Contacts of the helix formed by residues 1062 - 1106 (chain G) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL1062 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1061G THR* 1.3 71.7 - - - +
1063G TYR* 1.3 77.2 + - + +
1064G ALA 3.0 0.9 - - - -
1065G MET* 2.9 17.5 + - - +
1066G VAL* 3.1 18.8 + - + +
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Residues in contact with TYR1063 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1032G TRP* 3.0 40.2 - + + -
1035G LYS* 5.2 22.4 - - + -
1036G TRP* 3.3 28.3 - + + -
1061G THR* 4.5 2.2 - - - -
1062G VAL* 1.3 86.1 - - + +
1064G ALA* 1.3 56.8 + - - +
1066G VAL* 3.6 8.5 - - + -
1067G PHE* 2.8 32.6 + - - +
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Residues in contact with ALA1064 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
563G VAL* 6.1 4.7 - - + -
1036G TRP* 3.3 26.4 - - + -
1061G THR 3.3 25.1 + - - +
1062G VAL 3.0 0.4 - - - -
1063G TYR* 1.3 79.4 - - - +
1065G MET* 1.3 63.1 + - - +
1067G PHE* 3.1 10.3 - - - +
1068G THR* 2.9 29.5 + - + +
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Residues in contact with MET1065 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1061G THR 3.0 12.2 + - - +
1062G VAL* 2.9 8.9 + - - +
1064G ALA* 1.3 74.7 - - - +
1066G VAL* 1.3 59.9 + - - +
1068G THR* 2.2 33.1 + - - +
1069G VAL* 3.0 10.9 + - + +
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Residues in contact with VAL1066 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1032G TRP* 3.3 29.6 - - + -
1062G VAL* 3.1 23.5 + - + +
1063G TYR* 3.3 4.7 - - + +
1065G MET* 1.3 75.3 - - - +
1067G PHE* 1.3 59.7 + - - +
1069G VAL* 3.0 17.7 - - + +
1070G LEU* 2.8 45.2 + - + +
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Residues in contact with PHE1067 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555G VAL* 5.4 4.0 - - + -
556G LEU* 4.3 15.0 - - + -
559G PHE* 3.9 38.4 - + + -
560G VAL* 5.7 2.2 - - + -
580G LEU* 6.0 1.1 - - + -
1029G ILE* 3.6 28.8 - - + +
1030G ASP* 5.5 0.4 - - - -
1032G TRP* 3.3 24.2 - + + -
1033G LEU* 3.9 32.1 - - + -
1036G TRP* 5.8 6.5 - + + -
1063G TYR 2.8 20.4 + - - +
1064G ALA* 3.1 13.9 - - - +
1066G VAL* 1.3 75.8 - - - +
1068G THR* 1.3 63.5 + - + +
1070G LEU* 3.1 6.5 + - - +
1071G CYS* 2.9 33.9 + - - -
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Residues in contact with THR1068 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556G LEU* 3.7 34.5 - - + +
560G VAL* 4.5 11.2 - - + -
1064G ALA* 2.9 16.9 + - + +
1065G MET* 2.2 35.2 + - - +
1067G PHE* 1.3 76.6 - - + +
1069G VAL* 1.3 57.5 + - - +
1071G CYS* 3.1 5.4 + - - +
1072G SER* 2.9 26.5 + - - -
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Residues in contact with VAL1069 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1065G MET* 3.0 6.7 + - + +
1066G VAL* 3.0 38.5 + - + +
1068G THR* 1.3 81.6 + - - +
1070G LEU* 1.3 61.7 + - + +
1072G SER* 2.4 28.6 + - - +
1073G LEU* 2.9 15.4 + - - +
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Residues in contact with LEU1070 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1025G VAL* 4.1 11.9 - - + +
1028G ALA* 4.4 9.0 - - + +
1029G ILE* 3.6 44.3 - - + +
1032G TRP* 4.1 18.8 - - + -
1066G VAL* 2.8 39.8 + - + +
1067G PHE 3.3 9.0 - - - +
1069G VAL* 1.3 80.2 - - + +
1071G CYS* 1.3 65.6 + - - +
1073G LEU* 3.2 12.5 + - + +
1074G GLY* 2.9 20.1 + - - -
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Residues in contact with CYS1071 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552G ILE* 4.2 22.1 - - + +
555G VAL* 4.8 5.2 - - - -
556G LEU* 3.7 46.9 - - + -
1029G ILE* 3.3 23.6 - - - +
1067G PHE* 2.9 22.7 + - - -
1068G THR 3.1 8.7 + - - +
1070G LEU* 1.3 75.5 - - - +
1072G SER* 1.3 61.7 + - - +
1074G GLY* 3.0 3.7 + - - -
1075G ILE* 3.0 23.0 + - - +
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Residues in contact with SER1072 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556G LEU* 5.7 0.2 - - - +
1068G THR 2.9 9.9 + - - -
1069G VAL* 2.4 37.2 + - - +
1071G CYS* 1.3 75.8 - - - +
1073G LEU* 1.3 61.9 + - - +
1075G ILE* 3.0 26.5 - - - +
1076G VAL* 3.0 16.5 + - - +
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Residues in contact with LEU1073 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1025G VAL* 3.6 34.5 - - + -
1069G VAL 2.9 13.7 + - - +
1070G LEU* 3.2 15.2 + - + +
1072G SER* 1.3 76.0 + - - +
1074G GLY* 1.3 62.8 + - - +
1076G VAL* 3.1 11.9 - - + +
1077G LEU* 2.9 45.3 + - + +
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Residues in contact with GLY1074 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552G ILE* 5.2 7.9 - - - -
1022G LYS* 4.8 4.2 - - - +
1025G VAL* 4.3 13.2 - - - +
1026G LEU* 5.1 12.5 - - - +
1070G LEU 2.9 14.2 + - - -
1071G CYS 3.0 4.9 + - - -
1073G LEU* 1.3 77.9 - - - +
1075G ILE* 1.3 56.5 + - - +
1077G LEU* 3.8 3.9 - - - +
1078G CYS* 2.9 30.5 + - - +
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Residues in contact with ILE1075 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545G PHE* 3.1 34.0 - - + -
549G ALA* 3.9 15.7 - - + +
552G ILE* 3.5 30.0 - - + +
553G ALA* 5.4 5.2 - - + -
1071G CYS 3.0 6.6 + - - +
1072G SER* 3.0 33.0 - - - +
1074G GLY* 1.3 75.4 - - - +
1076G VAL* 1.3 70.2 + - + +
1078G CYS* 3.2 5.3 + - - -
1079G LEU 3.0 17.5 + - - -
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Residues in contact with VAL1076 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1072G SER* 3.0 16.7 + - - +
1073G LEU* 3.1 24.7 - - + +
1075G ILE* 1.3 82.9 - - + +
1077G LEU* 1.3 58.2 + - + +
1079G LEU* 3.1 8.3 + - - +
1080G VAL* 3.0 28.3 + - - +
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Residues in contact with LEU1077 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1018G SER* 4.0 15.5 - - - +
1021G LEU* 3.5 24.5 - - + -
1022G LYS* 3.3 38.4 - - + +
1025G VAL* 4.6 1.1 - - + -
1073G LEU* 2.9 39.1 + - + +
1074G GLY 3.9 2.9 - - - +
1076G VAL* 1.3 76.8 - - + +
1078G CYS* 1.3 56.2 + - - +
1080G VAL* 3.0 23.3 - - + +
1081G THR* 2.4 38.5 + - - -
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Residues in contact with CYS1078 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544G ILE* 5.5 0.9 - - - -
545G PHE* 3.5 24.7 - - + -
548G THR* 3.6 31.4 - - - +
549G ALA* 5.3 1.1 - - + -
1022G LYS* 3.5 32.4 - - - +
1074G GLY 2.9 17.8 + - - +
1075G ILE* 3.5 8.1 - - - +
1077G LEU* 1.3 77.7 - - - +
1079G LEU* 1.3 61.8 + - - +
1081G THR* 3.2 2.6 + - - -
1082G SER* 3.0 24.9 + - - -
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Residues in contact with LEU1079 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545G PHE* 3.4 44.6 - - + -
1075G ILE 3.0 7.7 + - - +
1076G VAL* 3.1 11.6 + - - +
1078G CYS* 1.3 73.4 - - - +
1080G VAL* 1.3 69.9 + - + +
1082G SER* 3.1 5.5 + - - +
1083G VAL* 3.0 44.0 + - + +
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Residues in contact with VAL1080 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1014G LEU* 4.1 23.3 - - + -
1018G SER* 4.0 5.8 - - - +
1076G VAL 3.0 8.5 + - - +
1077G LEU* 3.0 42.6 - - + +
1079G LEU* 1.3 83.0 - - + +
1081G THR* 1.3 56.7 + - - +
1083G VAL* 3.8 5.4 - - + +
1084G THR* 2.6 43.0 + - - +
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Residues in contact with THR1081 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1015G LEU* 6.0 0.6 - - + -
1018G SER* 3.3 32.7 + - - -
1019G GLN* 3.1 37.2 - - - +
1022G LYS* 3.7 15.2 - - + +
1077G LEU 2.4 24.7 + - - -
1078G CYS* 3.3 9.6 - - - -
1079G LEU 3.1 0.2 - - - -
1080G VAL* 1.3 78.6 - - - +
1082G SER* 1.3 65.7 + - - +
1084G THR* 3.1 3.2 + - - -
1085G VAL* 3.0 25.5 + - + +
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Residues in contact with SER1082 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541G SER* 3.1 22.8 + - - -
544G ILE* 3.9 30.4 - - - +
545G PHE* 3.4 19.2 - - - +
1078G CYS* 3.0 12.6 + - - -
1079G LEU* 3.1 9.0 + - - +
1081G THR* 1.3 78.1 - - - +
1083G VAL* 1.3 67.2 + - - +
1085G VAL* 3.1 10.9 + - - +
1086G GLU* 3.0 19.4 + - - +
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Residues in contact with VAL1083 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541G SER* 3.6 12.1 - - - +
1079G LEU* 3.0 35.2 + - + +
1080G VAL* 3.8 5.8 - - + +
1082G SER* 1.3 83.8 + - - +
1084G THR* 1.3 65.0 + - - +
1085G VAL 3.3 0.2 + - - -
1086G GLU* 3.3 2.4 + - - +
1087G TRP* 3.0 28.7 + - + +
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Residues in contact with THR1084 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1011G LEU* 4.0 16.4 - - + -
1014G LEU* 3.2 36.4 - - + +
1015G LEU* 3.7 37.9 - - + +
1018G SER* 4.2 1.1 + - - -
1080G VAL* 2.6 25.3 + - - +
1081G THR* 3.4 5.2 - - - -
1083G VAL* 1.3 77.5 - - - +
1085G VAL* 1.3 62.7 + - - +
1087G TRP* 3.8 5.4 - - - +
1088G THR* 2.9 27.3 + - + +
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Residues in contact with VAL1085 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544G ILE* 5.5 6.7 - - + -
1015G LEU* 4.9 13.7 - - + -
1019G GLN* 4.3 17.9 - - - +
1081G THR* 3.0 20.0 + - + +
1082G SER* 3.1 11.0 + - - +
1084G THR* 1.3 75.6 - - - +
1086G GLU* 1.3 67.0 + - - +
1088G THR* 3.0 24.7 - - + +
1089G GLY* 3.0 7.4 + - - -
1136G PRO* 4.2 19.7 - - + +
1139G LEU* 5.4 7.6 - - + -
1140G GLU* 4.1 30.5 - - + +
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Residues in contact with GLU1086 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537G ALA* 3.8 25.4 - - + +
538G ILE* 5.1 0.7 - - - +
540G THR* 5.2 2.9 - - + -
541G SER* 3.6 30.3 - - - +
1082G SER 3.0 7.3 + - - +
1083G VAL* 4.0 3.1 - - - +
1085G VAL* 1.3 79.1 - - - +
1087G TRP* 1.3 63.5 + - - +
1089G GLY* 3.3 0.9 + - - -
1090G LEU* 3.0 24.6 + - - +
1136G PRO* 5.1 9.3 - - - +
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Residues in contact with TRP1087 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1010G LEU* 5.4 11.0 - - + -
1011G LEU* 3.4 32.3 - - + -
1014G LEU* 5.8 4.9 - - + -
1083G VAL* 3.0 23.1 + - + +
1084G THR* 3.9 4.0 - - + +
1086G GLU* 1.3 77.5 - - - +
1088G THR* 1.3 58.1 + - - +
1090G LEU* 3.3 13.1 + - + +
1091G LYS* 2.9 68.5 + - + +
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Residues in contact with THR1088 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003G TYR* 5.8 3.1 - - + -
1004G LEU* 5.9 0.2 - - - -
1007G ALA* 3.3 22.5 - - - +
1011G LEU* 3.5 28.3 - - - +
1012G LEU* 5.9 0.3 - - - +
1015G LEU* 4.2 18.7 - - + +
1084G THR* 2.9 17.6 + - + +
1085G VAL* 3.0 27.8 - - - +
1087G TRP* 1.3 75.2 - - - +
1089G GLY* 1.3 66.7 + - - +
1091G LYS* 3.9 0.4 - - - +
1092G VAL* 2.9 33.5 + - - +
1139G LEU* 5.3 8.1 - - + -
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Residues in contact with GLY1089 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003G TYR* 4.0 18.9 + - - -
1085G VAL 3.0 14.6 + - - -
1086G GLU 3.7 3.6 - - - -
1088G THR* 1.3 79.1 - - - +
1090G LEU* 1.3 61.2 + - - +
1092G VAL* 3.4 2.1 + - - +
1093G ALA* 3.0 24.1 + - - +
1131G ILE* 5.9 0.3 - - - +
1132G ASP* 5.7 0.7 - - - -
1136G PRO* 4.1 20.2 - - - -
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Residues in contact with LEU1090 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
530G MET* 4.4 22.2 - - + +
533G LEU* 4.4 12.3 - - + -
534G ARG* 3.4 52.5 - - + +
537G ALA* 4.3 13.9 - - + -
1086G GLU 3.0 16.1 + - - +
1087G TRP* 3.7 14.4 - - + +
1089G GLY* 1.3 76.2 - - - +
1091G LYS* 1.3 69.6 + - + +
1093G ALA* 3.3 6.5 + - - +
1094G LYS* 2.9 27.8 + - + +
1136G PRO* 5.3 0.2 - - - +
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Residues in contact with LYS1091 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1006G SER 4.8 2.9 - - - +
1007G ALA* 5.3 3.4 - - - +
1008G GLY* 5.0 7.6 - - - +
1011G LEU* 3.6 27.8 - - + -
1087G TRP* 2.9 60.9 + - + +
1088G THR 3.3 3.3 + - - +
1090G LEU* 1.3 79.7 - - + +
1092G VAL* 1.3 64.5 + - + +
1094G LYS* 3.3 7.9 + - + +
1095G ARG* 3.0 24.6 + - - +
----------------------------------------------------------
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Residues in contact with VAL1092 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003G TYR* 3.3 62.1 - - + +
1004G LEU* 5.0 0.4 - - - -
1006G SER* 3.6 14.8 - - - +
1007G ALA* 3.5 28.3 - - + +
1088G THR* 2.9 25.5 + - - +
1089G GLY 3.8 3.1 - - - +
1091G LYS* 1.3 78.0 - - - +
1093G ALA* 1.3 63.3 + - - +
1095G ARG* 3.4 1.6 + - - +
1096G LEU* 2.8 35.4 + - + +
----------------------------------------------------------
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Residues in contact with ALA1093 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526G ARG* 4.3 4.0 + - - +
530G MET* 4.8 4.9 - - + -
533G LEU* 5.7 3.6 - - + -
1089G GLY 3.0 18.6 + - - +
1090G LEU* 3.6 6.7 - - - +
1092G VAL* 1.3 76.4 - - - +
1094G LYS* 1.3 57.6 + - - +
1096G LEU* 3.3 11.3 + - - +
1097G HIS* 2.9 32.1 + - - +
1128G CYS* 5.2 1.9 - - - -
1131G ILE* 4.6 4.7 - - + +
1132G ASP* 3.6 35.2 - - + +
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Residues in contact with LYS1094 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
530G MET* 3.6 38.2 - - + +
1090G LEU* 2.9 23.3 + - + +
1091G LYS* 3.6 7.6 - - - +
1092G VAL 3.2 0.2 - - - -
1093G ALA* 1.3 74.3 - - - +
1095G ARG* 1.3 66.8 + - - +
1096G LEU 3.2 0.2 + - - -
1097G HIS* 4.0 1.3 - - - +
1098G ARG* 3.0 62.6 + - - +
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Residues in contact with ARG1095 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1006G SER* 4.3 23.1 - - - +
1091G LYS 3.0 16.1 + - - +
1092G VAL 3.8 2.7 - - - +
1094G LYS* 1.3 77.2 - - - +
1096G LEU* 1.3 63.3 + - - +
1098G ARG* 4.1 6.9 - - - +
1099G SER* 2.9 31.0 + - - -
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Residues in contact with LEU1096 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003G TYR* 4.4 6.1 - - + -
1006G SER* 3.9 17.7 - - - +
1092G VAL* 2.8 39.6 + - + +
1093G ALA* 3.5 4.3 - - - +
1095G ARG* 1.3 77.2 - - - +
1097G HIS* 1.3 64.6 + - - +
1099G SER* 4.0 2.3 - - - -
1100G LEU* 2.9 29.7 + - - +
1128G CYS* 5.8 3.6 - - - -
1131G ILE* 3.6 44.2 - - + -
1311G VAL* 4.9 12.1 - - + +
1314G ILE* 5.1 15.7 - - + +
1315G HIS* 6.1 5.6 - - + +
1318G LEU* 6.5 0.9 - - + -
----------------------------------------------------------
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Residues in contact with HIS1097 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495G ARG* 3.9 22.9 - - + -
522G VAL* 5.3 2.0 - - + -
526G ARG* 3.0 72.4 + - + +
530G MET* 5.4 0.4 - - + -
1093G ALA 2.9 13.4 + - - +
1094G LYS* 4.1 2.9 - - - +
1096G LEU* 1.3 73.3 - - - +
1098G ARG* 1.3 66.7 + - - +
1100G LEU* 3.9 4.2 - - - +
1101G LEU* 2.9 50.8 + - + +
1124G PHE* 4.1 19.5 - + - -
1128G CYS* 3.7 17.9 - - + -
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Residues in contact with ARG1098 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1094G LYS* 3.0 63.4 + - - +
1095G ARG* 4.1 5.0 - - - +
1097G HIS* 1.3 81.9 + - - +
1099G SER* 1.3 59.8 + - - +
1101G LEU* 3.7 4.8 - - - +
1102G ASN* 2.7 50.4 + - - +
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Residues in contact with SER1099 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1095G ARG* 2.9 19.7 + - - -
1096G LEU* 4.0 2.5 - - - -
1098G ARG* 1.3 78.1 - - - +
1100G LEU* 1.3 58.5 + - - +
1102G ASN* 3.6 8.2 - - - +
1103G ARG* 2.9 30.5 + - - +
1318G LEU* 3.2 26.8 - - - +
----------------------------------------------------------
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Residues in contact with LEU1100 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1096G LEU 2.9 18.8 + - - +
1097G HIS* 3.9 3.6 - - - +
1099G SER* 1.3 75.0 - - - +
1101G LEU* 1.3 65.3 + - - +
1103G ARG* 3.3 0.5 + - - -
1104G ILE* 2.9 45.4 + - + +
1120G ILE* 6.0 0.7 - - + -
1123G ARG* 4.5 11.4 - - + +
1124G PHE* 3.5 32.8 - - + -
1128G CYS* 6.0 1.6 - - + -
1314G ILE* 3.6 50.5 - - + +
1317G LEU* 4.3 5.2 - - + -
1318G LEU* 4.1 22.8 - - + +
----------------------------------------------------------
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Residues in contact with LEU1101 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499G THR* 5.5 8.1 - - - +
502G MET* 5.3 4.9 - - - -
519G ARG* 4.3 21.5 - - + +
522G VAL* 4.5 20.6 - - + -
523G GLU* 5.2 7.0 - - + +
1097G HIS* 2.9 36.4 + - + +
1098G ARG* 3.7 4.7 - - - +
1100G LEU* 1.3 76.1 - - - +
1102G ASN* 1.3 65.3 + - - +
1104G ILE* 5.8 0.9 - - + -
1105G ILE* 3.0 54.8 + - + +
1124G PHE* 3.6 27.2 - - + -
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Residues in contact with ASN1102 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519G ARG* 2.9 35.9 + - - +
1098G ARG* 2.7 47.6 + - - +
1099G SER* 3.6 7.4 - - - +
1101G LEU* 1.3 78.4 - - - +
1103G ARG* 1.3 62.3 + - - +
1106G LEU* 3.1 40.8 + - + +
----------------------------------------------------------
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Residues in contact with ARG1103 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1099G SER 2.9 18.0 + - - +
1100G LEU* 4.0 1.8 - - - +
1102G ASN* 1.3 77.7 - - - +
1104G ILE* 1.3 66.4 + - + +
1106G LEU* 3.7 6.1 + - - +
1107G ALA* 3.4 7.4 + - - +
1318G LEU* 3.7 34.5 - - + +
1320G THR* 3.1 35.4 + - + -
----------------------------------------------------------
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Residues in contact with ILE1104 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
503G LEU* 4.9 10.5 - - + -
1100G LEU* 2.9 41.0 + - + +
1101G LEU* 3.8 3.1 - - + +
1103G ARG* 1.3 77.0 - - + +
1105G ILE* 1.3 71.2 + - + +
1106G LEU 3.1 0.9 - - - -
1107G ALA* 2.8 23.6 + - + +
1111G PHE* 5.1 8.5 - - + -
1112G PHE* 3.5 19.0 - - + -
1120G ILE* 3.7 35.0 - - + -
1124G PHE* 3.8 24.0 - - + -
1317G LEU* 4.1 19.1 - - + +
1320G THR* 5.8 1.8 - - - +
----------------------------------------------------------
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Residues in contact with ILE1105 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502G MET* 3.8 22.7 - - - -
503G LEU* 5.3 7.0 - - + -
506G ILE* 5.3 5.7 - - + +
510G LYS* 3.9 4.7 + - - +
515G GLU* 3.6 44.3 - - + +
519G ARG* 3.6 42.6 - - + +
1101G LEU* 3.0 34.7 + - + +
1102G ASN 4.2 1.8 - - - +
1104G ILE* 1.3 78.7 - - + +
1106G LEU* 1.3 66.4 + - + +
1107G ALA 3.2 7.8 + - - +
1112G PHE* 4.3 8.3 - - - -
1325G TYR* 5.6 0.2 - - - +
----------------------------------------------------------
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Residues in contact with LEU1106 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519G ARG* 5.1 10.8 - - - +
1102G ASN* 3.1 36.8 + - + +
1103G ARG* 3.9 7.2 - - - +
1104G ILE 3.1 1.0 - - - -
1105G ILE* 1.3 85.1 - - + +
1107G ALA* 1.3 63.3 + - - +
1108G PRO* 4.1 0.2 - - - +
1320G THR* 4.9 3.8 - - + +
1321G GLU 4.6 2.1 - - - +
1323G GLU* 3.1 25.3 - - + +
1325G TYR* 3.2 37.3 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il