Contacts of the helix formed by residues 1062 - 1106 (chain F) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL1062 (chain F).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1061F THR* 1.3 71.6 - - - +
1063F TYR* 1.3 77.3 + - + +
1064F ALA 3.0 0.9 - - - -
1065F MET* 2.9 17.7 + - - +
1066F VAL* 3.1 18.2 + - + +
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Residues in contact with TYR1063 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1032F TRP* 3.0 40.9 - + + -
1035F LYS* 5.2 22.0 - - + -
1036F TRP* 3.3 27.4 - + + -
1061F THR* 4.5 1.7 - - - -
1062F VAL* 1.3 86.8 - - + +
1064F ALA* 1.3 56.8 + - - +
1066F VAL* 3.6 8.1 - - + -
1067F PHE* 2.8 32.8 + - - +
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Residues in contact with ALA1064 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
563F VAL* 6.1 4.9 - - + -
1036F TRP* 3.3 26.6 - - + -
1061F THR 3.3 26.2 + - - +
1062F VAL 3.0 0.8 - - - -
1063F TYR* 1.3 78.3 - - - +
1065F MET* 1.3 63.5 + - - +
1067F PHE* 3.1 10.0 - - - +
1068F THR* 2.9 29.3 + - + +
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Residues in contact with MET1065 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1061F THR 3.0 11.9 + - - +
1062F VAL* 2.9 9.2 + - - +
1064F ALA* 1.3 75.0 - - - +
1066F VAL* 1.3 59.1 + - - +
1068F THR* 2.2 32.8 + - - +
1069F VAL* 3.0 10.3 + - + +
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Residues in contact with VAL1066 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1032F TRP* 3.3 28.3 - - + -
1062F VAL* 3.1 23.3 + - + +
1063F TYR* 3.3 4.9 - - + +
1065F MET* 1.3 74.6 - - - +
1067F PHE* 1.3 59.8 + - - +
1069F VAL* 3.0 17.2 - - + +
1070F LEU* 2.8 45.5 + - + +
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Residues in contact with PHE1067 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555F VAL* 5.4 4.3 - - + -
556F LEU* 4.3 15.7 - - + -
559F PHE* 3.9 38.6 - + + -
560F VAL* 5.7 2.2 - - + -
580F LEU* 6.0 1.1 - - + -
1029F ILE* 3.6 27.4 - - + +
1030F ASP* 5.5 0.4 - - - -
1032F TRP* 3.3 23.7 - + + -
1033F LEU* 3.9 30.5 - - + -
1036F TRP* 5.8 5.8 - + + -
1063F TYR 2.8 20.6 + - - +
1064F ALA* 3.1 14.1 - - - +
1066F VAL* 1.3 76.9 - - - +
1068F THR* 1.3 61.9 + - + -
1070F LEU* 3.1 6.9 + - - +
1071F CYS* 2.9 33.5 + - - -
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Residues in contact with THR1068 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556F LEU* 3.7 34.0 - - + +
560F VAL* 4.5 11.9 - - + -
1064F ALA* 2.9 16.3 + - + +
1065F MET* 2.2 33.6 + - - +
1067F PHE* 1.3 77.1 - - + +
1069F VAL* 1.3 62.5 + - - +
1071F CYS* 3.1 5.4 + - - +
1072F SER* 2.9 21.7 + - - -
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Residues in contact with VAL1069 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1065F MET* 3.0 6.5 + - + +
1066F VAL* 3.0 38.1 + - + +
1068F THR* 1.3 82.6 + - - +
1070F LEU* 1.3 61.8 + - + +
1072F SER* 2.4 29.0 + - - +
1073F LEU* 2.9 15.1 + - - +
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Residues in contact with LEU1070 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1025F VAL* 4.1 11.9 - - + +
1028F ALA* 4.4 9.2 - - + +
1029F ILE* 3.6 44.5 - - + +
1032F TRP* 4.1 19.1 - - + -
1066F VAL* 2.8 40.5 + - + +
1067F PHE 3.3 9.2 - - - +
1069F VAL* 1.3 78.7 - - + +
1071F CYS* 1.3 65.7 + - - +
1073F LEU* 3.2 13.5 + - + +
1074F GLY* 2.9 19.9 + - - -
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Residues in contact with CYS1071 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552F ILE* 4.2 22.0 - - + +
555F VAL* 4.8 4.7 - - - -
556F LEU* 3.7 46.0 - - + -
1029F ILE* 3.3 22.5 - - - +
1067F PHE* 2.9 23.1 + - - -
1068F THR 3.3 8.3 - - - +
1070F LEU* 1.3 75.5 - - - +
1072F SER* 1.3 62.8 + - - +
1074F GLY* 3.0 4.3 + - - -
1075F ILE* 3.0 23.1 + - - +
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Residues in contact with SER1072 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556F LEU* 5.7 0.6 - - - +
1068F THR 2.9 10.3 + - - -
1069F VAL* 2.4 37.0 + - - +
1071F CYS* 1.3 75.8 - - - +
1073F LEU* 1.3 62.1 + - - +
1075F ILE* 3.0 27.3 - - - +
1076F VAL* 3.0 16.2 + - - +
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Residues in contact with LEU1073 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1025F VAL* 3.6 34.1 - - + -
1069F VAL 2.9 14.4 + - - +
1070F LEU* 3.5 15.5 - - + +
1072F SER* 1.3 76.0 + - - +
1074F GLY* 1.3 64.5 + - - +
1076F VAL* 3.1 12.2 - - + +
1077F LEU* 2.9 44.6 + - + +
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Residues in contact with GLY1074 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552F ILE* 5.2 7.4 - - - -
1022F LYS* 4.8 4.5 - - - +
1025F VAL* 4.3 12.8 - - - -
1026F LEU* 5.1 13.4 - - - +
1070F LEU 2.9 14.0 + - - -
1071F CYS* 3.0 5.1 + - - -
1073F LEU* 1.3 78.7 - - - +
1075F ILE* 1.3 56.4 + - - +
1077F LEU* 3.8 3.4 - - - +
1078F CYS* 2.9 29.8 + - - +
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Residues in contact with ILE1075 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545F PHE* 3.1 35.2 - - + -
549F ALA* 3.9 13.9 - - + +
552F ILE* 3.5 30.6 - - + +
553F ALA* 5.4 5.6 - - + -
1071F CYS 3.0 5.8 + - - +
1072F SER* 3.0 33.7 - - - +
1074F GLY* 1.3 75.9 - - - +
1076F VAL* 1.3 71.3 + - + +
1078F CYS* 3.2 5.2 + - - -
1079F LEU 3.0 17.5 + - - -
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Residues in contact with VAL1076 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545F PHE* 5.6 0.2 - - - -
1072F SER* 3.0 15.7 + - - +
1073F LEU* 3.1 24.7 - - + +
1075F ILE* 1.3 82.9 - - + +
1077F LEU* 1.3 59.4 + - + +
1079F LEU* 3.1 8.4 + - - +
1080F VAL* 3.0 28.1 + - - +
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Residues in contact with LEU1077 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1018F SER* 4.2 15.0 - - - +
1021F LEU* 3.5 24.2 - - + +
1022F LYS* 3.3 37.7 - - + +
1025F VAL* 4.9 0.4 - - + -
1073F LEU* 2.9 38.7 + - + +
1074F GLY* 3.9 3.4 - - - +
1076F VAL* 1.3 75.8 - - + +
1078F CYS* 1.3 57.0 + - - +
1080F VAL* 3.0 22.9 - - + +
1081F THR* 2.4 38.5 + - - -
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Residues in contact with CYS1078 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544F ILE* 5.0 1.3 - - - -
545F PHE* 3.5 24.0 - - + -
548F THR* 3.6 33.4 - - + +
549F ALA* 5.3 0.9 - - + -
552F ILE* 6.6 0.2 - - + -
1022F LYS* 3.5 32.0 - - - +
1074F GLY 2.9 17.4 + - - +
1075F ILE* 3.2 7.2 + - - +
1077F LEU* 1.3 77.4 - - - +
1079F LEU* 1.3 62.2 + - - +
1081F THR* 3.2 2.4 + - - -
1082F SER* 3.0 24.4 + - - -
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Residues in contact with LEU1079 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545F PHE* 3.4 45.3 - - + -
1075F ILE 3.0 8.1 + - - +
1076F VAL* 3.1 11.0 + - - +
1078F CYS* 1.3 73.4 - - - +
1080F VAL* 1.3 70.3 + - + +
1082F SER* 3.1 5.2 + - - +
1083F VAL* 3.0 44.0 + - + +
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Residues in contact with VAL1080 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1014F LEU* 4.1 23.3 - - + -
1018F SER* 4.0 6.1 - - - +
1076F VAL 3.0 8.1 + - - +
1077F LEU* 3.0 42.8 - - + +
1079F LEU* 1.3 81.8 - - + +
1081F THR* 1.3 57.1 + - - +
1083F VAL* 3.8 4.9 - - + +
1084F THR* 2.6 42.1 + - - +
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Residues in contact with THR1081 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1015F LEU* 6.0 1.0 - - - +
1018F SER* 3.3 32.6 + - - -
1019F GLN* 3.1 37.0 - - - +
1022F LYS* 3.7 14.5 - - + +
1077F LEU 2.4 25.4 + - - -
1078F CYS* 3.3 7.9 - - - -
1080F VAL* 1.3 79.6 - - - +
1082F SER* 1.3 64.9 + - - +
1084F THR* 3.1 3.3 + - - -
1085F VAL* 3.0 25.8 + - + +
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Residues in contact with SER1082 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541F SER* 3.1 22.2 + - - -
544F ILE* 3.9 29.2 - - - +
545F PHE* 3.4 20.1 - - - +
1078F CYS* 3.0 13.2 + - - -
1079F LEU 3.1 9.2 + - - -
1081F THR* 1.3 77.6 - - - +
1083F VAL* 1.3 67.0 + - - +
1085F VAL* 3.1 11.3 + - - +
1086F GLU* 3.0 19.9 + - - +
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Residues in contact with VAL1083 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541F SER* 3.6 11.9 - - - +
1079F LEU* 3.0 35.5 + - + +
1080F VAL* 3.8 5.6 - - + +
1082F SER* 1.3 85.7 + - - +
1084F THR* 1.3 64.7 + - - +
1086F GLU* 3.3 2.2 + - - +
1087F TRP* 3.0 28.5 + - + +
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Residues in contact with THR1084 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1011F LEU* 4.0 15.7 - - + +
1014F LEU* 3.2 36.6 - - + +
1015F LEU* 3.7 38.4 - - + +
1018F SER* 4.2 0.9 + - - -
1080F VAL* 2.6 25.1 + - - +
1081F THR* 3.4 5.6 - - - -
1083F VAL* 1.3 76.5 - - - +
1085F VAL* 1.3 64.4 + - - +
1087F TRP* 3.8 6.3 - - - +
1088F THR* 2.9 27.9 + - + +
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Residues in contact with VAL1085 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544F ILE* 5.5 6.3 - - + -
1015F LEU* 4.8 12.8 - - + -
1019F GLN* 4.3 17.7 - - - +
1081F THR* 3.0 21.6 + - + +
1082F SER* 3.1 10.5 + - - +
1084F THR* 1.3 74.8 - - - +
1086F GLU* 1.3 66.2 + - - +
1088F THR* 3.0 25.0 - - + +
1089F GLY* 3.0 7.4 + - - -
1136F PRO* 4.2 20.6 - - + +
1139F LEU* 5.4 7.4 - - + -
1140F GLU* 4.1 29.4 - - + +
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Residues in contact with GLU1086 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537F ALA* 3.8 25.3 - - + +
538F ILE* 5.4 0.7 - - - -
540F THR* 5.2 3.4 - - + -
541F SER* 3.6 30.1 - - - +
544F ILE* 6.6 0.2 - - + -
1082F SER 3.0 8.8 + - - +
1083F VAL* 4.0 3.4 - - - +
1085F VAL* 1.3 78.0 - - - +
1087F TRP* 1.3 62.4 + - - +
1089F GLY* 3.3 1.9 + - - -
1090F LEU* 3.0 24.1 + - - +
1136F PRO* 5.1 9.3 - - - +
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Residues in contact with TRP1087 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1010F LEU* 5.4 11.4 - - + -
1011F LEU* 3.4 31.2 - - + -
1014F LEU* 5.8 5.6 - - + -
1083F VAL* 3.0 24.2 + - + +
1084F THR* 3.9 4.5 - - - +
1086F GLU* 1.3 77.1 - - - +
1088F THR* 1.3 59.0 + - - +
1090F LEU* 3.3 12.6 + - + +
1091F LYS* 2.9 69.8 + - + +
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Residues in contact with THR1088 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003F TYR* 5.8 3.1 - - + -
1004F LEU* 5.9 0.3 - - - -
1007F ALA* 3.3 22.7 - - - +
1011F LEU* 3.5 28.4 - - + +
1012F LEU* 5.9 0.2 - - - +
1015F LEU* 4.2 19.1 - - + +
1084F THR* 2.9 17.2 + - - +
1085F VAL* 3.0 27.8 - - - +
1087F TRP* 1.3 74.9 - - - +
1089F GLY* 1.3 66.6 + - - +
1091F LYS* 3.9 0.3 - - - +
1092F VAL* 2.9 32.3 + - - +
1139F LEU* 5.3 8.3 - - + -
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Residues in contact with GLY1089 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003F TYR* 4.0 18.0 + - - -
1085F VAL 3.0 15.4 + - - -
1086F GLU 3.7 2.2 - - - -
1088F THR* 1.3 78.9 - - - +
1090F LEU* 1.3 61.5 + - - +
1092F VAL* 3.8 1.7 - - - +
1093F ALA* 3.0 25.2 + - - +
1131F ILE* 5.9 0.2 - - - +
1132F ASP* 5.7 0.3 - - - -
1136F PRO* 4.1 21.5 - - - -
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Residues in contact with LEU1090 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
530F MET* 4.4 21.8 - - + +
533F LEU* 4.4 12.1 - - + -
534F ARG* 3.4 52.3 - - + +
537F ALA* 4.3 13.5 - - + -
1086F GLU 3.0 16.7 + - - +
1087F TRP* 3.7 13.9 - - + +
1089F GLY* 1.3 77.7 - - - +
1091F LYS* 1.3 70.1 + - + +
1093F ALA* 3.3 6.6 + - - +
1094F LYS* 2.9 28.2 + - + +
1136F PRO* 5.3 0.2 - - - +
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Residues in contact with LYS1091 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1006F SER 4.8 3.3 - - - +
1007F ALA* 5.3 3.1 - - - +
1008F GLY* 5.0 7.2 - - - +
1011F LEU* 3.6 28.3 - - + -
1087F TRP* 2.9 60.9 + - + +
1088F THR 3.3 3.3 + - - +
1090F LEU* 1.3 80.8 - - + +
1092F VAL* 1.3 64.9 + - + +
1094F LYS* 3.3 8.0 + - + +
1095F ARG* 3.0 24.8 + - - +
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Residues in contact with VAL1092 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003F TYR* 3.3 63.5 - - + +
1004F LEU* 5.0 0.7 - - - -
1006F SER* 3.6 15.0 - - - +
1007F ALA* 3.5 27.4 - - + +
1088F THR* 2.9 25.3 + - - +
1089F GLY 3.8 2.9 - - - +
1091F LYS* 1.3 77.9 - - - +
1093F ALA* 1.3 63.1 + - - +
1095F ARG* 3.4 1.6 + - - +
1096F LEU* 2.9 35.7 + - + +
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Residues in contact with ALA1093 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526F ARG* 4.3 4.5 + - - +
530F MET* 4.8 6.3 - - + -
533F LEU* 5.7 2.9 - - + -
1089F GLY 3.0 18.5 + - - +
1090F LEU* 3.3 6.7 + - - +
1092F VAL* 1.3 74.9 - - - +
1094F LYS* 1.3 58.3 + - - +
1096F LEU* 3.3 12.6 + - - +
1097F HIS* 2.9 31.7 + - - +
1128F CYS* 5.2 1.3 - - - -
1131F ILE* 4.6 4.4 - - + +
1132F ASP* 3.6 35.4 - - + +
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Residues in contact with LYS1094 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
530F MET* 3.6 38.5 - - + +
1090F LEU* 2.9 23.4 + - + +
1091F LYS* 3.6 7.6 - - + +
1092F VAL 3.2 0.2 - - - -
1093F ALA* 1.3 74.7 - - - +
1095F ARG* 1.3 67.6 + - - +
1097F HIS* 4.0 1.5 - - - +
1098F ARG* 3.0 62.8 + - - +
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Residues in contact with ARG1095 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1006F SER* 4.3 23.3 - - - +
1091F LYS 3.0 16.5 + - - +
1092F VAL 3.8 2.9 - - - +
1094F LYS* 1.3 75.5 - - - +
1096F LEU* 1.3 64.3 + - - +
1098F ARG* 4.1 7.1 - - - +
1099F SER* 2.9 31.1 + - - -
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Residues in contact with LEU1096 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003F TYR* 4.4 5.8 - - + -
1006F SER* 3.9 17.9 - - - +
1092F VAL* 2.9 39.3 + - + +
1093F ALA* 3.5 5.2 - - - +
1095F ARG* 1.3 77.3 - - - +
1097F HIS* 1.3 64.4 + - - +
1099F SER* 4.0 1.9 - - - -
1100F LEU* 2.9 29.2 + - - +
1128F CYS* 5.8 4.0 - - - -
1131F ILE* 3.6 44.6 - - + -
1311F VAL* 4.9 12.3 - - + +
1314F ILE* 5.1 16.1 - - + +
1315F HIS* 6.1 5.8 - - + +
1318F LEU* 6.5 1.1 - - + -
----------------------------------------------------------
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Residues in contact with HIS1097 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495F ARG* 3.9 22.5 + - + -
522F VAL* 5.3 1.6 - - + -
526F ARG* 3.0 73.0 + - + +
530F MET* 5.4 0.7 - - + -
1093F ALA 2.9 14.2 + - - +
1094F LYS* 4.1 2.9 - - - +
1096F LEU* 1.3 72.2 - - - +
1098F ARG* 1.3 66.4 + - - +
1100F LEU* 3.9 4.1 - - - +
1101F LEU* 2.9 51.2 + - + +
1124F PHE* 4.1 19.0 - + - -
1128F CYS* 3.7 19.2 - - + -
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Residues in contact with ARG1098 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1094F LYS* 3.0 63.0 + - - +
1095F ARG* 4.1 5.2 - - - +
1097F HIS* 1.3 81.8 + - - +
1099F SER* 1.3 59.9 + - - +
1101F LEU* 3.3 5.2 + - - +
1102F ASN* 2.7 51.6 + - - +
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Residues in contact with SER1099 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1095F ARG* 2.9 19.7 + - - -
1096F LEU* 4.0 2.7 - - - -
1098F ARG* 1.3 78.0 - - - +
1100F LEU* 1.3 58.4 + - - +
1102F ASN* 3.6 8.1 - - - +
1103F ARG* 2.9 29.8 + - - +
1318F LEU* 3.2 26.7 - - - +
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Residues in contact with LEU1100 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1096F LEU 2.9 18.3 + - - +
1097F HIS* 3.9 3.4 - - - +
1099F SER* 1.3 75.2 - - - +
1101F LEU* 1.3 65.1 + - - +
1103F ARG* 3.3 0.9 + - + -
1104F ILE* 2.9 45.7 + - + +
1120F ILE* 6.0 0.4 - - + -
1123F ARG* 4.5 11.9 - - + +
1124F PHE* 3.5 33.2 - - + -
1128F CYS* 6.0 1.6 - - + -
1314F ILE* 3.6 49.4 - - + +
1317F LEU* 4.3 4.5 - - + -
1318F LEU* 4.1 23.3 - - + +
----------------------------------------------------------
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Residues in contact with LEU1101 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499F THR* 5.5 8.5 - - - +
502F MET* 5.3 4.7 - - - -
519F ARG* 4.3 21.8 - - + +
522F VAL* 4.5 20.4 - - + -
523F GLU* 5.2 7.6 - - + +
1097F HIS* 2.9 37.1 + - + +
1098F ARG* 3.7 5.4 - - - +
1100F LEU* 1.3 75.6 - - - +
1102F ASN* 1.3 65.2 + - - +
1104F ILE* 3.8 1.2 - - + +
1105F ILE* 3.0 54.5 + - + +
1124F PHE* 3.6 27.1 - - + -
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Residues in contact with ASN1102 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519F ARG* 2.9 36.2 + - - +
1098F ARG* 2.7 47.5 + - - +
1099F SER* 3.6 6.8 - - - +
1101F LEU* 1.3 77.9 - - - +
1103F ARG* 1.3 64.3 + - - +
1106F LEU* 3.1 41.4 + - + +
----------------------------------------------------------
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Residues in contact with ARG1103 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1099F SER 2.9 17.6 + - - +
1100F LEU 4.0 2.0 - - - +
1102F ASN* 1.3 77.2 - - - +
1104F ILE* 1.3 66.4 + - + +
1106F LEU* 3.7 6.1 + - - +
1107F ALA* 3.4 7.4 + - - +
1318F LEU* 3.7 35.0 - - + +
1320F THR* 3.1 35.7 + - + -
----------------------------------------------------------
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Residues in contact with ILE1104 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
503F LEU* 4.9 11.2 - - + -
1100F LEU* 2.9 40.6 + - + +
1101F LEU* 3.8 3.6 - - + +
1103F ARG* 1.3 77.0 - - + +
1105F ILE* 1.3 70.1 + - + +
1106F LEU 3.1 1.3 - - - -
1107F ALA* 2.8 22.8 + - + +
1111F PHE* 5.1 7.6 - - + -
1112F PHE* 3.5 18.2 - - + -
1120F ILE* 3.7 33.7 - - + -
1124F PHE* 3.8 23.8 - - + -
1317F LEU 4.1 19.3 - - - +
1320F THR* 5.8 2.0 - - - +
----------------------------------------------------------
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Residues in contact with ILE1105 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502F MET* 3.8 23.6 - - - -
503F LEU* 5.3 6.3 - - + -
506F ILE* 5.3 5.1 - - + +
509F LEU* 6.2 0.2 - - + -
510F LYS* 3.9 5.2 + - - +
515F GLU* 3.6 42.3 - - + +
519F ARG* 3.6 43.3 - - + +
1101F LEU* 3.0 35.4 + - + +
1102F ASN 4.2 2.0 - - - +
1104F ILE* 1.3 79.6 - - + +
1106F LEU* 1.3 65.3 + - + +
1107F ALA 3.2 7.3 + - - +
1112F PHE* 4.3 8.7 - - - -
----------------------------------------------------------
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Residues in contact with LEU1106 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519F ARG* 5.1 10.1 - - - +
1102F ASN* 3.1 36.3 + - + +
1103F ARG* 3.9 8.3 - - - +
1104F ILE 3.1 1.0 - - - -
1105F ILE* 1.3 85.3 - - + +
1107F ALA* 1.3 62.1 + - - +
1108F PRO* 4.1 0.2 - - - +
1320F THR* 4.8 3.1 - - + +
1321F GLU 4.6 1.9 - - - +
1323F GLU* 3.1 24.7 - - + +
1325F TYR* 3.2 37.0 + - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il