Contacts of the helix formed by residues 459 - 505 (chain F) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 459 (chain F).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456F LEU* 4.0 18.9 + - - +
457F GLY 3.3 1.6 - - - -
458F VAL* 1.3 81.4 - - - +
460F ALA* 1.3 61.9 + - - +
461F LEU 3.2 0.9 - - - -
462F ILE* 3.2 24.2 + - - +
463F GLY 3.9 2.4 + - - -
558F THR* 3.5 32.9 - - - -
561F GLY 5.0 1.3 - - - -
562F HIS* 3.7 22.4 - - - -
583F PHE* 5.9 0.5 - - - -
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Residues in contact with ALA 460 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449F VAL* 4.8 5.3 - - + +
452F LEU* 3.7 52.7 - - + +
453F TYR* 3.9 10.1 - - + +
456F LEU* 4.3 4.2 - - - +
457F GLY 3.4 14.4 + - - +
458F VAL 3.2 1.2 - - - -
459F SER* 1.3 77.5 - - - +
461F LEU* 1.3 57.2 + - - +
462F ILE 3.3 0.5 + - - -
463F GLY 3.4 2.1 + - - -
464F ALA* 3.0 26.7 + - - +
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Residues in contact with LEU 461 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458F VAL* 3.4 12.6 + - + +
459F SER 3.2 1.0 - - - -
460F ALA* 1.3 76.5 - - - +
462F ILE* 1.3 57.7 + - - +
464F ALA* 3.6 10.3 - - + +
465F ALA* 2.8 28.6 + - - +
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Residues in contact with ILE 462 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458F VAL 4.5 1.2 + - - -
459F SER* 3.2 17.7 + - - +
460F ALA 3.2 0.6 - - - -
461F LEU* 1.3 77.4 - - - +
463F GLY* 1.3 59.0 + - - +
465F ALA* 3.0 9.9 + - - +
466F VAL* 2.9 24.7 + - - +
554F ALA* 5.5 1.3 - - - -
557F ILE* 4.5 9.4 - - + +
558F THR* 4.0 22.7 - - - +
561F GLY* 6.4 0.4 - - - -
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Residues in contact with GLY 463 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452F LEU* 5.3 2.9 - - - -
459F SER 3.9 3.2 + - - -
460F ALA 3.4 5.1 + - - -
462F ILE* 1.3 75.7 - - - +
464F ALA* 1.3 59.1 + - - +
466F VAL* 3.2 11.1 + - - +
467F ILE* 3.0 29.3 + - - +
554F ALA* 4.6 15.3 - - - +
558F THR* 4.7 3.0 - - - -
583F PHE* 4.7 18.6 - - - -
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Residues in contact with ALA 464 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449F VAL* 5.0 20.0 - - + -
452F LEU* 5.0 1.9 - - + +
460F ALA 3.0 17.9 + - - +
461F LEU* 3.6 11.4 - - - +
462F ILE 3.2 0.2 - - - -
463F GLY* 1.3 77.0 - - - +
465F ALA* 1.3 56.4 + - - +
467F ILE* 3.4 5.3 + - - +
468F ILE* 3.0 30.8 + - - +
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Residues in contact with ALA 465 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
461F LEU 2.8 15.3 + - - +
462F ILE* 3.0 12.1 + - - +
464F ALA* 1.3 76.7 - - - +
466F VAL* 1.3 57.8 + - - +
468F ILE* 3.5 5.5 + - - +
469F LEU* 2.9 31.0 + - - +
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Residues in contact with VAL 466 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462F ILE 2.9 12.3 + - - +
463F GLY* 3.2 14.1 + - - +
465F ALA* 1.3 77.2 - - - +
467F ILE* 1.3 57.6 + - - +
469F LEU* 3.3 7.8 + - - +
470F LEU* 2.9 25.2 + - - +
550F ILE* 4.5 18.9 - - + +
553F ALA* 5.4 2.2 - - + -
554F ALA* 4.0 25.8 - - + +
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Residues in contact with ILE 467 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445F ILE* 6.5 1.1 - - + -
463F GLY 3.0 14.5 + - - +
464F ALA* 4.2 3.4 - - - +
466F VAL* 1.3 73.9 - - - +
468F ILE* 1.3 62.3 + - - +
470F LEU* 3.0 20.9 + - - +
471F ALA* 3.1 17.3 + - - +
550F ILE* 5.5 2.2 - - + -
586F LEU* 5.4 1.6 - - + +
590F LEU* 3.6 31.9 - - + +
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Residues in contact with ILE 468 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464F ALA 3.0 18.3 + - - +
465F ALA* 3.9 6.5 - - - +
467F ILE* 1.3 76.1 - - - +
469F LEU* 1.3 60.7 + - - +
471F ALA* 5.6 0.9 - - - -
472F PRO* 3.2 24.9 - - - +
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Residues in contact with LEU 469 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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465F ALA 2.9 19.3 + - - +
466F VAL* 3.6 7.0 - - - +
468F ILE* 1.3 75.0 - - - +
470F LEU* 1.3 63.5 + - - +
472F PRO* 4.4 2.4 - - - +
473F VAL* 3.3 25.1 + - - +
546F MET* 6.0 0.3 - - - +
550F ILE* 5.7 3.1 - - + -
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Residues in contact with LEU 470 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466F VAL 2.9 14.1 + - - +
467F ILE* 3.0 11.4 + - - +
469F LEU* 1.3 78.9 - - - +
471F ALA* 1.3 66.9 + - - +
473F VAL* 3.3 18.5 + - - +
474F GLN* 3.4 37.2 + - + +
546F MET* 4.4 17.9 - - + +
547F ASN* 5.0 1.8 - - - +
550F ILE* 3.7 39.9 - - + -
587F VAL* 4.9 11.7 - - + +
590F LEU* 3.7 32.3 - - + -
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Residues in contact with ALA 471 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467F ILE 3.1 11.0 + - - +
468F ILE* 4.9 1.1 - - - +
470F LEU* 1.3 81.1 - - - +
472F PRO* 1.3 69.4 - - + +
474F GLN* 3.0 18.2 + - - +
475F TYR* 3.1 10.1 + - - +
590F LEU* 4.6 20.2 - - + +
593F LEU* 5.6 6.7 - - + -
594F SER* 3.4 14.3 + - - +
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Residues in contact with PRO 472 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468F ILE 3.2 24.2 - - - +
469F LEU* 4.4 3.4 - - - +
470F LEU 3.9 0.7 - - - -
471F ALA* 1.3 84.7 - - + +
473F VAL* 1.3 62.2 + - + +
475F TYR* 3.4 16.2 - - + +
476F PHE* 2.8 30.1 + - - +
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Residues in contact with VAL 473 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469F LEU 3.3 18.4 - - - +
470F LEU* 3.3 10.5 + - - +
471F ALA 3.2 0.4 - - - -
472F PRO* 1.3 77.3 - - + +
474F GLN* 1.3 59.7 + - + +
476F PHE* 3.2 6.8 + - + +
477F VAL* 2.9 40.8 + - + +
542F ILE* 5.7 1.1 - - + -
546F MET* 3.7 42.6 - - + -
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Residues in contact with GLN 474 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470F LEU* 3.4 49.7 - - + +
471F ALA* 3.0 3.6 + - - +
473F VAL* 1.3 80.4 - - + +
475F TYR* 1.3 55.8 + - - +
477F VAL* 3.8 4.8 - - - +
478F ALA* 2.9 31.0 + - - +
543F SER* 5.9 0.9 - - - -
546F MET* 5.4 4.9 - - + -
547F ASN* 3.5 19.6 + - - +
587F VAL* 6.3 0.2 - - - +
590F LEU 3.1 14.0 - - - +
591F PHE* 3.5 22.2 - - + +
594F SER* 2.5 38.6 + - - +
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Residues in contact with TYR 475 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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471F ALA 3.1 7.4 + - - +
472F PRO* 3.4 21.5 - - + +
474F GLN* 1.3 77.6 - - - +
476F PHE* 1.3 58.9 + - + +
478F ALA* 3.3 7.0 + - + +
479F THR* 3.0 45.4 + - - -
594F SER* 4.2 13.4 + - - +
597F VAL* 3.9 31.6 - - + -
598F ARG* 5.2 9.4 - - + -
601F VAL* 5.2 9.5 - - + +
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Residues in contact with PHE 476 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
472F PRO 2.8 18.2 + - - +
473F VAL* 3.5 7.6 - - + +
475F TYR* 1.3 79.6 - - + +
477F VAL* 1.3 73.3 + - + +
479F THR* 3.2 11.6 + - + -
480F LYS* 3.1 34.6 + - + +
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Residues in contact with VAL 477 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473F VAL* 2.9 30.3 + - + +
474F GLN* 4.0 4.9 - - - +
476F PHE* 1.3 85.6 - - + +
478F ALA* 1.3 58.4 + - - +
480F LYS* 3.4 5.8 + - + +
481F LEU* 2.8 30.4 + - + +
539F TYR* 3.6 24.7 - - + +
542F ILE* 3.7 23.8 - - + -
543F SER* 3.2 26.9 - - - +
546F MET* 6.1 0.7 - - + -
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Residues in contact with ALA 478 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474F GLN 2.9 18.5 + - - +
475F TYR* 3.5 9.0 - - + +
476F PHE 3.2 0.2 - - - -
477F VAL* 1.3 77.4 - - - +
479F THR* 1.3 56.2 + - - +
481F LEU* 3.3 10.2 + - - +
482F SER* 2.9 29.5 + - - -
594F SER* 6.0 4.3 - - - +
598F ARG* 3.4 39.3 + - + +
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Residues in contact with THR 479 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
475F TYR* 3.0 31.2 + - - -
476F PHE* 3.2 14.6 + - + -
478F ALA* 1.3 75.7 - - - +
480F LYS* 1.3 63.3 + - - +
482F SER* 2.5 27.5 + - - +
483F GLN* 3.1 8.0 + - + +
486F ARG* 5.3 0.3 + - - -
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Residues in contact with LYS 480 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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476F PHE* 3.1 24.9 + - + +
477F VAL* 4.1 5.4 - - - +
479F THR* 1.3 80.0 - - + +
481F LEU* 1.3 57.0 + - - +
483F GLN* 3.4 9.7 + - + +
484F ALA* 3.0 28.7 + - + +
535F ALA* 5.9 9.9 - - - +
538F VAL* 6.2 4.0 - - - -
539F TYR* 5.5 10.3 - - + -
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Residues in contact with LEU 481 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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477F VAL* 2.8 20.2 + - + +
478F ALA* 3.3 8.1 - - - +
479F THR 3.2 0.2 - - - -
480F LYS* 1.3 76.2 - - - +
482F SER* 1.3 57.5 + - - +
484F ALA* 3.3 6.7 + - + -
485F GLN* 2.8 54.3 + - + +
536F PHE* 5.2 14.6 - - + +
539F TYR* 4.7 20.5 - - + +
540F THR* 5.9 0.9 - - - +
598F ARG* 4.5 17.0 - - - +
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Residues in contact with SER 482 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478F ALA 2.9 11.9 + - - -
479F THR* 2.5 26.5 + - - +
481F LEU* 1.3 73.4 - - - +
483F GLN* 1.3 65.6 + - - +
485F GLN* 3.2 12.5 + - - +
486F ARG* 3.0 43.7 + - - +
598F ARG* 5.8 7.2 - - - -
602F LYS* 6.6 0.2 - - - -
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Residues in contact with GLN 483 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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479F THR 3.1 7.9 + - - +
480F LYS* 3.5 15.3 - - + +
482F SER* 1.3 82.2 + - - +
484F ALA* 1.3 62.7 + - - +
486F ARG* 2.7 40.7 + - - +
487F THR* 3.1 34.2 + - - +
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Residues in contact with ALA 484 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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480F LYS* 3.0 19.1 + - + +
481F LEU* 3.3 8.5 + - + +
483F GLN* 1.3 73.6 - - - +
485F GLN* 1.3 55.6 + - - +
487F THR* 3.7 9.1 - - - -
488F THR* 2.4 40.3 + - - -
532F SER* 4.7 5.4 - - - +
535F ALA* 4.1 27.4 - - + +
536F PHE* 4.9 7.2 - - + +
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Residues in contact with GLN 485 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481F LEU* 2.8 44.9 + - + +
482F SER* 3.2 15.9 + - - +
484F ALA* 1.3 77.0 - - - +
486F ARG* 1.3 58.0 + - + +
488F THR* 3.2 8.0 + - - -
489F LEU* 2.9 42.7 + - + +
536F PHE* 6.2 1.2 - - - +
1134F GLN* 3.6 26.2 + - - +
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Residues in contact with ARG 486 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
479F THR 5.3 0.4 + - - -
482F SER* 3.0 32.7 + - - +
483F GLN* 2.7 45.8 + - - +
485F GLN* 1.3 76.2 - - + +
487F THR* 1.3 62.6 + - - +
489F LEU* 3.3 14.8 + - + +
490F GLU* 3.0 35.2 + - - +
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Residues in contact with THR 487 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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483F GLN* 3.1 26.6 + - - +
484F ALA* 3.7 11.6 - - - -
485F GLN 3.3 0.2 - - - -
486F ARG* 1.3 76.6 - - - +
488F THR* 1.3 60.8 + - - +
490F GLU* 3.2 16.1 + - - +
491F HIS* 3.1 45.4 + - + +
532F SER* 4.3 11.7 - - - -
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Residues in contact with THR 488 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484F ALA* 2.4 28.5 + - - +
485F GLN* 3.6 10.2 - - - +
487F THR* 1.3 75.9 - - - +
489F LEU* 1.3 58.0 + - - +
491F HIS* 3.5 3.3 + - + +
492F SER* 2.9 35.9 + - - -
529F GLU* 5.3 8.1 - - + +
532F SER* 3.3 30.2 + - - -
533F LEU* 5.5 2.2 - - + +
536F PHE* 5.9 1.0 - - - +
1130F ASN* 6.1 1.1 - - - +
1134F GLN* 4.1 22.4 + - - +
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Residues in contact with LEU 489 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
485F GLN* 2.9 28.7 + - + +
486F ARG* 3.6 15.7 - - + +
488F THR* 1.3 75.7 - - - +
490F GLU* 1.3 60.7 + - + +
492F SER* 2.8 22.7 + - - +
493F ASN* 2.9 19.6 + - - +
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Residues in contact with GLU 490 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486F ARG* 3.0 22.2 + - + +
487F THR* 3.2 15.1 + - - +
489F LEU* 1.3 77.4 - - + +
491F HIS* 1.3 69.3 + - + +
493F ASN* 3.4 5.3 + - - +
494F GLU* 3.1 22.9 + - - +
----------------------------------------------------------
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Residues in contact with HIS 491 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
487F THR* 3.1 37.7 + - + +
488F THR* 4.0 4.5 - - - +
490F GLU* 1.3 83.4 + - + +
492F SER* 1.3 57.1 + - - +
494F GLU* 3.4 8.1 + - + +
495F ARG* 3.0 29.2 + - - +
525F THR* 4.7 6.7 - - - +
528F LYS* 2.9 48.1 + - + +
529F GLU* 4.0 18.9 - - + +
531F THR* 5.4 2.5 - - - -
532F SER* 4.3 5.3 - - - -
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Residues in contact with SER 492 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488F THR* 2.9 20.7 + - - -
489F LEU* 2.8 31.4 + - - +
491F HIS* 1.3 75.2 - - - +
493F ASN* 1.3 59.1 + - - +
495F ARG* 3.9 4.9 - - - +
496F LEU* 2.9 32.9 + - - +
529F GLU* 5.8 2.0 - - - +
1130F ASN* 4.8 16.2 - - - -
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Residues in contact with ASN 493 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
489F LEU 2.9 17.6 + - - +
490F GLU* 3.7 5.6 - - - +
492F SER* 1.3 76.7 + - - +
494F GLU* 1.3 61.6 + - - +
496F LEU* 4.2 3.5 - - - +
497F LYS* 3.0 28.6 + - - +
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Residues in contact with GLU 494 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
490F GLU 3.1 13.3 + - - +
491F HIS* 3.5 12.3 - - + +
492F SER 3.3 0.2 - - - -
493F ASN* 1.3 76.8 - - - +
495F ARG* 1.3 62.5 + - - +
497F LYS* 4.0 2.7 - - - +
498F GLN* 3.0 27.1 + - - +
525F THR* 5.2 8.1 - - - -
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Residues in contact with ARG 495 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491F HIS 3.0 18.1 + - - +
492F SER* 3.9 5.4 - - - +
494F GLU* 1.3 77.2 - - - +
496F LEU* 1.3 58.7 + - - +
498F GLN* 3.7 4.3 - - - +
499F THR* 2.8 30.4 + - - -
522F VAL* 5.8 2.2 - - - +
525F THR* 4.2 24.0 - - - +
526F ARG* 5.4 2.2 - - - +
529F GLU* 6.2 2.2 - - + -
1125F PHE* 4.2 15.3 - - + -
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Residues in contact with LEU 496 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
492F SER 2.9 18.8 + - - +
493F ASN* 4.2 3.6 - - - +
495F ARG* 1.3 77.4 - - - +
497F LYS* 1.3 58.0 + - - +
499F THR* 3.5 1.4 - - - -
500F ASN* 2.9 28.4 + - - +
1122F LEU* 4.2 9.5 - - + +
1125F PHE* 3.8 23.1 - - + -
1126F SER* 5.3 10.3 - - - +
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Residues in contact with LYS 497 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
493F ASN 3.0 18.6 + - - +
494F GLU* 4.0 2.9 - - - +
496F LEU* 1.3 74.5 - - - +
498F GLN* 1.3 64.7 + - - +
500F ASN* 3.2 8.4 + - - +
501F GLU* 3.0 22.2 + - - +
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Residues in contact with GLN 498 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
494F GLU 3.0 19.1 + - - +
495F ARG* 3.9 4.5 - - - +
497F LYS* 1.3 75.6 - - - +
499F THR* 1.3 57.2 + - - +
501F GLU* 3.3 7.9 + - - +
502F MET* 2.9 29.6 + - - +
521F ARG* 6.2 4.7 - - + -
525F THR* 6.3 1.3 - - - -
1433F SER* 6.4 1.3 - - - -
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Residues in contact with THR 499 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495F ARG 2.8 19.5 + - - -
496F LEU 3.5 5.4 - - - -
497F LYS 3.2 0.2 - - - -
498F GLN* 1.3 77.6 - - - +
500F ASN* 1.3 57.4 + - - +
502F MET* 3.3 6.1 + - - +
503F LEU* 2.8 32.1 + - - +
1122F LEU* 4.4 6.5 - - - -
1125F PHE* 3.9 28.7 - - - -
----------------------------------------------------------
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Residues in contact with ASN 500 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
496F LEU 2.9 14.4 + - - +
497F LYS* 3.5 10.8 - - - +
499F THR* 1.3 76.0 - - - +
501F GLU* 1.3 61.7 + - - +
503F LEU* 3.4 5.0 + - - +
504F ARG* 3.0 27.2 + - - +
1122F LEU* 4.2 23.0 - - + +
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Residues in contact with GLU 501 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
497F LYS 3.0 12.7 + - - +
498F GLN* 3.7 10.1 - - - +
500F ASN* 1.3 76.1 - - - +
502F MET* 1.3 62.2 + - - +
504F ARG* 3.7 3.6 + - - +
505F GLY* 3.2 19.4 + - - -
1432F PHE* 5.9 2.5 - - - -
1433F SER* 4.9 21.8 - - - +
1478F GLY* 6.0 2.9 - - - -
----------------------------------------------------------
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Residues in contact with MET 502 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498F GLN 2.9 17.4 + - - +
499F THR* 3.8 7.2 - - - +
501F GLU* 1.3 77.9 - - - +
503F LEU* 1.3 56.6 + - - +
505F GLY 3.4 2.4 + - - -
506F MET* 3.0 30.2 + - - +
509F LEU* 5.6 1.0 - - - +
518F PHE* 4.7 20.6 - - + +
----------------------------------------------------------
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Residues in contact with LEU 503 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499F THR 2.8 18.1 + - - +
500F ASN* 4.0 4.7 - - - +
502F MET* 1.3 77.6 - - - +
504F ARG* 1.3 62.1 + - - +
506F MET* 3.3 19.7 + - - +
1113F PHE* 5.9 0.9 - - - +
1118F LEU* 3.9 32.0 - - + +
1121F ILE* 6.0 7.2 - - + -
1122F LEU* 6.2 4.3 - - + -
----------------------------------------------------------
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Residues in contact with ARG 504 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
500F ASN 3.0 18.2 + - - +
501F GLU* 4.2 3.8 - - - +
503F LEU* 1.3 78.4 - - - +
505F GLY* 1.3 57.7 + - - +
506F MET 3.2 2.7 + - - -
507F LYS* 4.7 4.7 + - - +
1118F LEU* 4.1 17.1 - - + +
1430F VAL* 5.5 1.3 - - - +
----------------------------------------------------------
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Residues in contact with GLY 505 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501F GLU 3.2 16.0 + - - -
502F MET* 3.4 4.7 - - - -
504F ARG* 1.3 75.2 - - - +
506F MET* 1.3 62.7 + - - +
507F LYS* 3.2 3.1 - - - -
508F LEU* 3.2 10.2 + - - +
509F LEU* 3.1 20.5 + - - +
1430F VAL* 4.6 19.3 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il