LEU 387 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266G LEU* 5.0 2.7 - - + -
291G LEU* 3.4 32.1 - - + +
295G PHE* 3.4 34.3 - - + -
383G THR* 2.9 32.7 + - + +
384G GLY* 3.2 11.0 - - - +
386G ASN* 1.3 73.9 - - - +
388G ARG* 1.3 66.0 + - - +
390G ALA* 4.8 0.4 - - - -
391G ILE* 2.9 49.8 + - + +
428G LEU* 6.0 5.2 - - + -
429G MET* 6.3 0.7 - - - -
432G PHE* 3.8 26.9 - - + -
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Residues in contact with ARG 388 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384G GLY 2.8 15.9 + - - +
385G ILE 3.4 5.4 - - - +
387G LEU* 1.3 72.7 - - - +
389G GLY* 1.3 61.1 + - - +
391G ILE* 4.1 0.3 - - - +
392G GLN* 2.9 51.5 + - - +
425G THR* 3.4 31.0 - - + +
426G ASN* 5.7 1.6 - - - +
429G MET* 3.4 42.8 - - + +
1231G THR* 6.2 0.2 - - - -
1234G ASN* 2.8 55.4 + - - +
1235G ASN* 2.6 29.9 + - - +
1238G SER* 3.9 6.9 + - - -
2001G GBM 5.3 1.2 - - - +
----------------------------------------------------------
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Residues in contact with GLY 389 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259G ALA* 3.9 12.1 - - - +
262G ASN* 5.9 0.2 - - - -
385G ILE 3.0 12.0 + - - -
386G ASN* 3.9 2.5 - - - -
388G ARG* 1.3 77.4 - - - +
390G ALA* 1.3 55.6 + - - +
392G GLN* 3.8 2.3 - - - +
393G THR* 2.7 33.4 + - - -
1231G THR* 3.6 25.2 - - - +
1235G ASN* 4.4 8.0 - - - +
----------------------------------------------------------
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Residues in contact with ALA 390 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259G ALA* 4.2 2.1 + - - +
262G ASN* 3.6 10.3 - - + +
263G TYR* 3.4 45.8 - - - +
266G LEU* 3.9 15.0 - - + +
295G PHE* 5.0 3.1 - - + -
386G ASN 3.0 17.0 + - - +
387G LEU* 4.1 3.6 - - - +
389G GLY* 1.3 75.7 - - - +
391G ILE* 1.3 59.7 + - - +
393G THR* 3.3 1.4 + - - -
394G LYS* 2.9 24.4 + - - +
----------------------------------------------------------
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Residues in contact with ILE 391 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266G LEU* 4.4 10.5 - - + -
291G LEU* 4.3 10.1 - - + -
387G LEU* 2.9 44.9 + - + +
388G ARG* 4.1 2.5 - - - +
390G ALA* 1.3 74.0 - - - +
392G GLN* 1.3 62.0 + - - +
394G LYS* 3.2 7.1 + - + +
395G ILE* 2.9 47.2 + - + +
425G THR* 4.3 14.4 - - + +
428G LEU* 3.7 30.1 - - + -
610G LEU* 4.6 18.2 - - + -
----------------------------------------------------------
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Residues in contact with GLN 392 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388G ARG* 2.9 45.9 + - - +
389G GLY 3.8 3.6 - - - +
391G ILE* 1.3 76.2 - - - +
393G THR* 1.3 55.8 + - - +
395G ILE* 3.4 8.5 + - - +
396G TYR* 2.9 29.7 + - - +
421G VAL* 4.3 22.4 + - + +
425G THR* 4.3 11.5 - - + +
1200G LEU* 3.6 28.0 - - + +
1204G PHE* 5.5 1.7 - - - -
1227G LEU* 4.2 8.7 - - + +
1231G THR* 3.2 33.6 + - + +
1234G ASN* 5.1 3.5 - - - +
----------------------------------------------------------
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Residues in contact with THR 393 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259G ALA* 3.6 19.2 - - - +
260G LEU* 5.6 1.3 - - - -
263G TYR* 3.6 28.5 - - + -
389G GLY 2.7 19.3 + - - -
390G ALA 3.5 7.6 - - - -
391G ILE 3.2 0.2 - - - -
392G GLN* 1.3 75.3 - - - +
394G LYS* 1.3 58.7 + - - +
396G TYR* 3.3 9.0 + - + +
397G ASN* 2.9 44.4 + - - +
1227G LEU* 5.0 4.3 - - - +
1228G LEU* 4.3 13.4 - - + +
1231G THR* 5.2 1.9 + - - +
----------------------------------------------------------
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Residues in contact with LYS 394 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263G TYR* 3.4 30.1 + - + +
266G LEU* 4.0 12.8 - - + -
267G CYS* 4.9 7.9 - - - -
270G PHE* 4.3 39.0 - - + +
390G ALA 2.9 16.4 + - - +
391G ILE* 3.2 9.8 + - + +
393G THR* 1.3 74.5 - - - +
395G ILE* 1.3 60.8 + - + +
397G ASN* 3.2 3.4 + - + +
398G LYS* 2.9 29.3 + - + +
610G LEU* 6.2 5.2 - - + -
614G LEU* 6.0 8.5 - - + -
----------------------------------------------------------
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Residues in contact with ILE 395 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391G ILE* 2.9 36.2 + - + +
392G GLN* 3.7 6.1 - - - +
394G LYS* 1.3 75.5 - - + +
396G TYR* 1.3 57.6 + - - +
398G LYS* 3.2 5.2 + - - +
399G ILE* 3.0 28.8 + - + +
417G ILE* 5.1 1.8 - - + -
420G LEU* 4.8 10.1 - - + -
421G VAL* 3.8 35.9 - - + -
425G THR* 4.3 8.5 - - - +
610G LEU* 4.2 24.0 - - + -
613G PHE* 3.8 23.7 - - + -
1204G PHE* 4.0 14.1 - - + -
----------------------------------------------------------
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Residues in contact with TYR 396 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392G GLN 2.9 18.2 + - - +
393G THR* 3.4 9.4 - - + +
394G LYS 3.2 0.2 - - - -
395G ILE* 1.3 77.6 - - - +
397G ASN* 1.3 60.9 + - - +
399G ILE* 3.2 12.5 + - + +
400G MET* 2.9 54.0 + - + +
1203G HIS* 4.4 6.1 - + - -
1204G PHE* 4.9 12.8 - + + -
1207G THR* 3.6 23.7 - - + +
1220G GLU 3.7 3.3 + - - -
1223G PHE* 2.9 37.2 - - - +
1224G GLN* 3.0 41.1 + - + -
1227G LEU* 3.4 27.8 - - + -
----------------------------------------------------------
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Residues in contact with ASN 397 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263G TYR* 2.9 42.2 + - - +
393G THR* 2.9 31.1 + - - +
394G LYS* 3.8 3.8 - - + +
396G TYR* 1.3 75.6 - - - +
398G LYS* 1.3 60.8 + - - +
400G MET* 3.2 7.3 + - - +
401G HIS* 2.9 44.1 + - + -
1224G GLN* 3.2 30.8 + - - +
----------------------------------------------------------
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Residues in contact with LYS 398 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394G LYS* 2.9 16.2 + - + +
395G ILE* 3.4 9.6 - - - +
397G ASN* 1.3 73.9 - - - +
399G ILE* 1.3 63.8 + - - +
401G HIS* 3.1 20.2 + - + +
402G MET* 3.3 38.1 - - + +
613G PHE* 2.6 41.5 + - + +
614G LEU* 3.2 21.9 + - + +
615G SER 2.5 32.7 + - - -
----------------------------------------------------------
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Residues in contact with ILE 399 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395G ILE* 3.0 21.3 + - + +
396G TYR* 3.2 10.3 + - + +
398G LYS* 1.3 74.4 - - - +
400G MET* 1.3 73.0 + - + +
402G MET* 3.2 26.5 + - + +
417G ILE* 4.2 8.1 - - + -
613G PHE* 3.8 15.7 - - + -
1204G PHE* 3.6 38.1 - - + -
1207G THR* 4.8 5.4 - - + +
1208G VAL* 4.0 22.9 - - + -
1211G LEU* 3.5 31.9 - - + +
----------------------------------------------------------
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Residues in contact with MET 400 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396G TYR* 2.9 61.8 + - + +
397G ASN* 3.2 16.6 + - - +
399G ILE* 1.3 90.2 - - + +
401G HIS* 1.3 60.8 + - + +
1207G THR* 3.8 17.0 - - + -
1211G LEU* 4.1 11.0 - - + -
1214G ILE* 5.5 4.0 - - + -
1215G ARG* 2.6 28.1 + - - +
1220G GLU* 3.4 36.2 - - + +
1224G GLN* 4.6 6.5 - - - +
----------------------------------------------------------
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Residues in contact with HIS 401 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397G ASN* 2.9 35.3 + - + +
398G LYS* 3.1 16.8 + - + +
399G ILE 3.1 0.8 - - - -
400G MET* 1.3 83.0 + - + +
402G MET* 1.3 60.2 + - - +
403G SER* 3.1 16.7 + - - +
1215G ARG* 3.8 1.8 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il