Contacts of the helix formed by residues 514 - 566 (chain G) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TRP 514 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509G LEU* 2.9 22.6 + - + +
512G TYR* 4.2 11.7 - - + -
513G ALA* 1.3 73.8 - - - +
515G GLU* 1.3 61.0 + - - +
516G SER* 3.3 3.0 + - - -
517G ILE* 3.9 14.9 + - + +
518G PHE* 3.9 10.9 + - - +
1442G PRO* 3.6 32.3 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 515 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509G LEU* 4.2 15.3 + - + +
513G ALA* 3.3 5.2 - - - -
514G TRP* 1.3 76.3 - - - +
516G SER* 1.3 59.9 + - - +
518G PHE* 3.4 4.2 + - - +
519G CYS* 2.9 31.6 + - - +
1106G ILE* 4.5 24.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 516 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
513G ALA 4.6 4.7 + - - -
514G TRP 3.3 0.6 - - - -
515G GLU* 1.3 77.3 - - - +
517G ILE* 1.3 60.0 + - - +
519G CYS* 3.5 6.4 + - - +
520G SER* 2.9 28.6 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 517 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
514G TRP* 3.9 13.0 + - + +
515G GLU 3.3 0.6 - - - -
516G SER* 1.3 78.0 - - - +
518G PHE* 1.3 60.3 + - + +
520G SER* 3.1 9.4 + - - -
521G ARG* 3.0 23.2 + - - +
1441G ASP 5.3 7.6 - - - +
1442G PRO 6.4 1.1 - - - -
1444G LYS* 4.6 20.6 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 518 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502G MET* 4.7 20.2 - - + +
514G TRP 3.9 8.6 + - - +
515G GLU* 3.4 5.6 + - - +
517G ILE* 1.3 76.9 - - - +
519G CYS* 1.3 60.6 + - - +
521G ARG* 3.2 11.7 + - + +
522G VAL* 2.9 24.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with CYS 519 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
515G GLU* 2.9 19.9 + - + +
516G SER* 3.8 6.5 - - - +
518G PHE* 1.3 77.4 - - - +
520G SER* 1.3 57.2 + - - +
522G VAL* 3.3 10.5 - - + +
523G GLU* 2.8 26.3 + - - +
1102G LEU* 5.8 9.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 520 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516G SER 2.9 16.0 + - - -
517G ILE* 3.1 12.5 + - - -
519G CYS* 1.3 75.2 - - - +
521G ARG* 1.3 58.9 + - - +
523G GLU* 3.1 9.5 + - - +
524G VAL* 2.9 27.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 521 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498G GLN* 6.2 4.9 - - + -
517G ILE 3.0 12.6 + - - +
518G PHE* 3.2 15.2 + - + +
520G SER* 1.3 73.4 - - - +
522G VAL* 1.3 65.1 + - - +
524G VAL* 3.2 7.8 + - - +
525G THR* 3.0 24.3 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 522 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495G ARG* 5.8 2.4 - - - +
518G PHE 2.9 14.9 + - - +
519G CYS* 3.3 14.6 - - + +
521G ARG* 1.3 74.5 - - - +
523G GLU* 1.3 57.1 + - - +
525G THR* 3.4 4.6 + - - -
526G ARG* 2.8 32.1 + - - +
1102G LEU* 6.1 5.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 523 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519G CYS 2.8 14.7 + - - +
520G SER* 3.1 13.7 + - - +
522G VAL* 1.3 75.4 - - - +
524G VAL* 1.3 59.2 + - - +
526G ARG* 3.5 6.6 - - - +
527G ARG* 2.8 30.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 524 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
520G SER 2.9 12.7 + - - +
521G ARG* 3.2 12.1 + - - +
523G GLU* 1.3 75.9 - - - +
525G THR* 1.3 63.2 + - - +
527G ARG* 3.1 8.5 + - - +
528G LYS* 3.1 20.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 525 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491G HIS* 4.7 8.1 - - - +
494G GLU* 5.2 6.3 - - - -
495G ARG* 4.2 30.5 - - - +
498G GLN* 6.3 1.6 - - - -
521G ARG 3.0 15.2 + - - -
522G VAL* 4.0 4.3 - - - -
524G VAL* 1.3 76.3 - - - +
526G ARG* 1.3 57.3 + - - +
528G LYS* 3.3 9.1 + - - +
529G GLU* 2.9 26.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 526 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495G ARG* 5.4 2.4 - - - +
522G VAL 2.8 20.0 + - - +
523G GLU* 3.5 8.7 - - - +
525G THR* 1.3 75.1 - - - +
527G ARG* 1.3 60.2 + - - +
529G GLU* 3.2 9.9 + - - +
530G MET* 2.8 26.5 + - - +
1098G HIS* 5.9 7.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 527 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
523G GLU 2.8 17.5 + - - +
524G VAL* 3.1 7.1 + - - +
526G ARG* 1.3 73.2 - - - +
528G LYS* 1.3 60.5 + - - +
530G MET* 3.1 9.2 + - - +
531G THR* 3.0 25.5 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 528 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491G HIS* 2.9 41.3 + - + +
524G VAL 3.1 12.0 + - - +
525G THR* 3.5 12.6 - - - +
527G ARG* 1.3 77.2 - - - +
529G GLU* 1.3 61.2 + - - +
531G THR* 3.2 8.4 + - - -
532G SER 3.1 14.9 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 529 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488G THR* 5.3 6.0 - - + +
491G HIS* 3.6 18.3 + - + -
492G SER* 5.8 1.1 - - - +
525G THR 2.9 14.9 + - - +
526G ARG* 3.2 13.4 + - - +
528G LYS* 1.3 77.9 - - - +
530G MET* 1.3 55.6 + - - +
532G SER* 3.2 6.8 + - - -
533G LEU* 2.8 28.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with MET 530 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526G ARG 2.8 16.3 + - - +
527G ARG* 3.1 12.7 + - - +
529G GLU* 1.3 71.1 - - - +
531G THR* 1.3 61.8 + - - +
533G LEU* 3.8 7.6 - - - +
534G ARG* 2.9 29.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 531 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491G HIS* 5.4 2.5 - - - -
527G ARG 3.0 12.4 + - - -
528G LYS* 3.2 13.2 + - - -
530G MET* 1.3 76.1 - - - +
532G SER* 1.3 61.9 + - - +
534G ARG* 3.3 7.9 + - - +
535G ALA* 3.1 20.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 532 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484G ALA* 4.7 3.6 - - - +
487G THR* 4.3 10.5 - - - +
488G THR* 3.3 42.7 + - - -
491G HIS* 4.3 7.8 - - - -
528G LYS 3.1 9.4 + - - -
529G GLU* 3.2 9.1 + - - -
531G THR* 1.3 78.0 - - - +
533G LEU* 1.3 56.7 + - - +
535G ALA* 3.2 10.6 + - - +
536G PHE* 3.0 24.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 533 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488G THR* 5.9 3.1 - - + -
529G GLU 2.8 19.7 + - - +
530G MET* 3.8 8.7 - - - +
531G THR 3.2 0.2 - - - -
532G SER* 1.3 71.1 - - - +
534G ARG* 1.3 59.8 + - - +
536G PHE* 3.3 9.8 + - + +
537G ALA* 2.8 26.9 + - - +
1091G LEU* 5.9 9.9 - - + +
1094G ALA* 6.3 2.7 - - + -
1133G ASP* 5.6 14.6 - - + +
1134G GLN* 6.0 3.6 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 534 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
530G MET 2.9 17.9 + - - +
531G THR* 3.7 7.2 - - - +
533G LEU* 1.3 75.4 - - - +
535G ALA* 1.3 60.0 + - - +
537G ALA* 3.2 9.6 + - - +
538G VAL* 2.9 28.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 535 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480G LYS* 5.9 9.1 - - - +
484G ALA* 4.1 20.0 - - + -
531G THR 3.1 12.6 + - - +
532G SER* 3.3 12.3 - - - +
534G ARG* 1.3 76.5 - - - +
536G PHE* 1.3 60.1 - - - +
538G VAL* 3.3 8.6 + - - +
539G TYR* 3.0 23.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 536 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481G LEU* 5.2 13.4 - - + +
484G ALA* 4.9 5.0 - - + +
485G GLN* 6.2 0.9 - - - +
488G THR* 5.9 1.3 - - - +
532G SER 3.0 13.2 + - - +
533G LEU* 3.4 13.2 - - + +
535G ALA* 1.3 75.3 - - - +
537G ALA* 1.3 58.1 + - - +
539G TYR* 3.3 4.6 + - - +
540G THR* 2.9 34.3 + - - -
1133G ASP 5.4 4.9 - - - +
1134G GLN* 5.2 14.6 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 537 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
533G LEU 2.8 15.1 + - - +
534G ARG* 3.2 13.2 + - - +
536G PHE* 1.3 75.6 - - - +
538G VAL* 1.3 62.5 + - - +
540G THR* 4.7 1.6 - - - -
541G SER* 3.0 27.5 + - - -
1087G GLU* 3.6 35.5 - - + +
1091G LEU* 5.8 3.8 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 538 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480G LYS* 6.2 4.3 - - - -
534G ARG 2.9 12.9 + - - +
535G ALA* 3.4 12.1 - - - +
537G ALA* 1.3 76.5 - - - +
539G TYR* 1.3 57.6 + - + +
541G SER* 3.9 3.6 - - - -
542G ILE* 3.0 29.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR 539 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477G VAL* 3.6 17.6 - - + +
480G LYS* 5.5 10.8 - - + -
481G LEU* 4.7 24.5 - - + +
535G ALA 3.0 16.3 + - - +
536G PHE* 3.3 3.6 + - - +
538G VAL* 1.3 77.2 - - + +
540G THR* 1.3 58.0 + - - +
542G ILE* 3.2 10.3 - - - +
543G SER* 3.0 32.4 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with THR 540 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481G LEU* 5.9 1.5 - - - +
536G PHE 2.9 18.6 + - - -
537G ALA* 4.1 4.3 - - - -
539G TYR* 1.3 75.8 - - - +
541G SER* 1.3 59.9 + - - +
543G SER* 3.2 5.6 + - - +
544G ILE* 2.9 38.3 + - - +
1087G GLU* 5.6 2.9 - - - -
1138G SER* 5.5 11.4 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with SER 541 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537G ALA 3.0 19.0 + - - -
538G VAL* 3.9 4.3 - - - -
540G THR* 1.3 78.1 - - - +
542G ILE* 1.3 56.8 + - - +
544G ILE* 3.4 0.7 + - - -
545G PHE* 2.9 30.3 + - - +
1080G LEU* 5.1 3.2 - - - +
1083G SER* 3.8 36.5 - - - -
1084G VAL* 4.1 12.3 - - - -
1087G GLU* 4.8 2.4 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 542 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473G VAL* 5.7 0.4 - - + -
477G VAL* 3.7 30.1 - - + -
538G VAL 3.0 17.5 + - - +
539G TYR* 3.2 18.8 - - - +
541G SER* 1.3 75.9 - - - +
543G SER* 1.3 57.4 + - - +
545G PHE* 4.4 14.4 - - + -
546G MET* 3.0 57.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 543 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474G GLN* 5.9 1.2 - - - -
477G VAL* 3.2 20.5 - - - +
539G TYR 3.0 18.6 + - - -
540G THR* 3.7 6.5 - - - -
542G ILE* 1.3 76.6 - - - +
544G ILE* 1.3 62.1 + - - +
546G MET* 3.3 6.8 + - - +
547G ASN* 2.8 41.1 + - - +
591G PHE* 6.1 0.4 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 544 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540G THR* 2.9 22.3 + - - +
543G SER* 1.3 79.6 - - - +
545G PHE* 1.3 57.3 + - - +
547G ASN* 3.3 13.1 + - + +
548G THR* 2.8 38.3 + - + +
591G PHE* 6.4 1.1 - - + -
1083G SER* 4.1 8.1 - - - -
1138G SER* 5.4 16.2 - - - +
1141G GLU* 3.1 42.0 - - - +
1142G CYS* 6.0 1.6 - - + -
1145G ARG* 3.8 24.9 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 545 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541G SER 2.9 19.6 + - - +
542G ILE* 3.8 20.6 - - + +
544G ILE* 1.3 75.2 - - - +
546G MET* 1.3 73.3 + - + +
548G THR* 3.2 4.9 + - - -
549G ALA* 2.9 52.6 + - + +
1078G LEU 4.5 2.5 - - - -
1079G CYS* 3.9 11.9 - - + -
1080G LEU* 3.2 48.5 - - + +
1083G SER* 4.6 1.7 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with MET 546 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469G LEU 6.0 0.7 - - - +
470G LEU* 4.4 16.6 - - + -
473G VAL* 3.7 36.3 - - + -
474G GLN* 5.4 5.4 - - + -
477G VAL* 6.1 0.9 - - + -
542G ILE* 3.0 41.6 + - + +
543G SER* 3.3 9.6 + - - +
545G PHE* 1.3 86.7 - - + +
547G ASN* 1.3 60.2 + - - +
548G THR 3.0 6.1 + - - -
549G ALA* 5.3 0.4 - - - -
550G ILE* 3.1 49.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 547 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470G LEU* 5.0 1.9 - - - +
474G GLN* 3.5 16.4 + - - +
543G SER* 2.8 30.9 + - - +
544G ILE* 3.3 14.7 + - + +
546G MET* 1.3 75.8 - - - +
548G THR* 1.3 61.3 + - + +
551G PRO* 4.3 11.1 - - - +
587G VAL* 4.9 14.2 - - + +
591G PHE* 3.2 47.7 - - - +
1145G ARG* 5.8 6.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 548 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544G ILE* 2.8 32.9 + - + +
545G PHE* 3.2 12.5 + - - -
547G ASN* 1.3 82.3 - - + +
549G ALA* 1.3 61.8 + - - +
550G ILE 3.5 0.7 - - - -
551G PRO* 3.3 16.0 - - - +
552G ILE* 3.9 10.6 - - - +
1079G CYS 5.2 4.2 + - - -
1080G LEU* 5.8 0.3 - - - -
1141G GLU* 5.7 0.2 - - - +
1145G ARG* 3.8 30.3 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 549 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545G PHE* 2.9 51.9 + - + +
548G THR* 1.3 72.9 + - - +
550G ILE* 1.3 66.7 + - + +
551G PRO 3.4 0.4 - - - -
552G ILE* 3.2 14.3 + - + +
553G ALA* 3.2 22.3 + - - +
1078G LEU* 4.9 10.3 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 550 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466G VAL* 4.5 27.2 - - + +
467G ILE* 5.5 1.3 - - + -
469G LEU* 5.7 2.7 - - + -
470G LEU* 3.7 43.1 - - + +
546G MET* 3.1 34.7 + - - +
547G ASN* 5.5 0.4 - - - -
549G ALA* 1.3 76.7 - - + +
551G PRO* 1.4 68.8 - - + +
552G ILE 3.2 0.3 + - - -
553G ALA* 3.3 9.8 + - + +
554G ALA* 3.0 24.3 + - + +
587G VAL* 5.9 4.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with PRO 551 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547G ASN* 4.3 10.1 - - - +
548G THR 3.3 20.6 - - - +
550G ILE* 1.4 94.1 - - + +
552G ILE* 1.3 64.8 + - + +
554G ALA* 4.1 6.3 - - + +
555G VAL* 3.6 19.8 + - - +
580G LEU* 5.9 1.4 - - - +
583G PHE* 5.3 11.2 - - + +
584G HIS* 5.8 9.4 - - + +
587G VAL* 3.9 30.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 552 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
548G THR 3.9 16.6 - - - +
549G ALA* 3.4 11.0 - - + +
550G ILE 3.1 0.8 - - - -
551G PRO* 1.3 79.3 - - + +
553G ALA* 1.3 61.2 + - - +
555G VAL* 3.4 4.7 + - - +
556G LEU* 3.0 29.6 + - + +
1027G LEU* 5.1 18.4 - - + -
1030G ILE* 5.9 6.1 - - + -
1075G GLY* 3.3 39.7 - - - +
1078G LEU* 4.3 19.5 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 553 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466G VAL* 5.4 2.9 - - + -
549G ALA 3.2 12.8 + - - +
550G ILE* 4.0 10.3 - - + +
552G ILE* 1.3 78.1 - - - +
554G ALA* 1.3 65.7 + - - +
556G LEU* 3.9 5.1 - - - +
557G ILE* 3.0 29.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 554 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462G ILE* 5.4 0.6 - - - +
463G GLY* 4.6 12.5 + - - +
466G VAL* 4.0 25.2 - - + +
550G ILE* 3.0 19.1 + - + +
551G PRO* 4.2 7.2 - - + +
553G ALA* 1.3 76.1 - - - +
555G VAL* 1.3 57.6 + - - +
557G ILE* 4.5 0.7 - - - +
558G THR* 3.0 34.2 + - - -
583G PHE* 4.7 16.6 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 555 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
551G PRO 3.6 15.1 + - - +
552G ILE* 3.4 3.2 + - - +
554G ALA* 1.3 78.3 - - - +
556G LEU* 1.3 64.9 + - - +
558G THR* 3.8 0.3 - - - -
559G PHE* 3.0 27.0 + - - +
580G LEU* 4.8 15.0 - - + -
583G PHE* 4.4 21.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 556 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552G ILE* 3.0 21.5 + - + +
553G ALA* 3.9 5.8 - - - +
555G VAL* 1.3 77.3 - - - +
557G ILE* 1.3 58.7 + - + +
559G PHE* 4.0 2.2 - - - +
560G VAL* 3.0 33.4 + - - +
1071G LEU* 5.4 4.0 - - - +
1072G CYS* 5.3 14.4 - - + -
1075G GLY* 5.5 4.7 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 557 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462G ILE* 4.5 11.0 - - + +
553G ALA* 3.0 18.8 + - + +
554G ALA* 4.5 0.9 - - - +
556G LEU* 1.3 78.0 - - + +
558G THR* 1.3 56.4 + - - +
560G VAL* 4.6 4.3 - - - -
561G GLY* 2.8 27.5 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with THR 558 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456G LEU* 5.3 6.1 - - - -
459G SER* 3.5 22.0 - - - -
462G ILE* 4.0 14.5 - - - +
463G GLY 4.7 1.8 - - - -
554G ALA 3.0 21.6 + - - -
555G VAL* 3.8 4.7 - - - -
557G ILE* 1.3 77.6 - - - +
559G PHE* 1.3 58.6 + - - +
562G HIS* 2.9 30.4 + - - +
583G PHE* 4.5 17.7 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 559 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555G VAL 3.0 17.2 + - - +
556G LEU* 4.2 1.6 - - - +
558G THR* 1.3 76.5 - - - +
560G VAL* 1.3 58.6 + - - +
562G HIS* 3.3 6.7 - - - +
563G VAL* 2.9 30.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 560 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556G LEU 3.0 19.4 + - - +
557G ILE* 4.3 3.1 - - - +
559G PHE* 1.3 78.8 - - - +
561G GLY* 1.3 56.7 + - - +
563G VAL* 4.9 2.5 - - - -
564G SER* 2.8 36.6 + - - +
1068G PHE* 5.9 11.2 - - + +
1072G CYS* 6.0 6.3 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLY 561 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458G VAL* 5.8 0.6 - - - +
459G SER* 5.0 2.5 - - - -
557G ILE* 2.8 17.6 + - - +
560G VAL* 1.3 73.8 - - - +
562G HIS* 1.3 53.7 + - - +
564G SER* 4.7 2.0 - - - -
565G PHE* 2.6 41.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with HIS 562 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456G LEU* 5.7 8.5 - - + +
458G VAL* 5.7 3.5 - - - +
459G SER* 3.7 19.4 - - - -
558G THR 2.9 19.5 + - - +
559G PHE* 3.3 9.6 - - - +
561G GLY* 1.3 79.6 - - - +
563G VAL* 1.3 61.8 + - + +
565G PHE* 3.5 7.6 + - - +
566G PHE* 3.6 13.3 + - - +
569G SER* 4.3 7.9 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 563 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
559G PHE 2.9 17.6 + - - +
560G VAL* 4.2 2.9 - - - +
562G HIS* 1.3 74.2 - - - +
564G SER* 1.3 64.1 + - - +
566G PHE 2.8 21.5 - - - +
567G LYS* 3.9 4.5 + - - -
569G SER* 3.9 18.6 - - - -
1064G TYR* 6.4 2.5 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with SER 564 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
560G VAL* 2.8 23.4 + - - -
561G GLY* 4.7 2.5 - - - -
563G VAL* 1.3 71.5 - - - +
565G PHE* 1.3 64.0 + - - +
566G PHE 3.2 0.7 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 565 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458G VAL* 5.1 14.6 - - + -
561G GLY* 2.6 24.9 + - - +
562G HIS* 3.7 5.8 - - - +
563G VAL 3.2 0.2 - - - -
564G SER* 1.3 77.4 - - - +
566G PHE* 1.3 63.6 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 566 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
562G HIS 3.6 7.5 + - - +
563G VAL 2.8 18.5 - - - +
564G SER 3.2 1.2 - - - -
565G PHE* 1.3 85.0 - - + +
567G LYS* 1.3 59.4 + - - +
568G GLU* 3.1 18.4 + - + +
569G SER* 3.4 11.3 + - - +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il