Contacts of the helix formed by residues 514 - 566 (chain H) in PDB entry 6BAA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TRP 514 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509H LEU* 2.9 22.3 + - + +
512H TYR* 3.2 11.2 - - + -
513H ALA* 1.3 73.7 - - - +
515H GLU* 1.3 60.9 + - - +
516H SER 3.3 2.4 + - - -
517H ILE* 3.9 15.0 + - + +
518H PHE* 3.9 11.4 + - - +
1442H PRO* 3.6 33.7 - - + +
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Residues in contact with GLU 515 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509H LEU* 4.2 14.9 + - + +
510H LYS* 6.4 0.4 - - - -
513H ALA* 3.3 6.0 - - - -
514H TRP* 1.3 77.0 - - - +
516H SER* 1.3 59.7 + - - +
518H PHE* 3.4 4.3 + - - +
519H CYS* 2.9 31.2 + - - +
1106H ILE* 4.5 24.7 - - + +
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Residues in contact with SER 516 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
513H ALA 4.6 4.9 + - - -
514H TRP 3.3 0.6 - - - -
515H GLU* 1.3 77.1 - - - +
517H ILE* 1.3 59.6 + - - +
519H CYS* 3.5 6.3 + - - +
520H SER* 2.9 28.8 + - - -
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Residues in contact with ILE 517 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
514H TRP* 3.9 13.7 + - + +
515H GLU 3.3 0.4 - - - -
516H SER* 1.3 78.4 - - - +
518H PHE* 1.3 58.8 + - + +
520H SER* 3.1 9.4 + - - -
521H ARG* 3.0 23.4 + - - +
1441H ASP 5.3 7.4 - - - +
1442H PRO 6.4 1.1 - - - -
1444H LYS* 4.6 21.3 - - + -
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Residues in contact with PHE 518 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502H MET* 4.7 19.9 - - + +
514H TRP 3.9 8.4 + - - +
515H GLU* 3.4 6.3 + - - +
516H SER 3.3 0.4 - - - -
517H ILE* 1.3 78.4 - - + +
519H CYS* 1.3 61.6 + - - +
521H ARG* 3.2 11.0 + - + +
522H VAL* 2.9 25.3 + - - +
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Residues in contact with CYS 519 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
515H GLU 2.9 19.4 + - - +
516H SER* 3.8 6.3 - - - +
518H PHE* 1.3 76.8 - - - +
520H SER* 1.3 57.3 + - - +
522H VAL* 3.3 10.2 - - + +
523H GLU* 2.8 26.3 + - - +
1102H LEU* 5.8 9.0 - - + +
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Residues in contact with SER 520 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516H SER 2.9 14.9 + - - -
517H ILE* 3.1 13.2 + - - -
519H CYS* 1.3 75.4 - - - +
521H ARG* 1.3 60.2 + - - +
523H GLU* 3.1 9.3 + - - +
524H VAL* 2.9 27.7 + - - +
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Residues in contact with ARG 521 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498H GLN* 6.2 4.9 - - + -
517H ILE 3.0 12.0 + - - +
518H PHE* 3.3 15.0 - - + +
520H SER* 1.3 73.4 - - - +
522H VAL* 1.3 64.4 + - - +
524H VAL* 3.2 8.8 + - - +
525H THR* 3.0 24.6 + - - -
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Residues in contact with VAL 522 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495H ARG* 5.8 2.5 - - - +
518H PHE 2.9 13.3 + - - +
519H CYS* 3.3 14.6 - - + +
521H ARG* 1.3 74.1 - - - +
523H GLU* 1.3 58.8 + - - +
525H THR* 3.4 5.1 + - - -
526H ARG* 2.8 32.7 + - - +
1102H LEU* 6.1 4.9 - - + -
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Residues in contact with GLU 523 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519H CYS 2.8 14.3 + - - +
520H SER* 3.1 13.0 + - - +
522H VAL* 1.3 75.6 - - - +
524H VAL* 1.3 56.7 + - - +
526H ARG* 3.3 7.0 + - - +
527H ARG* 2.8 31.0 + - - +
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Residues in contact with VAL 524 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
520H SER 2.9 13.1 + - - +
521H ARG* 3.2 11.9 + - - +
523H GLU* 1.3 75.4 - - - +
525H THR* 1.3 62.8 - - - +
527H ARG* 3.1 7.9 + - - +
528H LYS* 3.1 20.3 + - - +
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Residues in contact with THR 525 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491H HIS* 4.7 7.6 - - - +
494H GLU* 5.2 6.3 - - - -
495H ARG* 4.2 29.7 - - - +
498H GLN* 6.3 1.8 - - - -
521H ARG 3.0 15.4 + - - -
522H VAL* 4.0 4.7 - - - -
524H VAL* 1.3 75.8 - - - +
526H ARG* 1.3 56.1 + - - +
528H LYS* 3.3 9.0 + - - +
529H GLU* 2.9 26.0 + - - +
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Residues in contact with ARG 526 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495H ARG* 5.4 2.4 - - - +
522H VAL 2.8 20.5 + - - +
523H GLU* 3.5 9.2 - - - +
524H VAL 3.2 0.2 - - - -
525H THR* 1.3 75.2 - - - +
527H ARG* 1.3 59.4 + - - +
529H GLU* 3.2 10.1 + - - +
530H MET* 2.8 26.7 + - - +
1098H HIS* 5.9 7.0 - - + -
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Residues in contact with ARG 527 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
523H GLU 2.8 16.9 + - - +
524H VAL* 3.1 6.7 + - - +
526H ARG* 1.3 72.5 - - - +
528H LYS* 1.3 61.2 + - - +
530H MET* 3.1 10.0 + - - +
531H THR* 3.0 26.0 + - - -
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Residues in contact with LYS 528 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491H HIS* 2.9 42.5 + - + +
524H VAL 3.1 11.6 + - - +
525H THR* 3.5 12.6 - - - +
526H ARG 3.3 0.2 - - - -
527H ARG* 1.3 77.5 - - - +
529H GLU* 1.3 60.8 + - - +
531H THR* 3.2 8.4 + - - -
532H SER 3.1 14.9 + - - -
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Residues in contact with GLU 529 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488H THR* 5.3 6.9 - - + +
491H HIS* 3.6 17.8 + - + -
492H SER* 5.8 2.0 - - - +
525H THR 2.9 14.7 + - - +
526H ARG* 3.3 13.5 - - - +
528H LYS* 1.3 76.8 - - - +
530H MET* 1.3 56.4 + - - +
532H SER* 3.2 6.7 + - - -
533H LEU* 2.8 28.3 + - - +
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Residues in contact with MET 530 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526H ARG 2.8 16.1 + - - +
527H ARG* 3.1 13.6 + - - +
529H GLU* 1.3 70.0 - - - +
531H THR* 1.3 61.2 + - - +
533H LEU* 3.7 8.0 - - - +
534H ARG* 2.9 28.9 + - - +
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Residues in contact with THR 531 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491H HIS* 5.4 2.9 - - - -
527H ARG 3.0 11.8 + - - -
528H LYS* 3.2 13.2 + - - -
530H MET* 1.3 75.4 - - - +
532H SER* 1.3 62.3 + - - +
534H ARG* 3.3 8.3 + - - +
535H ALA* 3.1 19.8 + - - +
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Residues in contact with SER 532 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484H ALA* 4.7 4.1 - - - +
487H THR* 4.3 11.2 - - - -
488H THR* 3.3 43.1 + - - -
491H HIS* 4.3 7.6 - - - -
528H LYS 3.1 9.6 + - - -
529H GLU* 3.2 8.5 + - - -
531H THR* 1.3 79.1 - - - +
533H LEU* 1.3 57.0 + - - +
535H ALA* 3.2 10.7 + - - +
536H PHE* 3.0 23.7 + - - +
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Residues in contact with LEU 533 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488H THR* 5.5 3.3 - - + +
529H GLU 2.8 19.9 + - - +
530H MET* 3.8 9.0 - - - +
531H THR 3.2 0.2 - - - -
532H SER* 1.3 71.6 - - - +
534H ARG* 1.3 60.6 + - - +
536H PHE* 3.3 9.6 + - + +
537H ALA* 2.8 26.5 + - - +
1091H LEU* 5.9 9.9 - - + +
1094H ALA* 6.3 3.1 - - + -
1133H ASP* 5.6 14.4 - - + +
1134H GLN* 6.0 3.4 - - - +
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Residues in contact with ARG 534 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
530H MET 2.9 16.7 + - - +
531H THR* 3.3 7.4 + - - +
533H LEU* 1.3 74.6 - - - +
535H ALA* 1.3 60.5 + - - +
537H ALA* 3.2 8.9 + - - +
538H VAL* 2.9 28.2 + - - +
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Residues in contact with ALA 535 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480H LYS* 5.9 10.3 - - - +
484H ALA* 4.1 20.0 - - + -
531H THR 3.1 11.9 + - - +
532H SER* 3.2 12.3 + - - +
534H ARG* 1.3 75.7 - - - +
536H PHE* 1.3 62.2 + - - +
538H VAL* 3.3 8.4 + - - +
539H TYR* 3.0 23.7 + - - +
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Residues in contact with PHE 536 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481H LEU* 5.2 13.8 - - + +
484H ALA* 4.9 5.1 - - + +
485H GLN* 6.2 0.9 - - - +
488H THR* 5.9 1.6 - - - +
532H SER 3.0 12.6 + - - +
533H LEU* 3.4 13.5 - - + +
534H ARG 3.3 0.2 - - - -
535H ALA* 1.3 75.3 - - - +
537H ALA* 1.3 56.9 + - - +
539H TYR* 3.3 4.5 + - - +
540H THR* 2.9 34.3 + - - -
1133H ASP 5.4 4.3 - - - +
1134H GLN* 5.2 14.4 - - - +
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Residues in contact with ALA 537 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
533H LEU 2.8 14.7 + - - +
534H ARG* 3.2 13.2 + - - +
536H PHE* 1.3 75.2 - - - +
538H VAL* 1.3 63.7 + - - +
540H THR* 4.0 2.0 - - - -
541H SER* 3.0 27.8 + - - -
1087H GLU* 3.6 34.4 - - + +
1088H TRP* 5.9 0.2 - - - -
1091H LEU* 5.8 4.0 - - + -
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Residues in contact with VAL 538 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480H LYS* 6.2 3.6 - - - -
534H ARG 2.9 12.7 + - - +
535H ALA* 3.4 12.3 - - - +
537H ALA* 1.3 77.2 - - - +
539H TYR* 1.3 58.8 + - + +
541H SER* 3.9 4.0 - - - -
542H ILE* 3.0 30.0 + - - +
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Residues in contact with TYR 539 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477H VAL* 3.6 18.6 - - + +
480H LYS* 5.5 10.5 - - + -
481H LEU* 4.7 22.7 - - + +
535H ALA 3.0 15.3 + - - +
536H PHE 3.3 3.1 + - - +
538H VAL* 1.3 77.6 - - - +
540H THR* 1.3 57.7 + - - +
542H ILE* 3.2 11.0 - - - +
543H SER* 3.0 31.8 + - - -
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Residues in contact with THR 540 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481H LEU* 5.9 1.1 - - - +
536H PHE 2.9 19.1 + - - -
537H ALA* 4.1 3.8 - - - -
539H TYR* 1.3 76.7 - - - +
541H SER* 1.3 59.5 + - - +
543H SER* 3.2 5.7 + - - -
544H ILE* 2.9 38.3 + - - +
1087H GLU* 5.6 3.4 - - - -
1138H SER* 5.5 10.5 - - - -
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Residues in contact with SER 541 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537H ALA 3.0 19.6 + - - -
538H VAL* 3.9 4.3 - - - -
540H THR* 1.3 77.7 - - - +
542H ILE* 1.3 57.4 + - - +
545H PHE* 2.9 31.1 + - - +
1080H LEU* 5.1 2.8 - - - +
1083H SER* 3.8 36.2 - - - -
1084H VAL* 4.1 12.3 - - - -
1087H GLU* 4.8 2.4 - - - +
1141H GLU* 6.0 0.2 - - - -
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Residues in contact with ILE 542 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473H VAL* 5.7 0.7 - - + -
477H VAL* 3.7 29.8 - - + -
538H VAL 3.0 17.2 + - - +
539H TYR* 3.2 19.5 - - - +
541H SER* 1.3 76.5 - - - +
543H SER* 1.3 56.8 + - - +
545H PHE* 3.8 14.5 - - + +
546H MET* 3.0 58.5 + - + +
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Residues in contact with SER 543 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474H GLN* 5.9 1.4 - - - -
477H VAL* 3.2 20.0 - - - +
539H TYR 3.0 19.2 + - - -
540H THR* 3.2 6.9 + - - -
542H ILE* 1.3 77.3 - - - +
544H ILE* 1.3 61.2 + - - +
546H MET* 3.3 7.0 + - - +
547H ASN* 2.8 41.7 + - - +
591H PHE* 6.1 1.1 - - - -
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Residues in contact with ILE 544 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540H THR* 2.9 20.6 + - - +
543H SER* 1.3 81.4 - - - +
545H PHE* 1.3 57.7 + - - +
547H ASN* 3.3 13.1 + - + +
548H THR* 2.8 38.6 + - + +
591H PHE* 6.4 0.7 - - + -
1083H SER* 4.1 8.5 - - - -
1138H SER* 5.4 15.3 - - - +
1141H GLU* 3.1 42.6 - - - +
1142H CYS* 6.0 1.6 - - + -
1145H ARG* 3.8 25.1 - - - +
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Residues in contact with PHE 545 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541H SER 2.9 18.1 + - - +
542H ILE* 3.8 21.1 - - + +
544H ILE* 1.3 74.5 - - - +
546H MET* 1.3 72.7 + - + +
548H THR* 3.2 5.7 + - - -
549H ALA* 2.9 52.2 + - + +
1078H LEU 4.5 2.9 - - - -
1079H CYS* 3.9 11.4 - - + -
1080H LEU* 3.2 49.4 - - + +
1083H SER* 4.6 1.5 - - - -
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Residues in contact with MET 546 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469H LEU 6.0 0.7 - - - +
470H LEU* 4.4 15.0 - - + -
473H VAL* 3.7 37.5 - - + -
474H GLN* 5.4 5.6 - - + -
477H VAL* 6.1 0.7 - - + -
542H ILE* 3.0 40.6 + - + +
543H SER* 3.6 9.4 - - - +
545H PHE* 1.3 87.5 - - + +
547H ASN* 1.3 60.5 + - - +
548H THR 3.0 5.5 + - - -
549H ALA* 5.3 0.2 - - - -
550H ILE* 3.1 48.4 + - - +
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Residues in contact with ASN 547 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470H LEU* 5.0 2.1 - - - +
474H GLN* 3.5 16.1 + - - +
543H SER* 2.8 30.8 + - - +
544H ILE* 3.3 15.7 + - + +
546H MET* 1.3 75.7 - - - +
548H THR* 1.3 61.1 + - + +
550H ILE* 5.5 0.7 - - - -
551H PRO* 4.3 11.5 - - - +
587H VAL* 4.9 14.8 - - + +
591H PHE* 3.2 47.1 - - - +
1145H ARG* 5.8 6.5 + - - +
----------------------------------------------------------
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Residues in contact with THR 548 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544H ILE* 2.8 33.2 + - + +
545H PHE* 3.2 12.1 + - - -
547H ASN* 1.3 81.4 - - - +
549H ALA* 1.3 61.5 + - - +
550H ILE 3.5 1.1 - - - -
551H PRO* 3.3 15.5 - - - +
552H ILE* 3.9 11.3 - - - +
1078H LEU* 6.4 0.2 - - - -
1079H CYS 5.2 4.0 + - - -
1080H LEU* 5.8 0.2 - - - -
1141H GLU* 5.7 0.7 - - - +
1145H ARG* 3.8 29.6 - - - +
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Residues in contact with ALA 549 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545H PHE* 2.9 51.9 + - + +
546H MET* 5.3 0.2 - - - -
548H THR* 1.3 73.9 + - - +
550H ILE* 1.3 67.2 + - + +
551H PRO 3.4 0.2 - - - -
552H ILE* 3.2 12.8 + - + +
553H ALA* 3.2 22.2 + - - +
1078H LEU* 4.9 10.8 - - + +
----------------------------------------------------------
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Residues in contact with ILE 550 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466H VAL* 4.5 26.0 - - + +
467H ILE* 5.5 1.6 - - + -
469H LEU* 5.7 3.4 - - + -
470H LEU* 3.7 42.8 - - + +
546H MET* 3.1 34.5 + - - +
547H ASN* 5.5 0.4 - - - -
549H ALA* 1.3 77.0 - - - +
551H PRO* 1.4 67.7 - - + +
552H ILE 3.2 0.2 + - - -
553H ALA* 3.3 8.9 + - + +
554H ALA* 3.0 24.8 + - + +
587H VAL* 5.9 4.9 - - + -
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Residues in contact with PRO 551 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547H ASN 4.3 10.8 - - - +
548H THR 3.3 20.9 - - - +
550H ILE* 1.4 93.0 - - + +
552H ILE* 1.3 63.7 + - + +
554H ALA* 4.1 6.8 - - + +
555H VAL* 3.6 19.9 + - - +
580H LEU* 5.9 1.0 - - - +
583H PHE* 5.3 10.7 - - + +
584H HIS* 5.8 9.4 - - + +
587H VAL* 3.9 31.2 - - + -
----------------------------------------------------------
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Residues in contact with ILE 552 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
548H THR 3.9 15.9 - - - +
549H ALA* 3.4 12.3 - - + +
550H ILE 3.1 0.6 - - - -
551H PRO* 1.3 79.0 - - + +
553H ALA* 1.3 63.0 + - - +
555H VAL* 3.4 4.8 + - - +
556H LEU* 3.0 29.2 + - + +
1027H LEU* 5.1 18.6 - - + -
1030H ILE* 5.9 5.4 - - + -
1075H GLY* 3.3 39.9 - - - +
1078H LEU* 4.3 20.0 - - + -
----------------------------------------------------------
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Residues in contact with ALA 553 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466H VAL* 5.4 3.4 - - + -
549H ALA 3.2 12.1 + - - +
550H ILE* 4.0 10.3 - - + +
552H ILE* 1.3 78.1 - - - +
554H ALA* 1.3 66.4 + - - +
556H LEU* 4.5 4.9 - - - -
557H ILE* 3.0 29.6 + - + +
----------------------------------------------------------
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Residues in contact with ALA 554 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462H ILE* 5.4 0.8 - - - +
463H GLY* 4.6 11.8 + - - +
466H VAL* 4.0 24.3 - - + +
550H ILE* 3.0 19.5 + - + +
551H PRO* 4.2 7.4 - - + +
553H ALA* 1.3 77.0 - - - +
555H VAL* 1.3 57.4 + - - +
557H ILE* 4.5 0.6 - - - +
558H THR* 3.0 33.9 + - - -
583H PHE* 4.7 17.7 - - + -
----------------------------------------------------------
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Residues in contact with VAL 555 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
551H PRO 3.6 15.7 + - - +
552H ILE* 3.4 4.1 + - - +
554H ALA* 1.3 78.8 - - - +
556H LEU* 1.3 63.8 + - - +
558H THR* 3.8 0.5 - - - -
559H PHE* 3.0 27.2 + - - +
580H LEU* 4.8 15.3 - - + -
583H PHE* 4.4 21.2 - - + -
----------------------------------------------------------
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Residues in contact with LEU 556 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552H ILE* 3.0 22.4 + - + +
553H ALA* 3.9 6.1 - - - +
555H VAL* 1.3 77.6 - - - +
557H ILE* 1.3 59.4 + - + +
559H PHE* 4.0 1.9 - - - +
560H VAL* 3.0 33.0 + - - +
1071H LEU* 5.4 4.9 - - - +
1072H CYS* 5.3 13.7 - - + -
1075H GLY* 5.5 4.7 - - - -
----------------------------------------------------------
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Residues in contact with ILE 557 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462H ILE* 4.5 11.4 - - + +
553H ALA* 3.0 18.6 + - + +
554H ALA* 4.5 0.9 - - - +
556H LEU* 1.3 77.0 - - + +
558H THR* 1.3 57.2 + - - +
560H VAL* 4.6 4.0 - - - -
561H GLY* 2.8 27.7 + - - -
----------------------------------------------------------
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Residues in contact with THR 558 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456H LEU* 5.3 5.8 - - - -
459H SER* 3.5 22.2 - - - -
462H ILE* 4.0 15.8 - - - +
463H GLY 4.7 1.8 - - - -
554H ALA 3.0 20.1 + - - -
555H VAL* 3.8 5.2 - - - -
557H ILE* 1.3 77.5 - - - +
559H PHE* 1.3 58.4 + - - +
561H GLY 3.9 0.2 - - - -
562H HIS* 2.9 29.6 + - - +
583H PHE* 4.5 17.5 - - - -
----------------------------------------------------------
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Residues in contact with PHE 559 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555H VAL 3.0 17.5 + - - +
556H LEU* 4.2 1.6 - - - +
558H THR* 1.3 75.8 - - - +
560H VAL* 1.3 58.4 + - - +
562H HIS* 3.3 7.5 - - - +
563H VAL* 2.9 30.0 + - - +
----------------------------------------------------------
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Residues in contact with VAL 560 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556H LEU 3.0 20.4 + - - +
557H ILE* 4.3 3.6 - - - +
559H PHE* 1.3 78.3 - - - +
561H GLY* 1.3 57.5 + - - +
563H VAL* 4.2 2.9 - - - +
564H SER* 2.8 36.4 + - - +
1068H PHE* 5.9 11.0 - - + +
1072H CYS* 6.0 6.5 - - + -
----------------------------------------------------------
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Residues in contact with GLY 561 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458H VAL* 6.3 0.2 - - - -
459H SER* 5.0 2.5 - - - -
557H ILE 2.8 19.2 + - - -
558H THR 3.9 0.7 - - - -
560H VAL* 1.3 73.0 - - - +
562H HIS* 1.3 53.3 + - - +
564H SER* 4.7 2.5 - - - -
565H PHE* 2.6 42.3 + - - +
----------------------------------------------------------
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Residues in contact with HIS 562 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456H LEU* 5.7 8.5 - - + +
458H VAL* 5.7 3.8 - - - +
459H SER* 3.7 18.5 - - - -
558H THR 2.9 19.7 + - - +
559H PHE* 3.3 9.4 - - - +
561H GLY* 1.3 80.3 - - - +
563H VAL* 1.3 61.4 + - + +
565H PHE* 3.5 7.8 + - - +
566H PHE* 3.6 13.3 + - - +
569H SER* 4.3 8.3 - - - -
----------------------------------------------------------
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Residues in contact with VAL 563 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
559H PHE 2.9 15.7 + - - +
560H VAL* 4.2 2.9 - - - +
562H HIS* 1.3 74.6 - - + +
564H SER* 1.3 63.7 + - - +
566H PHE 2.8 21.8 - - - +
567H LYS* 3.9 4.0 + - - -
569H SER* 3.9 19.5 - - - -
1064H TYR* 6.4 2.2 - - + -
----------------------------------------------------------
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Residues in contact with SER 564 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
560H VAL* 2.8 23.0 + - - -
561H GLY* 4.7 2.2 - - - -
563H VAL* 1.3 71.3 - - - +
565H PHE* 1.3 63.8 + - - +
566H PHE* 3.2 1.1 + - - -
----------------------------------------------------------
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Residues in contact with PHE 565 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458H VAL* 5.1 14.6 - - + -
561H GLY 2.6 25.1 + - - +
562H HIS* 3.7 5.8 - - - +
563H VAL 3.2 0.2 - - - -
564H SER* 1.3 77.7 - - - +
566H PHE* 1.3 63.2 + - + +
----------------------------------------------------------
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Residues in contact with PHE 566 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
562H HIS 3.6 7.8 + - - +
563H VAL 2.8 18.9 - - - +
564H SER 3.2 1.5 - - - -
565H PHE* 1.3 83.8 - - + +
567H LYS* 1.3 58.3 + - - +
568H GLU* 3.1 18.3 + - + +
569H SER* 3.4 10.5 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il