Contacts of the helix formed by residues 355 - 401 (chain H) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 355 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323H ILE* 4.0 6.5 - - + +
326H HIS* 5.2 9.0 - - + -
327H LEU* 5.5 4.3 - - + -
354H ASN* 1.3 79.3 - - - +
356H TYR* 1.3 70.6 + - + +
357H VAL* 3.2 3.7 - - - +
358H LEU* 3.3 7.5 + - - +
359H ALA 3.3 14.2 + - - -
1268H ILE* 3.5 42.2 - - + +
1272H LEU* 5.5 4.7 - - + -
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Residues in contact with TYR 356 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
355H ALA* 1.3 78.0 - - + +
357H VAL* 1.3 60.8 + - - +
359H ALA* 3.0 9.1 + - + +
360H VAL* 2.9 36.7 + - + +
1265H ALA* 3.7 24.7 - - + -
1268H ILE* 3.6 37.7 - - + -
1269H SER* 3.0 32.8 + - - -
1272H LEU* 4.7 7.5 - - + +
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Residues in contact with VAL 357 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90H ALA* 4.1 28.5 - - + -
94H LEU* 6.2 4.0 - - + -
354H ASN* 3.3 41.7 - - - +
355H ALA 3.7 0.9 - - - +
356H TYR* 1.3 79.0 - - - +
358H LEU* 1.3 59.1 + - + +
360H VAL* 3.3 6.7 + - - +
361H LEU* 2.9 46.9 + - + +
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Residues in contact with LEU 358 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319H CYS* 3.8 21.5 - - + +
322H GLY* 3.6 37.2 - - - +
323H ILE* 3.7 16.2 - - + +
354H ASN* 3.3 40.6 - - - +
355H ALA 3.3 7.1 + - - +
356H TYR 3.2 0.6 - - - -
357H VAL* 1.3 79.5 - - + +
359H ALA* 1.3 57.8 + - - +
361H LEU* 3.8 12.3 - - + -
362H LEU* 2.8 30.1 + - - +
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Residues in contact with ALA 359 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323H ILE* 4.3 7.5 - - + +
355H ALA 3.3 6.9 + - - +
356H TYR* 3.0 17.8 + - + +
358H LEU* 1.3 80.1 - - - +
360H VAL* 1.3 57.4 + - + +
362H LEU* 3.3 8.7 + - - +
363H PHE* 2.8 27.7 + - - +
1260H VAL* 5.5 1.8 - - - +
1261H LEU* 4.1 14.6 - - + +
1264H ALA* 3.6 32.1 - - + -
1265H ALA* 5.1 1.8 - - + +
1268H ILE* 5.1 0.9 - - + -
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Residues in contact with VAL 360 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86H VAL* 3.6 30.7 - - + -
356H TYR* 2.9 23.7 + - + +
357H VAL* 3.9 6.3 - - - +
359H ALA* 1.3 73.2 - - + +
361H LEU* 1.3 63.5 + - + +
363H PHE* 3.1 12.4 + - + +
364H LEU* 3.0 33.4 + - + +
1261H LEU* 4.3 15.0 - - + -
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Residues in contact with LEU 361 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83H PHE* 3.9 32.3 - - + -
86H VAL* 5.9 1.8 - - + -
87H CYS* 4.1 18.8 - - - -
319H CYS* 4.9 5.8 - - - -
357H VAL* 2.9 36.5 + - + +
358H LEU* 3.9 13.5 - - + +
360H VAL* 1.3 77.0 - - + +
362H LEU* 1.3 57.7 + - - +
364H LEU* 3.4 9.0 + - + +
365H ALA* 2.9 29.9 + - - +
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Residues in contact with LEU 362 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312H LEU 6.0 0.2 - - - +
315H ALA 4.4 0.9 - - - +
316H GLY* 3.6 33.9 - - - +
319H CYS* 3.8 24.4 - - + -
320H ILE* 5.2 8.3 - - + -
323H ILE* 5.3 6.1 - - + -
358H LEU 2.8 19.7 + - - +
359H ALA* 3.4 9.2 - - - +
360H VAL 3.2 0.2 - - - -
361H LEU* 1.3 77.7 - - - +
363H PHE* 1.3 55.9 + - - +
365H ALA* 3.3 5.9 + - + +
366H LEU* 2.9 42.0 + - + +
1260H VAL* 3.9 25.8 - - + -
1264H ALA* 5.9 1.8 - - + -
1285H LEU* 5.6 8.1 - - + -
1289H LEU* 5.0 8.1 - - + -
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Residues in contact with PHE 363 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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359H ALA 2.8 13.6 + - - +
360H VAL* 3.3 17.3 - - + +
362H LEU* 1.3 76.7 - - - +
364H LEU* 1.3 72.5 + - + +
366H LEU* 3.3 7.9 + - - +
367H LEU* 3.0 53.2 + - + +
1254H TYR 5.1 0.9 - - - -
1257H ALA* 3.1 44.2 - - + -
1258H CYS* 3.7 13.5 - - + -
1260H VAL* 5.3 2.2 - - - -
1261H LEU* 3.6 32.8 - - + -
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Residues in contact with LEU 364 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83H PHE* 3.6 41.1 - - + +
86H VAL* 4.3 29.8 - - + -
360H VAL* 3.0 21.2 + - + +
361H LEU* 3.8 9.2 - - + +
363H PHE* 1.3 88.5 - - + +
365H ALA* 1.3 62.0 + - - +
367H LEU* 3.3 12.6 + - + +
368H LEU* 3.0 33.8 + - + +
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Residues in contact with ALA 365 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83H PHE* 5.9 0.4 - - - -
312H LEU* 3.7 38.2 - - + +
315H ALA* 4.3 12.3 - - + -
361H LEU 2.9 19.3 + - - +
362H LEU* 3.6 11.2 - - + +
363H PHE 3.3 0.4 - - - -
364H LEU* 1.3 78.6 - - - +
366H LEU* 1.3 57.7 + - + +
368H LEU* 3.5 1.9 + - - -
369H GLN* 2.9 30.7 + - - +
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Residues in contact with LEU 366 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312H LEU 5.3 2.5 - - - +
313H GLY* 5.9 0.2 - - - -
316H GLY* 5.9 2.0 - - - -
362H LEU* 2.9 28.6 + - + +
363H PHE* 3.3 4.7 + - - +
365H ALA* 1.3 74.6 - - - +
367H LEU* 1.3 60.7 + - - +
369H GLN* 3.6 10.2 - - - +
370H ARG* 2.9 67.4 + - + +
1256H GLY 5.7 0.4 - - - -
1257H ALA* 4.2 15.0 - - + -
1260H VAL* 3.6 43.5 - - + -
1289H LEU* 4.1 22.4 - - + -
1292H SER* 5.9 1.8 - - - +
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Residues in contact with LEU 367 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363H PHE* 3.0 51.7 + - + +
364H LEU* 3.3 14.6 + - + +
366H LEU* 1.3 76.2 - - - +
368H LEU* 1.3 59.4 + - + +
370H ARG* 3.5 4.3 + - + +
371H THR* 2.9 33.9 + - - -
1254H TYR* 3.5 37.3 - - + +
1257H ALA* 3.7 22.0 - - + -
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Residues in contact with LEU 368 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79H PHE* 5.9 12.8 - - + -
80H ILE* 6.2 3.8 - - + -
83H PHE* 5.5 11.7 - - + -
312H LEU* 3.6 21.8 - - + -
364H LEU* 3.0 27.2 + - + +
365H ALA* 5.5 1.1 - - - -
367H LEU* 1.3 77.8 - - + +
369H GLN* 1.3 52.8 + - - +
371H THR* 4.4 7.9 - - + -
372H PHE* 2.7 57.9 + - + +
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Residues in contact with GLN 369 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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309H ALA* 3.3 24.7 + - + +
310H ASP* 5.6 0.2 - - - +
312H LEU* 3.6 14.9 - - + +
313H GLY* 3.3 32.5 + - - -
365H ALA 2.9 18.4 + - - +
366H LEU* 3.6 13.5 - - - +
367H LEU 3.2 0.2 - - - -
368H LEU* 1.3 73.6 - - - +
370H ARG* 1.3 91.0 + - - +
372H PHE* 3.1 2.4 + - - +
373H LEU* 2.8 38.2 + - + +
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Residues in contact with ARG 370 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366H LEU* 2.9 42.8 + - + +
367H LEU* 3.9 4.9 - - + +
369H GLN* 1.3 111.0 + - - +
371H THR* 1.3 63.2 + - - +
373H LEU* 3.1 10.8 + - - +
374H GLN* 3.0 31.1 + - + +
1250H VAL* 5.7 1.1 - - - +
1253H GLU* 3.2 57.4 + - + +
1254H TYR* 5.5 5.2 - - + -
1257H ALA* 6.1 0.4 - - + -
1289H LEU* 4.2 8.9 + - - +
1292H SER* 3.7 22.7 + - - -
1293H ASN* 4.2 20.0 + - - +
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Residues in contact with THR 371 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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228H GLY* 4.1 29.3 + - - +
367H LEU 2.9 20.5 + - - -
368H LEU* 3.8 10.9 - - + +
370H ARG* 1.3 78.0 - - - +
372H PHE* 1.3 65.7 + - + +
374H GLN* 3.2 8.1 + - - +
375H ALA* 2.9 29.4 + - + +
1250H VAL* 5.5 2.3 - - - +
1254H TYR* 3.4 25.5 + - - +
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Residues in contact with PHE 372 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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305H PHE* 3.4 44.2 - + - +
308H LEU* 3.3 44.6 - - + -
309H ALA* 3.9 4.3 - - + -
312H LEU* 4.1 16.4 - - + -
368H LEU* 2.7 41.3 + - + +
369H GLN 3.7 3.4 - - - +
371H THR* 1.3 82.0 - - + +
373H LEU* 1.3 64.0 + - - +
375H ALA* 3.2 6.7 + - + +
376H SER* 3.0 20.4 + - - -
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Residues in contact with LEU 373 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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306H ARG* 3.9 25.8 - - + +
309H ALA* 3.9 21.5 - - + +
310H ASP* 5.7 1.6 - - - +
369H GLN* 2.8 24.5 + - + +
370H ARG* 3.1 11.9 + - - +
372H PHE* 1.3 72.5 - - - +
374H GLN* 1.3 73.6 + - - +
376H SER* 2.6 33.4 + - - +
377H TYR* 2.8 33.9 + - + +
444H GLN* 6.1 1.3 - - - +
1249H GLU* 5.8 0.2 - - - +
1253H GLU* 5.9 1.6 - - - +
2001H GBM 5.6 3.1 - - + -
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Residues in contact with GLN 374 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228H GLY 4.9 3.1 - - - +
230H TYR* 3.9 10.6 + - + +
370H ARG 3.0 19.0 + - - +
371H THR* 3.6 6.7 - - - +
373H LEU* 1.3 92.5 - - - +
375H ALA* 1.3 51.5 + - - +
377H TYR* 3.1 20.0 + - - +
378H TYR* 2.7 37.2 + - - +
1246H ARG* 3.4 14.9 + - - -
1249H GLU* 3.0 38.2 + - - +
1250H VAL* 3.4 35.2 - - + -
1253H GLU* 3.7 6.6 + - - +
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Residues in contact with ALA 375 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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227H LYS 5.5 8.3 - - - +
228H GLY* 6.2 1.1 - - - -
230H TYR* 5.2 0.7 - - - -
305H PHE* 3.2 32.5 - - + -
371H THR* 2.9 16.9 + - + +
372H PHE* 3.2 11.2 + - + +
374H GLN* 1.3 75.7 - - - +
376H SER* 1.3 63.7 + - - +
378H TYR* 3.3 6.6 + - - +
379H VAL* 3.1 30.5 + - + +
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Residues in contact with SER 376 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302H SER* 3.2 39.6 - - - +
305H PHE* 4.1 1.0 - - - +
306H ARG* 3.5 32.4 + - - -
372H PHE 3.0 12.7 + - - -
373H LEU* 2.6 27.4 + - - +
375H ALA* 1.3 76.7 - - - +
377H TYR* 1.3 63.1 + - - +
379H VAL 3.4 0.3 + - - -
380H ALA* 3.0 24.8 + - - +
436H PRO* 5.4 0.4 - - - +
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Residues in contact with TYR 377 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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306H ARG* 4.0 13.9 - - - -
373H LEU* 2.8 29.3 + - + +
374H GLN* 3.2 33.9 - - - +
376H SER* 1.3 83.3 + - - +
378H TYR* 1.3 57.3 + - - +
380H ALA* 3.4 3.5 + - - +
381H ILE* 2.9 34.2 + - - +
1246H ARG* 3.9 16.6 - - - -
1249H GLU* 4.5 6.1 - - - -
2001H GBM 2.8 105.9 - + + -
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Residues in contact with TYR 378 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217H PHE* 3.5 26.3 - + - -
219H GLN* 3.2 52.0 - - + +
220H PRO 4.9 0.9 - - - -
227H LYS 4.9 4.9 - - - -
230H TYR* 3.3 28.3 - + + +
298H ARG* 5.7 3.1 - - - -
374H GLN 2.7 13.8 + - - +
375H ALA* 4.0 5.2 - - - +
376H SER 3.3 0.2 - - - -
377H TYR* 1.3 73.9 - - - +
379H VAL* 1.3 66.3 + - + +
381H ILE* 4.0 5.2 - - + -
382H GLU* 2.8 49.7 + - + +
1239H LEU* 4.7 3.6 - - + -
1242H THR* 4.5 14.8 - - + -
1243H ALA* 5.7 3.8 - - + -
1246H ARG* 4.5 6.9 - - + +
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Residues in contact with VAL 379 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298H ARG* 3.2 55.6 - - + +
299H LEU* 4.8 0.7 - - - -
301H LEU* 4.7 16.2 - - + -
302H SER* 3.7 20.9 - - - +
305H PHE* 5.2 3.4 - - + -
375H ALA* 3.1 18.5 + - + +
378H TYR* 1.3 82.4 - - + +
380H ALA* 1.3 66.4 - - - +
381H ILE 3.2 1.1 - - - -
382H GLU* 3.4 5.2 + - - +
383H THR* 3.0 29.1 + - - +
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Residues in contact with ALA 380 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299H LEU* 5.1 4.3 - - - -
302H SER* 4.3 4.4 - - - -
306H ARG* 5.5 1.1 - - - +
376H SER 3.0 17.5 + - - +
377H TYR* 3.7 7.0 - - - +
379H VAL* 1.3 79.7 - - - +
381H ILE* 1.3 62.6 + - + +
383H THR* 3.3 5.8 + - - -
384H GLY* 3.0 17.7 + - - -
432H PHE 4.1 7.5 - - - +
433H PHE* 3.6 40.3 - - + +
436H PRO* 4.4 9.6 - - + -
2001H GBM 5.1 2.0 - - + -
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Residues in contact with ILE 381 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377H TYR 2.9 24.4 + - - +
378H TYR 4.0 4.3 - - - +
380H ALA* 1.3 76.3 - - - +
382H GLU* 1.3 59.0 + - - +
384H GLY* 2.8 4.3 + - - -
385H ILE* 2.8 44.0 + - + +
433H PHE* 3.4 39.6 - - + -
1239H LEU* 5.0 2.2 - - + -
1242H THR* 3.1 48.0 - - + +
1246H ARG* 5.3 0.7 - - - +
2001H GBM 3.9 30.1 - - + -
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Residues in contact with GLU 382 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217H PHE* 4.6 4.9 - - - -
220H PRO* 5.1 7.3 - - - +
257H MET* 5.1 14.8 - - + +
298H ARG* 2.9 36.8 + - + +
378H TYR* 2.8 52.6 + - + +
379H VAL* 3.4 7.6 + - - +
381H ILE* 1.3 77.4 - - - +
383H THR* 1.3 62.6 + - - +
385H ILE* 3.4 7.3 + - - +
386H ASN* 3.0 37.1 + - - +
1239H LEU* 4.4 11.7 - - + -
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Residues in contact with THR 383 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295H PHE* 4.0 24.6 - - + +
298H ARG* 3.7 22.6 - - - +
299H LEU* 4.4 9.4 + - + -
379H VAL* 3.0 20.1 + - - +
380H ALA* 3.5 6.7 - - - -
382H GLU* 1.3 72.6 - - - +
384H GLY* 1.3 67.7 + - - +
386H ASN* 3.9 2.4 - - - +
387H LEU* 2.9 33.5 + - + +
432H PHE* 3.4 33.4 - - + -
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Residues in contact with GLY 384 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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380H ALA 3.0 10.9 + - - -
381H ILE 2.8 8.3 + - - -
383H THR* 1.3 75.1 - - - +
385H ILE* 1.3 50.8 + - - -
387H LEU* 3.0 9.1 + - - +
388H ARG* 2.8 33.1 + - - +
429H MET* 3.9 15.0 - - - +
432H PHE* 4.4 14.3 - - - +
433H PHE* 4.0 13.0 - - - -
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Residues in contact with ILE 385 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
257H MET* 4.3 13.2 - - + -
381H ILE* 2.8 27.6 + - + +
382H GLU* 3.7 8.1 - - - +
384H GLY* 1.3 69.8 - - - +
386H ASN* 1.3 65.1 + - - +
388H ARG* 2.9 14.0 + - - +
389H GLY* 2.9 11.6 + - - -
429H MET* 3.4 24.7 - - + +
1235H ASN* 3.4 37.5 + - + +
1238H SER* 4.1 7.4 - - - -
1239H LEU* 3.4 51.8 - - + +
2001H GBM 5.7 0.4 - - + -
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Residues in contact with ASN 386 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
257H MET* 3.1 40.7 - - - +
262H ASN* 2.5 44.3 + - - +
265H ARG* 5.0 1.8 - - - +
295H PHE* 3.8 18.3 - - + -
382H GLU* 3.0 26.5 + - - +
383H THR* 5.0 0.6 - - - +
385H ILE* 1.3 78.8 - - - +
387H LEU* 1.3 57.9 + - - +
389H GLY* 3.4 1.1 + - - +
390H ALA* 3.0 31.0 + - - +
1235H ASN* 5.0 3.5 + - - +
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Residues in contact with LEU 387 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266H LEU* 5.0 2.5 - - + -
291H LEU* 3.4 32.8 - - + -
295H PHE* 3.4 35.0 - - + -
383H THR* 2.9 32.0 + - + +
384H GLY* 3.2 10.8 - - - +
386H ASN* 1.3 73.7 - - - +
388H ARG* 1.3 65.3 + - - +
390H ALA* 3.9 0.6 - - - -
391H ILE* 2.9 49.6 + - + +
428H LEU* 6.0 5.4 - - + -
429H MET* 6.3 0.9 - - - -
432H PHE* 3.8 27.4 - - + -
----------------------------------------------------------
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Residues in contact with ARG 388 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384H GLY 2.8 15.1 + - - +
385H ILE 2.9 5.6 + - - +
387H LEU* 1.3 73.3 - - - +
389H GLY* 1.3 62.8 + - - +
391H ILE* 3.9 0.5 - - - +
392H GLN* 2.9 50.5 + - - +
425H THR* 3.4 30.1 - - + +
426H ASN* 5.7 1.6 - - - +
429H MET* 3.4 42.7 - - + +
1231H THR* 5.7 0.2 - - - +
1234H ASN* 2.8 53.8 + - - +
1235H ASN* 2.6 31.5 + - - +
1238H SER* 3.9 7.1 + - - -
2001H GBM 5.3 1.4 - - - +
----------------------------------------------------------
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Residues in contact with GLY 389 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259H ALA* 3.9 11.9 - - - +
262H ASN* 5.9 0.4 - - - -
385H ILE 2.9 12.6 + - - -
386H ASN* 3.9 2.0 - - - -
388H ARG* 1.3 77.7 - - - +
390H ALA* 1.3 56.2 + - - +
392H GLN* 3.4 1.9 + - - +
393H THR* 2.7 33.6 + - - -
1231H THR* 3.6 24.3 - - - +
1235H ASN* 4.4 8.2 - - - +
----------------------------------------------------------
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Residues in contact with ALA 390 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259H ALA* 4.2 2.3 + - - +
262H ASN* 3.6 10.5 - - + +
263H TYR* 3.4 46.7 - - - +
266H LEU* 3.9 15.7 - - + +
295H PHE* 5.0 2.9 - - + -
386H ASN 3.0 18.5 + - - +
387H LEU* 4.1 3.4 - - - +
389H GLY* 1.3 75.6 - - - +
391H ILE* 1.3 58.8 + - - +
393H THR 3.3 0.9 + - - -
394H LYS* 2.9 24.4 + - - +
----------------------------------------------------------
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Residues in contact with ILE 391 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266H LEU* 4.4 10.5 - - + -
291H LEU* 4.3 9.6 - - + -
387H LEU* 2.9 46.5 + - + +
388H ARG* 4.1 2.2 - - - +
390H ALA* 1.3 73.9 - - - +
392H GLN* 1.3 59.9 + - - +
394H LYS* 3.2 7.6 + - + +
395H ILE* 2.9 46.9 + - + +
425H THR* 4.3 16.2 - - + +
428H LEU* 3.7 29.4 - - + -
610H LEU* 4.6 18.6 - - + -
----------------------------------------------------------
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Residues in contact with GLN 392 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388H ARG* 2.9 46.5 + - - +
389H GLY 3.8 2.9 - - - +
391H ILE* 1.3 77.1 - - - +
393H THR* 1.3 56.9 + - - +
395H ILE* 3.4 7.5 + - - +
396H TYR* 2.9 29.9 + - - +
421H VAL* 4.3 23.4 + - + +
425H THR* 4.3 10.4 - - + +
1200H LEU* 3.6 29.4 - - + +
1204H PHE* 5.5 1.7 - - - -
1227H LEU* 4.2 8.6 - - + +
1231H THR* 3.2 33.7 + - + +
1234H ASN* 5.1 3.5 - - - +
----------------------------------------------------------
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Residues in contact with THR 393 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259H ALA* 3.5 19.6 + - - +
260H LEU* 5.6 0.9 - - - -
263H TYR* 3.6 28.5 - - + -
389H GLY 2.7 19.4 + - - -
390H ALA 3.5 8.5 - - - -
392H GLN* 1.3 75.7 - - - +
394H LYS* 1.3 57.4 + - - +
396H TYR* 3.3 9.8 + - + +
397H ASN* 2.9 45.9 + - - +
1227H LEU* 5.0 4.0 - - - +
1228H LEU* 4.3 13.6 - - + +
1231H THR* 5.2 1.7 + - - +
----------------------------------------------------------
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Residues in contact with LYS 394 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263H TYR* 3.4 31.0 + - + +
266H LEU* 4.0 11.4 - - + -
267H CYS* 5.0 7.9 - - - -
270H PHE* 4.3 38.4 - - + +
390H ALA 2.9 16.6 + - - +
391H ILE* 3.2 9.2 + - + +
393H THR* 1.3 75.6 - - - +
395H ILE* 1.3 61.5 + - + +
397H ASN* 3.2 4.0 + - + +
398H LYS* 2.9 29.7 + - + +
610H LEU* 6.2 5.2 - - + -
614H LEU* 6.0 8.5 - - + -
----------------------------------------------------------
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Residues in contact with ILE 395 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391H ILE* 2.9 37.5 + - + +
392H GLN* 3.7 7.2 - - - +
394H LYS* 1.3 75.2 - - + +
396H TYR* 1.3 57.7 + - - +
398H LYS* 3.2 5.3 + - - +
399H ILE* 3.0 29.6 + - + +
417H ILE* 5.1 1.8 - - + -
420H LEU* 4.8 9.9 - - + -
421H VAL* 3.8 34.3 - - + -
425H THR* 4.3 8.3 - - - +
610H LEU* 4.2 24.2 - - + -
613H PHE* 3.8 23.3 - - + -
1204H PHE* 4.0 14.8 - - + -
----------------------------------------------------------
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Residues in contact with TYR 396 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392H GLN 2.9 18.2 + - - +
393H THR* 3.4 8.5 - - + +
395H ILE* 1.3 77.8 - - - +
397H ASN* 1.3 62.0 + - - +
399H ILE* 3.2 13.2 + - + +
400H MET* 2.9 54.1 + - + +
1203H HIS* 4.4 5.8 - + - -
1204H PHE* 4.9 12.8 - + + -
1207H THR* 3.6 24.1 - - + +
1220H GLU 3.7 3.3 + - - -
1223H PHE* 2.9 37.5 - - - +
1224H GLN* 3.0 40.9 + - + -
1227H LEU* 3.4 27.6 - - + -
----------------------------------------------------------
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Residues in contact with ASN 397 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263H TYR* 2.9 41.3 + - - +
393H THR* 2.9 30.7 + - - +
394H LYS* 3.8 3.8 - - + +
396H TYR* 1.3 76.0 - - - +
398H LYS* 1.3 60.3 - - - +
400H MET* 3.2 6.8 + - - +
401H HIS* 2.9 45.4 + - + +
1224H GLN* 3.2 31.0 + - - +
----------------------------------------------------------
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Residues in contact with LYS 398 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394H LYS* 2.9 15.2 + - + +
395H ILE* 3.2 9.8 + - - +
397H ASN* 1.3 75.7 - - - +
399H ILE* 1.3 64.1 + - - +
401H HIS* 3.1 20.3 + - + -
402H MET* 3.3 36.7 - - + +
613H PHE* 2.6 43.4 + - + +
614H LEU* 3.2 21.1 + - + +
615H SER 2.5 33.3 + - - -
----------------------------------------------------------
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Residues in contact with ILE 399 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395H ILE* 3.0 21.5 + - + +
396H TYR* 3.4 10.1 - - + +
398H LYS* 1.3 75.1 - - - +
400H MET* 1.3 71.5 + - + +
402H MET* 3.2 25.9 + - + +
417H ILE* 4.2 9.0 - - + -
613H PHE* 3.8 15.3 - - + -
1204H PHE* 3.6 37.5 - - + -
1207H THR* 4.8 5.6 - - + +
1208H VAL* 4.0 24.2 - - + -
1211H LEU* 3.5 30.7 - - + +
1215H ARG* 3.8 0.2 + - - -
----------------------------------------------------------
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Residues in contact with MET 400 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396H TYR* 2.9 58.9 + - + +
397H ASN* 3.2 17.0 + - - +
399H ILE* 1.3 91.2 - - + +
401H HIS* 1.3 60.6 + - + +
1207H THR* 3.8 16.4 - - + -
1211H LEU* 4.1 11.9 - - + -
1214H ILE* 5.5 4.5 - - + -
1215H ARG* 2.6 27.2 + - - +
1220H GLU* 3.4 37.5 - - + +
1224H GLN* 4.6 7.2 - - - +
----------------------------------------------------------
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Residues in contact with HIS 401 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397H ASN* 2.9 35.1 + - + +
398H LYS* 3.1 18.2 + - + +
399H ILE 3.1 0.8 - - - -
400H MET* 1.3 82.7 + - + +
402H MET* 1.3 60.6 + - - +
403H SER* 3.1 16.9 + - - +
1215H ARG* 3.8 2.0 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il