Contacts of the helix formed by residues 514 - 566 (chain E) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TRP 514 (chain E).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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509E LEU* 2.9 21.7 + - + +
512E TYR* 4.2 11.4 - - + -
513E ALA* 1.3 73.8 - - - +
515E GLU* 1.3 63.8 + - - +
516E SER 3.3 2.7 - - - -
517E ILE* 3.9 16.2 + - + +
518E PHE* 3.9 10.7 + - - +
1442E PRO* 3.6 32.8 - - + +
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Residues in contact with GLU 515 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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509E LEU* 4.2 14.9 + - + +
510E LYS* 6.4 0.2 - - - -
513E ALA* 3.3 5.4 + - - -
514E TRP* 1.3 76.6 - - - +
516E SER* 1.3 59.4 + - - +
518E PHE* 3.4 4.6 + - - +
519E CYS* 2.9 30.8 + - - +
1106E ILE* 4.5 25.1 - - + +
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Residues in contact with SER 516 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
513E ALA 4.6 4.8 + - - -
514E TRP 3.3 0.8 - - - -
515E GLU* 1.3 77.2 - - - +
517E ILE* 1.3 60.0 + - - +
519E CYS* 3.5 6.4 + - - +
520E SER* 2.9 28.8 + - - -
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Residues in contact with ILE 517 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
514E TRP* 3.9 13.2 + - + +
515E GLU 3.3 0.6 - - - -
516E SER* 1.3 77.0 - - - +
518E PHE* 1.3 59.1 + - - +
520E SER* 3.1 9.7 + - - -
521E ARG* 3.0 22.9 + - - +
1441E ASP 5.3 7.9 - - - +
1442E PRO* 6.4 1.1 - - + -
1444E LYS* 4.6 20.4 - - + -
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Residues in contact with PHE 518 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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502E MET* 4.7 19.7 - - + +
514E TRP 3.9 8.3 + - - +
515E GLU* 3.4 6.2 + - - +
516E SER 3.3 0.2 - - - -
517E ILE* 1.3 77.0 - - + +
519E CYS* 1.3 61.0 + - - +
521E ARG* 3.2 11.5 + - + +
522E VAL* 2.9 25.3 + - - +
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Residues in contact with CYS 519 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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515E GLU 2.9 19.0 + - - +
516E SER* 3.8 6.7 - - - +
518E PHE* 1.3 78.3 - - - +
520E SER* 1.3 56.6 + - - +
522E VAL* 3.3 11.0 - - + +
523E GLU* 2.8 26.5 + - - +
1102E LEU* 5.8 9.0 - - + +
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Residues in contact with SER 520 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516E SER 2.9 14.2 + - - -
517E ILE* 3.1 13.2 + - - -
519E CYS* 1.3 75.3 - - - +
521E ARG* 1.3 60.6 + - - +
523E GLU* 3.1 9.0 + - - +
524E VAL* 2.9 27.9 + - - +
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Residues in contact with ARG 521 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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498E GLN* 6.2 5.2 - - + -
517E ILE 3.0 11.8 + - - +
518E PHE* 3.2 15.9 + - + +
520E SER* 1.3 73.4 - - - +
522E VAL* 1.3 65.0 + - - +
524E VAL* 3.2 8.5 + - - +
525E THR* 3.0 24.4 + - - -
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Residues in contact with VAL 522 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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495E ARG* 5.8 2.4 - - - +
498E GLN* 6.6 0.2 - - - -
518E PHE 2.9 13.2 + - - +
519E CYS* 3.3 15.3 - - + +
521E ARG* 1.3 74.5 - - - +
523E GLU* 1.3 57.5 + - - +
525E THR* 3.4 5.4 + - - -
526E ARG* 2.8 32.3 + - - +
1102E LEU* 6.1 5.6 - - + -
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Residues in contact with GLU 523 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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519E CYS 2.8 14.9 + - - +
520E SER* 3.1 13.2 + - - +
522E VAL* 1.3 75.8 - - - +
524E VAL* 1.3 57.5 + - - +
526E ARG* 3.3 7.0 + - - +
527E ARG* 2.8 30.0 + - - +
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Residues in contact with VAL 524 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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520E SER 2.9 13.5 + - - +
521E ARG* 3.5 11.7 - - - +
523E GLU* 1.3 75.9 - - - +
525E THR* 1.3 62.5 + - - +
527E ARG* 3.1 7.7 + - - +
528E LYS* 3.1 20.6 + - - +
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Residues in contact with THR 525 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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491E HIS* 4.7 7.7 - - - +
494E GLU* 5.2 6.3 - - - -
495E ARG* 4.2 29.3 - - - +
498E GLN* 6.3 1.6 - - - -
521E ARG 3.0 16.3 + - - -
522E VAL* 4.0 4.0 - - - -
524E VAL* 1.3 75.6 - - - +
526E ARG* 1.3 57.8 + - - +
528E LYS* 3.3 9.6 + - - +
529E GLU* 2.9 26.2 + - - +
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Residues in contact with ARG 526 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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495E ARG* 5.4 2.7 - - - +
522E VAL 2.8 20.2 + - - +
523E GLU* 3.5 9.6 - - - +
525E THR* 1.3 75.6 - - - +
527E ARG* 1.3 60.3 + - - +
529E GLU* 3.2 10.4 + - - +
530E MET* 2.8 26.3 + - - +
1098E HIS* 5.9 7.4 - - + -
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Residues in contact with ARG 527 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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523E GLU 2.8 17.1 + - - +
524E VAL* 3.1 7.2 + - - +
526E ARG* 1.3 73.4 - - - +
528E LYS* 1.3 62.4 + - - +
530E MET* 3.1 9.5 + - - +
531E THR* 3.0 25.5 + - - -
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Residues in contact with LYS 528 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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491E HIS* 2.9 41.2 + - + +
524E VAL 3.1 11.8 + - - +
525E THR* 3.5 12.1 - - - +
526E ARG 3.3 0.2 - - - -
527E ARG* 1.3 77.0 - - - +
529E GLU* 1.3 60.3 + - - +
531E THR* 3.2 8.1 + - - -
532E SER 3.1 15.1 + - - -
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Residues in contact with GLU 529 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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488E THR* 5.3 6.0 - - + +
491E HIS* 3.6 17.8 + - + -
492E SER* 5.8 1.1 - - - +
525E THR 2.9 14.4 + - - +
526E ARG* 3.2 13.9 + - - +
528E LYS* 1.3 77.9 - - - +
530E MET* 1.3 55.5 + - - +
532E SER* 3.2 7.1 + - - -
533E LEU* 2.8 29.0 + - - +
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Residues in contact with MET 530 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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526E ARG 2.8 18.0 + - - +
527E ARG* 3.1 12.3 + - - +
529E GLU* 1.3 70.4 - - - +
531E THR* 1.3 61.7 + - - +
533E LEU* 3.7 7.6 - - - +
534E ARG* 2.9 29.3 + - - +
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Residues in contact with THR 531 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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491E HIS* 5.4 2.7 - - - -
527E ARG 3.0 12.4 + - - -
528E LYS* 3.2 13.4 + - - -
530E MET* 1.3 75.9 - - - +
532E SER* 1.3 62.9 + - - +
534E ARG* 3.3 7.9 + - - +
535E ALA* 3.1 19.9 + - - +
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Residues in contact with SER 532 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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484E ALA* 4.7 3.9 - - - +
487E THR* 4.3 10.5 - - - -
488E THR* 3.3 42.6 + - - -
491E HIS* 4.3 8.0 + - - -
528E LYS 3.1 9.4 + - - -
529E GLU* 3.5 8.7 - - - -
531E THR* 1.3 78.4 - - - +
533E LEU* 1.3 57.4 + - - +
535E ALA* 3.2 10.3 + - - +
536E PHE* 3.0 24.3 + - - +
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Residues in contact with LEU 533 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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488E THR* 5.5 2.9 - - + +
529E GLU 2.8 19.8 + - - +
530E MET* 3.8 8.3 - - - +
531E THR 3.2 0.2 - - - -
532E SER* 1.3 70.2 - - - +
534E ARG* 1.3 61.4 + - - +
535E ALA 3.3 0.2 - - - -
536E PHE* 3.3 10.5 + - + +
537E ALA* 2.8 26.3 + - - +
1091E LEU* 5.9 9.0 - - + +
1094E ALA* 6.3 3.1 - - + -
1133E ASP* 5.6 14.4 - - + +
1134E GLN* 6.0 3.1 - - - +
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Residues in contact with ARG 534 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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530E MET 2.9 18.1 + - - +
531E THR* 3.7 7.0 - - - +
533E LEU* 1.3 74.3 - - - +
535E ALA* 1.3 59.6 + - - +
537E ALA* 3.2 9.0 + - - +
538E VAL* 2.9 28.6 + - - +
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Residues in contact with ALA 535 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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480E LYS* 5.9 8.6 - - - +
484E ALA* 4.1 19.7 - - + -
531E THR 3.1 12.4 + - - +
532E SER* 3.2 13.2 + - - +
534E ARG* 1.3 76.8 - - - +
536E PHE* 1.3 61.0 + - - +
538E VAL* 3.3 8.9 + - - +
539E TYR* 3.0 24.1 + - - +
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Residues in contact with PHE 536 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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481E LEU* 5.2 13.2 - - + +
484E ALA* 4.9 4.6 - - + +
485E GLN* 6.2 0.4 - - - +
488E THR* 5.9 1.3 - - - +
532E SER 3.0 12.4 + - - +
533E LEU* 3.4 13.0 - - + +
534E ARG 3.3 0.2 - - - -
535E ALA* 1.3 75.9 - - - +
537E ALA* 1.3 57.3 + - - +
539E TYR* 3.3 5.1 + - - +
540E THR* 2.9 33.9 + - - -
1133E ASP 5.4 4.7 - - - +
1134E GLN* 5.2 14.4 - - - +
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Residues in contact with ALA 537 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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533E LEU 2.8 15.1 + - - +
534E ARG* 3.2 13.2 + - - +
536E PHE* 1.3 75.3 - - - +
538E VAL* 1.3 63.7 + - - +
540E THR* 3.9 1.9 - - - -
541E SER* 3.0 26.9 + - - -
1087E GLU* 3.6 36.1 - - + +
1088E TRP* 5.9 0.4 - - - -
1091E LEU* 5.8 4.3 - - + -
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Residues in contact with VAL 538 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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480E LYS* 6.2 4.0 - - - -
534E ARG 2.9 13.2 + - - +
535E ALA* 3.4 12.6 - - - +
537E ALA* 1.3 76.5 - - - +
539E TYR* 1.3 57.7 + - - +
541E SER* 3.4 3.9 + - - -
542E ILE* 3.0 30.1 + - - +
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Residues in contact with TYR 539 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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477E VAL* 4.1 17.5 - - + +
480E LYS* 5.5 10.3 - - + -
481E LEU* 4.7 24.0 - - + +
535E ALA 3.0 16.5 + - - +
536E PHE* 4.1 2.7 - - - +
538E VAL* 1.3 77.4 - - - +
540E THR* 1.3 58.7 + - - +
542E ILE* 3.2 10.6 - - - +
543E SER* 3.0 31.9 + - - -
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Residues in contact with THR 540 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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481E LEU* 5.9 1.1 - - - +
536E PHE* 2.9 18.8 + - - -
537E ALA* 4.1 3.8 - - - -
539E TYR* 1.3 76.3 - - - +
541E SER* 1.3 59.2 + - - +
543E SER* 3.2 5.6 + - - -
544E ILE* 2.9 38.5 + - - +
1087E GLU* 5.6 3.8 - - - -
1138E SER* 5.5 11.2 - - - -
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Residues in contact with SER 541 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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537E ALA 3.0 18.8 + - - -
538E VAL* 3.9 4.0 - - - -
540E THR* 1.3 78.1 - - - +
542E ILE* 1.3 57.1 + - - +
544E ILE* 4.8 0.2 - - - -
545E PHE* 2.9 30.5 + - - +
1080E LEU* 5.1 3.0 - - - +
1083E SER* 3.8 36.9 - - - -
1084E VAL* 4.1 11.9 - - - -
1087E GLU* 4.8 2.4 - - - +
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Residues in contact with ILE 542 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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473E VAL* 5.7 0.4 - - + -
477E VAL* 3.7 30.3 - - + -
538E VAL 3.0 17.1 + - - +
539E TYR* 3.2 18.6 - - - +
541E SER* 1.3 76.3 - - - +
543E SER* 1.3 57.4 + - - +
545E PHE* 3.4 14.9 + - + +
546E MET* 3.0 58.6 + - + +
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Residues in contact with SER 543 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474E GLN* 5.9 1.0 - - - -
477E VAL* 3.2 20.3 - - - +
539E TYR 3.0 18.5 + - - -
540E THR* 3.2 7.4 + - - -
542E ILE* 1.3 78.6 - - - +
544E ILE* 1.3 61.4 + - - +
546E MET* 3.3 6.8 + - - +
547E ASN* 2.8 42.4 + - - +
591E PHE* 6.1 0.7 - - - -
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Residues in contact with ILE 544 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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540E THR* 2.9 20.6 + - - +
543E SER* 1.3 79.8 - - - +
545E PHE* 1.3 58.4 + - - +
547E ASN* 3.3 12.6 + - + +
548E THR* 2.8 36.8 + - + +
591E PHE* 6.4 0.7 - - + -
1083E SER* 4.1 8.5 - - - -
1138E SER* 5.4 15.7 - - - +
1141E GLU* 3.1 42.8 - - + +
1142E CYS* 6.0 1.6 - - + -
1145E ARG* 3.8 24.9 - - - +
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Residues in contact with PHE 545 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541E SER 2.9 19.6 + - - +
542E ILE* 3.8 21.1 - - + +
544E ILE* 1.3 75.3 - - - +
546E MET* 1.3 72.6 + - + +
548E THR* 3.2 5.9 + - - -
549E ALA* 2.9 53.0 + - + +
1078E LEU 4.5 2.5 - - - -
1079E CYS* 3.9 12.1 - - + -
1080E LEU* 3.2 49.1 - - + +
1083E SER* 4.6 1.7 - - - -
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Residues in contact with MET 546 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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469E LEU 6.0 0.2 - - - +
470E LEU* 4.4 15.5 - - + -
473E VAL* 3.7 37.5 - - + -
474E GLN* 5.4 5.2 - - + -
477E VAL* 6.1 0.4 - - + -
542E ILE* 3.0 40.6 + - + +
543E SER* 3.6 9.9 - - - +
545E PHE* 1.3 87.0 - - + +
547E ASN* 1.3 61.4 + - - +
548E THR 3.0 5.4 + - - -
550E ILE* 3.1 50.0 + - - +
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Residues in contact with ASN 547 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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470E LEU* 5.0 2.3 - - - +
474E GLN* 3.5 15.9 + - - +
543E SER* 2.8 31.0 + - - +
544E ILE* 3.7 15.1 - - + +
546E MET* 1.3 74.6 - - - +
548E THR* 1.3 61.9 + - + +
550E ILE* 5.5 0.4 - - - -
551E PRO* 4.3 11.5 - - - +
587E VAL* 4.9 13.7 - - + +
591E PHE* 3.2 47.4 - - - +
1145E ARG* 5.8 6.0 + - - +
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Residues in contact with THR 548 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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544E ILE* 2.8 33.9 + - + +
545E PHE* 3.2 12.1 + - - -
547E ASN* 1.3 82.8 - - - +
549E ALA* 1.3 62.1 + - - +
550E ILE 3.5 1.1 - - - -
551E PRO* 3.3 15.2 - - - +
552E ILE* 3.9 11.1 - - - +
1079E CYS 5.2 4.0 + - - -
1080E LEU* 5.8 0.3 - - - -
1141E GLU* 5.7 0.2 - - - +
1145E ARG* 3.8 29.6 - - - +
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Residues in contact with ALA 549 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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545E PHE* 2.9 52.8 + - + +
546E MET* 5.3 0.2 - - - -
548E THR* 1.3 73.0 + - - +
550E ILE* 1.3 66.0 + - + +
551E PRO 3.4 0.2 - - - -
552E ILE* 3.2 12.9 + - + +
553E ALA* 3.2 22.2 + - - +
1078E LEU* 4.9 11.0 - - + +
1079E CYS 6.1 0.2 - - - -
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Residues in contact with ILE 550 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466E VAL* 4.5 26.5 - - + +
467E ILE* 5.5 1.8 - - + -
469E LEU* 5.7 3.1 - - + -
470E LEU* 3.7 41.7 - - + -
546E MET* 3.1 35.4 + - - +
547E ASN* 5.5 0.4 - - - -
549E ALA* 1.3 77.8 - - + +
551E PRO* 1.4 68.6 - - + +
552E ILE 3.2 0.2 + - - -
553E ALA* 3.3 8.9 + - + +
554E ALA* 3.0 24.5 + - + +
587E VAL* 5.9 4.9 - - + -
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Residues in contact with PRO 551 (chain E).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547E ASN 4.3 10.8 - - - +
548E THR 3.3 20.2 - - - +
550E ILE* 1.4 93.1 - - + +
552E ILE* 1.3 64.1 + - + +
554E ALA* 4.1 6.1 - - + +
555E VAL* 3.6 19.9 + - - +
580E LEU* 5.9 1.2 - - - +
583E PHE* 5.3 11.3 - - + +
584E HIS* 5.8 9.2 - - + +
587E VAL* 3.9 29.8 - - + -
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Residues in contact with ILE 552 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
548E THR 3.9 15.5 - - - +
549E ALA* 3.4 12.3 - - + +
550E ILE 3.1 0.8 - - - -
551E PRO* 1.3 78.5 - - + +
553E ALA* 1.3 61.7 + - + +
555E VAL* 3.4 4.1 + - - +
556E LEU* 3.0 29.3 + - + +
1027E LEU* 5.1 19.1 - - + -
1030E ILE* 5.9 5.6 - - + -
1075E GLY* 3.3 40.6 - - - +
1078E LEU* 4.3 18.8 - - + -
----------------------------------------------------------
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Residues in contact with ALA 553 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466E VAL* 5.4 2.7 - - + -
549E ALA 3.2 12.7 + - - +
550E ILE* 4.0 10.1 - - + +
552E ILE* 1.3 78.9 - - + +
554E ALA* 1.3 66.5 + - - +
556E LEU* 4.5 4.5 - - - -
557E ILE* 3.0 30.3 + - + +
----------------------------------------------------------
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Residues in contact with ALA 554 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462E ILE* 5.4 1.0 - - - +
463E GLY* 4.6 11.6 + - - +
466E VAL* 4.0 24.5 - - + +
550E ILE* 3.0 19.5 + - + +
551E PRO* 4.2 7.4 - - + +
553E ALA* 1.3 75.7 - - - +
555E VAL* 1.3 58.0 + - - +
557E ILE* 4.5 1.0 - - - +
558E THR* 3.0 34.5 + - - -
583E PHE* 4.7 16.4 - - + -
----------------------------------------------------------
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Residues in contact with VAL 555 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
551E PRO 3.6 15.3 + - - +
552E ILE* 3.4 3.8 + - - +
554E ALA* 1.3 77.9 - - - +
556E LEU* 1.3 64.0 + - - +
558E THR* 3.8 0.9 - - - -
559E PHE* 3.0 27.7 + - - +
580E LEU* 4.8 14.6 - - + -
583E PHE* 4.4 21.3 - - + -
----------------------------------------------------------
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Residues in contact with LEU 556 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552E ILE* 3.0 22.0 + - + +
553E ALA* 3.9 6.3 - - - +
555E VAL* 1.3 78.4 - - - +
557E ILE* 1.3 59.1 + - + +
559E PHE* 3.4 1.9 + - - +
560E VAL* 3.0 32.7 + - - +
1071E LEU* 5.4 3.8 - - + +
1072E CYS* 5.3 14.4 - - + +
1075E GLY* 5.5 4.9 - - - -
----------------------------------------------------------
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Residues in contact with ILE 557 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462E ILE* 4.5 10.8 - - + +
553E ALA* 3.0 19.0 + - + +
554E ALA* 4.5 0.7 - - - +
556E LEU* 1.3 77.8 - - + +
558E THR* 1.3 56.8 + - - +
560E VAL* 4.6 4.3 - - - -
561E GLY* 2.8 28.1 + - - -
----------------------------------------------------------
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Residues in contact with THR 558 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456E LEU* 5.3 5.8 - - - -
459E SER* 3.5 22.4 - - - -
462E ILE* 4.0 14.7 - - - +
463E GLY 4.7 2.0 - - - -
554E ALA 3.0 22.2 + - - -
555E VAL* 3.8 4.5 - - - -
557E ILE* 1.3 78.3 - - - +
559E PHE* 1.3 56.6 + - - +
562E HIS* 2.9 30.0 + - - +
583E PHE* 4.5 16.6 - - - -
----------------------------------------------------------
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Residues in contact with PHE 559 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555E VAL 3.0 17.4 + - - +
556E LEU* 4.2 2.0 - - - +
558E THR* 1.3 76.1 - - - +
560E VAL* 1.3 57.6 + - - +
562E HIS* 3.3 7.4 - - - +
563E VAL* 2.9 30.7 + - - +
----------------------------------------------------------
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Residues in contact with VAL 560 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556E LEU 3.0 19.6 + - - +
557E ILE* 4.3 3.6 - - - +
559E PHE* 1.3 77.4 - - - +
561E GLY* 1.3 56.8 + - - +
563E VAL* 4.2 2.9 - - - +
564E SER* 2.8 36.8 + - - -
1068E PHE* 5.9 11.4 - - + +
1072E CYS* 6.0 6.7 - - + -
----------------------------------------------------------
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Residues in contact with GLY 561 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
459E SER* 5.0 3.1 - - - -
557E ILE 2.8 18.9 + - - -
558E THR 4.0 0.2 - - - -
560E VAL* 1.3 73.5 - - - +
562E HIS* 1.3 53.9 + - - +
564E SER* 4.7 2.7 - - - -
565E PHE* 2.6 41.5 + - - +
----------------------------------------------------------
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Residues in contact with HIS 562 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456E LEU* 5.7 8.7 - - + +
458E VAL* 5.7 3.4 - - - -
459E SER* 3.7 18.7 - - - -
558E THR 2.9 19.7 + - - +
559E PHE* 3.3 10.3 - - - +
561E GLY* 1.3 79.6 - - - +
563E VAL* 1.3 61.4 + - + +
565E PHE* 3.5 8.3 + - - +
566E PHE* 3.6 12.8 + - - +
569E SER* 4.3 6.9 - - - -
----------------------------------------------------------
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Residues in contact with VAL 563 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
559E PHE 2.9 15.9 + - - +
560E VAL* 4.2 2.9 - - - +
562E HIS* 1.3 74.5 - - + +
564E SER* 1.3 62.9 + - - +
566E PHE 2.8 21.8 - - - +
567E LYS* 3.9 4.0 + - - -
569E SER* 3.9 19.7 - - - -
1064E TYR* 6.4 2.2 - - + -
----------------------------------------------------------
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Residues in contact with SER 564 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
560E VAL* 2.8 23.6 + - - -
561E GLY* 4.7 2.5 - - - -
563E VAL* 1.3 71.3 - - - +
565E PHE* 1.3 63.8 + - - +
566E PHE* 3.2 0.9 + - - -
----------------------------------------------------------
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Residues in contact with PHE 565 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458E VAL* 5.1 14.4 - - + -
561E GLY 2.6 24.9 + - - +
562E HIS* 3.7 6.1 - - - +
563E VAL 3.2 0.4 - - - -
564E SER* 1.3 78.2 - - - +
566E PHE* 1.3 62.5 + - + +
----------------------------------------------------------
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Residues in contact with PHE 566 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
562E HIS 3.6 8.0 + - - +
563E VAL 2.8 17.9 - - - +
564E SER 3.2 1.5 - - - -
565E PHE* 1.3 84.6 - - + +
567E LYS* 1.3 58.5 + - - +
568E GLU* 3.1 17.9 + - + +
569E SER* 3.4 10.7 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il