Contacts of the helix formed by residues 459 - 505 (chain G) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 459 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456G LEU* 4.0 19.4 + - - +
457G GLY 3.3 1.4 - - - -
458G VAL* 1.3 80.8 - - - +
460G ALA* 1.3 63.3 + - - +
461G LEU 3.2 0.4 - - - -
462G ILE* 3.2 22.6 + - - +
463G GLY 3.9 2.8 + - - -
558G THR* 3.5 33.0 - - - -
561G GLY 5.0 1.3 - - - -
562G HIS* 3.7 23.3 - - - -
583G PHE* 5.9 0.3 - - - -
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Residues in contact with ALA 460 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449G VAL* 4.8 6.2 - - + +
452G LEU* 3.7 51.6 - - + +
453G TYR* 3.9 9.9 - - + +
456G LEU* 4.3 4.2 - - - +
457G GLY 3.4 14.4 + - - +
458G VAL 3.2 1.0 - - - -
459G SER* 1.3 79.3 - - - +
461G LEU* 1.3 57.8 + - - +
462G ILE 3.3 0.2 + - - -
463G GLY 3.4 2.1 + - - -
464G ALA* 3.0 26.8 + - - +
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Residues in contact with LEU 461 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458G VAL* 3.4 11.9 + - + +
459G SER 3.2 0.8 - - - -
460G ALA* 1.3 77.4 - - - +
462G ILE* 1.3 57.7 - - - +
464G ALA* 3.6 10.8 - - + +
465G ALA* 2.8 29.1 + - - +
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Residues in contact with ILE 462 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458G VAL 4.5 0.8 + - - -
459G SER* 3.2 17.3 + - - +
460G ALA 3.2 0.6 - - - -
461G LEU* 1.3 77.5 - - - +
463G GLY* 1.3 58.1 + - - +
465G ALA* 3.0 9.7 + - - +
466G VAL* 2.9 25.0 + - - +
554G ALA* 5.4 1.1 - - - +
557G ILE* 4.5 8.7 - - + +
558G THR* 4.0 22.9 - - - +
561G GLY* 6.4 0.4 - - - -
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Residues in contact with GLY 463 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452G LEU* 5.3 2.2 - - - -
459G SER 3.9 3.2 + - - -
460G ALA 3.4 4.9 + - - -
462G ILE* 1.3 76.0 - - - +
464G ALA* 1.3 60.6 + - - +
466G VAL* 3.2 10.3 + - - +
467G ILE* 3.0 29.1 + - - +
554G ALA* 4.6 15.4 - - - +
558G THR* 4.7 2.6 - - - -
583G PHE* 4.7 18.3 - - - -
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Residues in contact with ALA 464 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449G VAL* 5.0 20.6 - - + -
452G LEU* 5.0 2.5 - - + +
460G ALA 3.0 17.5 + - - +
461G LEU* 3.6 12.1 - - + +
463G GLY* 1.3 77.4 - - - +
465G ALA* 1.3 56.9 + - - +
467G ILE* 3.4 4.3 + - - +
468G ILE* 3.0 31.1 + - - +
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Residues in contact with ALA 465 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
461G LEU 2.8 15.4 + - - +
462G ILE* 3.0 11.0 + - - +
464G ALA* 1.3 75.9 - - - +
466G VAL* 1.3 57.6 + - - +
468G ILE* 3.5 6.0 + - - +
469G LEU* 2.9 30.8 + - - +
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Residues in contact with VAL 466 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462G ILE 2.9 12.1 + - - +
463G GLY* 3.2 14.3 + - - +
465G ALA* 1.3 78.1 - - - +
467G ILE* 1.3 57.1 + - - +
469G LEU* 3.3 7.6 + - - +
470G LEU* 2.9 25.7 + - - +
550G ILE* 4.5 19.0 - - + +
553G ALA* 5.4 2.7 - - + -
554G ALA* 4.0 25.8 - - + +
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Residues in contact with ILE 467 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445G ILE* 6.5 1.6 - - + -
463G GLY 3.0 14.5 + - - +
464G ALA* 4.2 5.2 - - - +
466G VAL* 1.3 75.0 - - - +
468G ILE* 1.3 62.2 + - - +
470G LEU* 3.0 21.0 + - - +
471G ALA* 3.1 17.7 + - - +
550G ILE* 5.5 2.2 - - + -
586G LEU* 5.4 1.8 - - + +
590G LEU* 3.6 30.4 - - + +
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Residues in contact with ILE 468 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464G ALA 3.0 16.9 + - - +
465G ALA* 3.9 6.7 - - - +
467G ILE* 1.3 76.0 - - - +
469G LEU* 1.3 61.6 + - - +
471G ALA* 5.6 0.9 - - - -
472G PRO* 3.2 24.4 - - - +
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Residues in contact with LEU 469 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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465G ALA 2.9 18.5 + - - +
466G VAL* 3.6 6.5 - - - +
468G ILE* 1.3 75.4 - - - +
470G LEU* 1.3 64.8 + - - +
472G PRO* 4.4 2.7 - - - +
473G VAL* 3.3 25.1 + - - +
546G MET* 6.0 0.3 - - - +
550G ILE* 5.7 3.8 - - + -
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Residues in contact with LEU 470 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466G VAL 2.9 13.5 + - - +
467G ILE* 3.0 11.6 + - - +
469G LEU* 1.3 79.4 - - - +
471G ALA* 1.3 64.8 + - - +
473G VAL* 3.3 18.3 + - - +
474G GLN* 3.4 36.8 + - + +
546G MET* 4.4 18.4 - - + +
547G ASN* 5.0 1.6 - - - +
550G ILE* 3.7 40.4 - - + -
587G VAL* 4.9 11.4 - - + +
590G LEU* 3.7 33.2 - - + -
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Residues in contact with ALA 471 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467G ILE 3.1 10.3 + - - +
468G ILE* 4.9 1.1 - - - +
470G LEU* 1.3 81.1 - - - +
472G PRO* 1.3 69.4 - - + +
474G GLN* 3.0 18.0 + - - +
475G TYR* 3.1 9.7 + - - +
590G LEU* 4.6 20.2 - - + +
593G LEU* 5.6 8.1 - - + -
594G SER* 3.4 14.0 + - - +
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Residues in contact with PRO 472 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468G ILE 3.2 25.4 - - - +
469G LEU* 4.4 2.9 - - - +
470G LEU 3.9 0.9 - - - -
471G ALA* 1.3 84.0 - - + +
473G VAL* 1.3 62.3 + - + +
474G GLN 3.3 0.2 - - - -
475G TYR* 3.4 16.3 - - + +
476G PHE* 2.8 29.5 + - - +
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Residues in contact with VAL 473 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469G LEU 3.3 19.1 - - - +
470G LEU* 3.3 9.8 + - - +
471G ALA 3.2 0.6 - - - -
472G PRO* 1.3 76.7 - - + +
474G GLN* 1.3 61.3 + - - +
476G PHE* 3.2 7.1 + - + +
477G VAL* 2.9 39.1 + - + +
542G ILE* 5.7 1.1 - - + -
546G MET* 3.7 42.4 - - + -
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Residues in contact with GLN 474 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470G LEU* 3.4 48.6 - - + +
471G ALA* 3.0 4.1 + - - +
473G VAL* 1.3 79.9 - - + +
475G TYR* 1.3 57.3 + - - +
477G VAL* 3.4 4.9 + - - +
478G ALA* 2.9 31.1 + - - +
543G SER* 5.9 1.1 - - - -
546G MET* 5.4 4.9 - - + -
547G ASN* 3.5 19.9 + - - +
590G LEU 3.1 13.5 - - - +
591G PHE* 3.5 21.8 - - + +
594G SER* 2.5 39.3 + - - +
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Residues in contact with TYR 475 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
471G ALA 3.1 6.8 + - - +
472G PRO* 3.4 22.0 - - + +
474G GLN* 1.3 76.4 - - - +
476G PHE* 1.3 59.2 + - + +
478G ALA* 3.3 8.4 + - + +
479G THR* 3.0 41.7 + - - -
594G SER* 4.2 13.6 + - - +
597G VAL* 3.9 31.0 - - + -
598G ARG* 5.2 10.5 - - + -
601G VAL* 5.2 9.6 - - + +
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Residues in contact with PHE 476 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
472G PRO 2.8 16.2 + - - +
473G VAL* 3.5 7.4 - - + +
475G TYR* 1.3 80.1 - - + +
477G VAL* 1.3 73.5 + - + +
479G THR* 3.2 11.6 + - + -
480G LYS* 3.1 34.5 + - + +
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Residues in contact with VAL 477 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473G VAL* 2.9 30.2 + - + +
474G GLN* 4.0 4.5 - - - +
476G PHE* 1.3 86.9 - - + +
478G ALA* 1.3 57.6 + - - +
480G LYS* 3.4 4.8 + - - +
481G LEU* 2.8 30.2 + - + +
539G TYR* 3.6 24.0 - - + +
542G ILE* 3.7 24.9 - - + -
543G SER* 3.2 27.1 - - - +
546G MET* 6.1 0.4 - - + -
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Residues in contact with ALA 478 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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474G GLN 2.9 18.7 + - - +
475G TYR* 3.5 9.2 - - + +
476G PHE 3.2 0.2 - - - -
477G VAL* 1.3 77.0 - - - +
479G THR* 1.3 55.9 + - - +
481G LEU* 3.3 11.0 + - + +
482G SER* 2.9 29.5 + - - -
594G SER* 6.0 4.3 - - - +
598G ARG* 3.4 39.9 + - + +
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Residues in contact with THR 479 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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475G TYR* 3.0 31.5 + - - -
476G PHE* 3.3 14.3 - - + -
478G ALA* 1.3 76.1 - - - +
480G LYS* 1.3 63.3 + - + +
482G SER* 2.5 26.3 + - - +
483G GLN* 3.1 8.8 + - + +
486G ARG* 5.3 0.2 + - - -
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Residues in contact with LYS 480 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
476G PHE* 3.1 25.2 + - + +
477G VAL* 4.1 6.1 - - - +
479G THR* 1.3 81.7 - - + +
481G LEU* 1.3 57.2 + - - +
483G GLN* 3.4 10.2 + - + +
484G ALA* 3.0 28.3 + - + +
535G ALA* 5.9 9.4 - - - -
538G VAL* 6.2 4.3 - - - -
539G TYR* 5.5 9.6 - - + -
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Residues in contact with LEU 481 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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477G VAL* 2.8 20.6 + - + +
478G ALA* 3.3 7.9 - - - +
480G LYS* 1.3 77.7 - - - +
482G SER* 1.3 57.6 + - - +
484G ALA* 3.3 7.1 + - + -
485G GLN* 2.8 53.6 + - + +
536G PHE* 5.2 14.8 - - + +
539G TYR* 4.7 20.1 - - + +
540G THR* 5.9 0.7 - - - +
598G ARG* 4.5 17.0 - - - +
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Residues in contact with SER 482 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478G ALA 2.9 11.9 + - - -
479G THR* 2.5 27.1 + - - +
481G LEU* 1.3 73.4 - - - +
483G GLN* 1.3 64.7 + - - +
485G GLN* 3.2 12.3 + - - +
486G ARG* 3.0 43.8 + - - +
598G ARG* 5.8 6.7 - - - -
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Residues in contact with GLN 483 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
479G THR* 3.1 8.2 + - + +
480G LYS* 3.5 14.8 - - + +
482G SER* 1.3 81.5 + - - +
484G ALA* 1.3 62.2 + - - +
486G ARG* 2.7 40.7 + - - +
487G THR* 3.1 33.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA 484 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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480G LYS* 3.0 17.8 + - + +
481G LEU* 3.3 8.5 + - + +
483G GLN* 1.3 74.3 - - - +
485G GLN* 1.3 55.6 + - - +
487G THR* 3.5 9.2 + - - -
488G THR* 2.4 39.4 + - - +
532G SER* 4.7 6.0 - - - +
535G ALA* 4.1 28.0 - - + -
536G PHE* 4.9 6.7 - - + +
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Residues in contact with GLN 485 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481G LEU* 2.8 44.8 + - + +
482G SER* 3.2 15.5 + - - +
484G ALA* 1.3 76.6 - - - +
486G ARG* 1.3 58.7 + - + +
488G THR* 3.2 8.4 + - - -
489G LEU* 2.9 43.2 + - + +
536G PHE* 6.2 0.8 - - - +
1134G GLN* 3.6 26.1 + - - +
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Residues in contact with ARG 486 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
482G SER* 3.0 32.0 + - - +
483G GLN* 2.7 47.1 + - - +
485G GLN* 1.3 75.9 - - + +
487G THR* 1.3 63.3 + - - +
489G LEU* 3.3 14.1 + - + +
490G GLU* 3.0 34.4 + - - +
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Residues in contact with THR 487 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
483G GLN* 3.1 25.6 + - - +
484G ALA* 3.7 12.1 - - - -
486G ARG* 1.3 77.2 - - - +
488G THR* 1.3 60.9 - - - +
490G GLU* 3.2 15.8 + - - +
491G HIS* 3.1 45.3 + - + +
532G SER* 4.3 11.7 - - - +
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Residues in contact with THR 488 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484G ALA 2.4 27.1 + - - -
485G GLN* 3.6 9.5 - - - -
487G THR* 1.3 76.1 - - - +
489G LEU* 1.3 58.5 + - - +
491G HIS* 3.5 3.5 + - + +
492G SER* 2.9 34.7 + - - -
529G GLU* 5.3 7.4 - - + +
532G SER* 3.3 30.0 + - - -
533G LEU* 5.5 2.5 - - + +
536G PHE* 5.9 1.2 - - - +
1130G ASN* 6.1 1.6 - - - +
1134G GLN* 4.1 22.4 + - - +
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Residues in contact with LEU 489 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
485G GLN* 2.9 29.8 + - + +
486G ARG* 3.6 15.9 - - + +
487G THR 3.3 0.2 - - - -
488G THR* 1.3 75.4 - - - +
490G GLU* 1.3 59.8 + - + +
492G SER* 2.8 21.9 + - - +
493G ASN* 2.9 19.9 + - - +
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Residues in contact with GLU 490 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486G ARG* 3.0 22.8 + - - +
487G THR* 3.2 15.5 + - - +
489G LEU* 1.3 78.2 - - + +
491G HIS* 1.3 69.8 + - + +
493G ASN* 3.4 5.1 + - - +
494G GLU* 3.1 22.9 + - - +
----------------------------------------------------------
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Residues in contact with HIS 491 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
487G THR* 3.1 37.2 + - + +
488G THR* 4.0 4.9 - - - +
490G GLU* 1.3 82.7 + - + +
492G SER* 1.3 57.2 + - - +
494G GLU* 3.4 7.5 + - + +
495G ARG* 3.0 29.1 + - - +
525G THR* 4.7 6.4 - - - +
528G LYS* 2.9 47.1 + - + +
529G GLU* 4.0 19.3 - - + +
531G THR* 5.4 2.2 - - - -
532G SER* 4.3 5.3 - - - -
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Residues in contact with SER 492 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488G THR* 2.9 20.6 + - - -
489G LEU* 2.8 29.8 + - - +
491G HIS* 1.3 75.2 - - - +
493G ASN* 1.3 58.2 + - - +
495G ARG* 3.8 5.2 - - - +
496G LEU* 2.9 32.4 + - - +
529G GLU* 5.8 2.2 - - - +
1125G PHE* 5.7 0.2 - - - -
1130G ASN* 4.8 15.9 - - - -
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Residues in contact with ASN 493 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
489G LEU 2.9 18.3 + - - +
490G GLU* 3.7 5.4 - - - +
492G SER* 1.3 78.2 + - - +
494G GLU* 1.3 62.4 + - - +
496G LEU* 4.1 3.2 - - - +
497G LYS* 3.0 28.6 + - - +
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Residues in contact with GLU 494 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
490G GLU 3.1 14.7 + - - +
491G HIS* 3.5 11.4 - - + +
492G SER 3.3 0.2 - - - -
493G ASN* 1.3 76.7 - - - +
495G ARG* 1.3 62.4 + - - +
497G LYS* 4.0 3.1 - - - +
498G GLN* 3.0 27.1 + - - +
525G THR* 5.2 8.7 - - - -
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Residues in contact with ARG 495 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491G HIS 3.0 17.1 + - - +
492G SER* 3.9 5.8 - - - +
494G GLU* 1.3 75.3 - - - +
496G LEU* 1.3 58.6 + - - +
498G GLN* 3.5 4.3 + - - +
499G THR* 2.8 30.9 + - - -
522G VAL* 5.8 2.5 - - - +
525G THR* 4.2 24.4 - - - +
526G ARG* 5.4 1.3 - - - +
529G GLU* 6.2 2.2 - - + -
1125G PHE* 4.2 16.2 - - + -
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Residues in contact with LEU 496 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
492G SER 2.9 18.8 + - - +
493G ASN* 4.2 3.4 - - - +
495G ARG* 1.3 77.3 - - - +
497G LYS* 1.3 59.6 + - - +
499G THR* 3.3 2.3 + - - -
500G ASN* 2.9 27.7 + - - +
1122G LEU* 4.2 10.1 - - + +
1125G PHE* 3.8 22.4 - - + -
1126G SER* 5.3 9.0 - - - +
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Residues in contact with LYS 497 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
493G ASN 3.0 18.8 + - - +
494G GLU* 4.0 3.6 - - - +
496G LEU* 1.3 74.5 - - - +
498G GLN* 1.3 64.5 + - - +
500G ASN* 3.2 8.8 + - - +
501G GLU* 3.0 22.0 + - - +
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Residues in contact with GLN 498 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
494G GLU 3.0 19.3 + - - +
495G ARG* 3.9 4.7 - - - +
497G LYS* 1.3 77.4 - - - +
499G THR* 1.3 56.9 + - - +
501G GLU* 3.3 7.7 + - - +
502G MET* 2.9 29.7 + - - +
521G ARG* 6.2 4.7 - - + -
522G VAL* 6.6 0.2 - - - -
525G THR* 6.3 1.6 - - - -
1433G SER* 6.4 1.3 - - - -
----------------------------------------------------------
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Residues in contact with THR 499 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495G ARG 2.8 20.1 + - - -
496G LEU 3.5 5.6 - - - -
497G LYS 3.2 0.2 - - - -
498G GLN* 1.3 77.2 - - - +
500G ASN* 1.3 56.7 + - - +
502G MET* 3.3 5.9 + - - +
503G LEU* 2.8 31.9 + - - +
1122G LEU* 4.4 6.7 - - - -
1125G PHE* 3.9 28.5 - - - -
----------------------------------------------------------
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Residues in contact with ASN 500 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
496G LEU 2.9 13.8 + - - +
497G LYS* 3.2 11.9 + - - +
499G THR* 1.3 76.8 - - - +
501G GLU* 1.3 61.4 + - - +
503G LEU* 3.9 4.5 - - - +
504G ARG* 3.0 27.5 + - - +
1122G LEU* 4.2 22.4 - - + +
----------------------------------------------------------
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Residues in contact with GLU 501 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
497G LYS 3.0 13.4 + - - +
498G GLN* 3.3 10.5 + - - +
500G ASN* 1.3 75.8 - - - +
502G MET* 1.3 61.8 + - - +
504G ARG* 4.1 3.7 - - - +
505G GLY* 3.2 19.6 + - - -
1432G PHE* 5.9 2.9 - - - -
1433G SER* 4.9 21.8 - - - +
1478G GLY* 6.0 2.0 - - - -
----------------------------------------------------------
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Residues in contact with MET 502 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498G GLN 2.9 17.4 + - - +
499G THR* 3.8 6.7 - - - +
501G GLU* 1.3 78.7 - - - +
503G LEU* 1.3 57.5 + - - +
505G GLY 3.4 2.2 + - - -
506G MET* 3.0 30.0 + - - +
509G LEU* 5.6 0.7 - - - +
518G PHE* 4.7 20.2 - - + +
----------------------------------------------------------
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Residues in contact with LEU 503 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499G THR 2.8 18.7 + - - +
500G ASN* 4.0 4.5 - - - +
502G MET* 1.3 76.0 - - - +
504G ARG* 1.3 62.3 + - - +
506G MET* 3.3 19.5 + - - +
1113G PHE* 5.9 0.5 - - - +
1118G LEU* 3.9 31.8 - - + +
1121G ILE* 6.0 7.0 - - + -
1122G LEU* 6.2 4.0 - - + -
----------------------------------------------------------
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Residues in contact with ARG 504 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
500G ASN 3.0 17.4 + - - +
501G GLU* 4.2 4.0 - - - +
503G LEU* 1.3 78.1 - - - +
505G GLY* 1.3 58.4 + - - +
506G MET 3.2 2.6 + - - -
507G LYS* 4.7 4.9 + - - +
1118G LEU* 4.1 17.0 - - + +
1430G VAL* 5.5 1.4 - - - +
----------------------------------------------------------
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Residues in contact with GLY 505 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501G GLU 3.2 14.8 + - - -
502G MET* 3.4 5.8 - - - -
504G ARG* 1.3 75.4 - - - +
506G MET* 1.3 62.7 + - - +
507G LYS* 3.2 3.6 - - - -
508G LEU* 3.2 10.5 + - - +
509G LEU* 3.1 19.6 + - - +
1430G VAL* 4.6 19.7 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il