Contacts of the helix formed by residues 1062 - 1106 (chain H) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL1062 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1061H THR* 1.3 72.3 - - - +
1063H TYR* 1.3 76.9 + - + +
1064H ALA 3.0 1.1 - - - -
1065H MET* 2.9 17.5 + - - +
1066H VAL* 3.1 18.7 + - + +
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Residues in contact with TYR1063 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1032H TRP* 3.0 38.9 - + + -
1035H LYS* 5.2 21.6 - - + -
1036H TRP* 3.3 27.4 - + + -
1061H THR* 4.5 2.0 - - - -
1062H VAL* 1.3 86.5 - - + +
1064H ALA* 1.3 57.0 + - - +
1066H VAL* 3.6 7.9 - - + -
1067H PHE* 2.8 32.8 + - - +
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Residues in contact with ALA1064 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
563H VAL* 6.1 5.2 - - + -
1036H TRP* 3.3 26.7 - - + -
1061H THR 3.3 25.1 + - - +
1062H VAL 3.0 0.6 - - - -
1063H TYR* 1.3 78.5 - - - +
1065H MET* 1.3 62.7 + - - +
1067H PHE* 3.1 9.9 - - - +
1068H THR* 2.9 29.0 + - + +
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Residues in contact with MET1065 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1061H THR 3.0 12.0 + - - +
1062H VAL* 2.9 9.8 + - - +
1064H ALA* 1.3 76.3 - - - +
1066H VAL* 1.3 57.9 + - - +
1068H THR* 2.2 32.9 + - - +
1069H VAL* 3.0 11.2 + - + +
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Residues in contact with VAL1066 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1032H TRP* 3.3 29.4 - - + -
1062H VAL* 3.1 23.3 + - + +
1063H TYR* 3.6 4.0 - - + -
1065H MET* 1.3 75.1 - - - +
1067H PHE* 1.3 59.4 + - - +
1069H VAL* 3.0 18.4 - - + +
1070H LEU* 2.8 45.6 + - + +
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Residues in contact with PHE1067 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
555H VAL* 5.4 4.7 - - + -
556H LEU* 4.3 15.7 - - + -
559H PHE* 3.9 36.6 - + + -
560H VAL* 5.7 2.5 - - + -
580H LEU* 6.0 1.1 - - + -
1029H ILE* 3.6 28.7 - - + +
1030H ASP* 5.5 0.2 - - - -
1032H TRP* 3.3 24.3 - + + -
1033H LEU* 3.9 31.4 - - + -
1036H TRP* 5.8 6.7 - + + -
1063H TYR 2.8 20.8 + - - +
1064H ALA* 3.1 11.2 - - - +
1066H VAL* 1.3 76.7 - - - +
1068H THR* 1.3 65.0 + - + +
1070H LEU* 3.1 6.4 + - - +
1071H CYS* 2.9 34.0 + - - -
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Residues in contact with THR1068 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556H LEU* 3.7 34.0 - - + +
560H VAL* 4.5 11.4 - - + -
1064H ALA* 2.9 16.5 + - + +
1065H MET* 2.2 34.5 + - - +
1067H PHE* 1.3 76.8 - - + +
1069H VAL* 1.3 57.5 + - - +
1071H CYS* 3.1 5.1 + - - +
1072H SER* 2.9 26.9 + - - -
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Residues in contact with VAL1069 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1065H MET* 3.0 6.7 + - + +
1066H VAL* 3.0 38.1 + - + +
1068H THR* 1.3 82.4 + - - +
1070H LEU* 1.3 61.9 + - + +
1072H SER* 2.4 27.7 + - - +
1073H LEU* 2.9 15.7 + - + +
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Residues in contact with LEU1070 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1025H VAL* 4.1 11.8 - - + +
1028H ALA* 4.4 9.2 - - + -
1029H ILE* 3.6 44.0 - - + +
1032H TRP* 4.1 19.3 - - + -
1066H VAL* 2.8 39.8 + - + +
1067H PHE 3.1 9.2 + - - +
1069H VAL* 1.3 81.3 - - + +
1071H CYS* 1.3 65.1 + - - +
1073H LEU* 3.2 12.2 + - + +
1074H GLY* 2.9 19.8 + - - -
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Residues in contact with CYS1071 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552H ILE* 4.2 21.7 - - + +
555H VAL* 4.8 5.2 - - - -
556H LEU* 3.7 46.4 - - + -
1029H ILE* 3.3 23.2 - - - +
1067H PHE* 2.9 24.2 + - - -
1068H THR 3.1 8.0 + - - +
1070H LEU* 1.3 76.4 - - - +
1072H SER* 1.3 61.8 + - - +
1074H GLY* 3.0 4.4 + - - +
1075H ILE* 3.0 22.8 + - - +
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Residues in contact with SER1072 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556H LEU* 5.7 0.6 - - - +
1068H THR 2.9 9.7 + - - -
1069H VAL* 2.4 37.4 + - - +
1071H CYS* 1.3 76.6 - - - +
1073H LEU* 1.3 60.7 + - - +
1075H ILE* 3.0 28.3 - - - +
1076H VAL* 3.0 16.2 + - - +
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Residues in contact with LEU1073 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1025H VAL* 3.6 34.8 - - + -
1069H VAL 2.9 13.8 + - - +
1070H LEU* 3.5 15.3 - - + +
1072H SER* 1.3 77.2 + - - +
1074H GLY* 1.3 63.8 + - - +
1076H VAL* 3.1 12.6 - - + +
1077H LEU* 2.9 45.2 + - + +
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Residues in contact with GLY1074 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
552H ILE* 5.2 7.9 - - - -
1022H LYS* 4.8 4.4 - - - +
1025H VAL* 4.3 13.0 - - - +
1026H LEU* 5.1 13.3 - - - +
1070H LEU 2.9 15.0 + - - -
1071H CYS* 3.0 4.2 + - - -
1073H LEU* 1.3 78.8 - - - +
1075H ILE* 1.3 56.6 + - - +
1077H LEU* 3.8 3.8 - - - +
1078H CYS* 2.9 29.3 + - - +
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Residues in contact with ILE1075 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545H PHE* 3.1 34.7 - - + -
549H ALA* 3.9 14.8 - - + +
552H ILE* 3.5 31.3 - - + +
553H ALA* 5.4 5.2 - - + -
1071H CYS 3.0 6.2 + - - +
1072H SER* 3.0 33.0 - - - +
1074H GLY* 1.3 76.5 - - - +
1076H VAL* 1.3 71.0 + - + +
1078H CYS* 3.2 4.6 + - - -
1079H LEU 3.0 17.3 + - - -
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Residues in contact with VAL1076 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545H PHE* 5.6 0.2 - - - -
1072H SER* 3.0 17.6 + - - +
1073H LEU* 3.1 24.2 - - + +
1075H ILE* 1.3 82.2 - - + +
1077H LEU* 1.3 58.4 + - + +
1079H LEU* 3.1 9.5 + - - +
1080H VAL* 3.0 27.7 + - - +
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Residues in contact with LEU1077 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1018H SER* 4.0 15.0 - - - +
1021H LEU* 3.5 24.5 - - + +
1022H LYS* 3.3 38.6 - - + +
1025H VAL* 4.6 0.4 - - + -
1073H LEU* 2.9 39.1 + - + +
1074H GLY* 3.9 3.1 - - - +
1076H VAL* 1.3 76.2 - - + +
1078H CYS* 1.3 55.8 + - - +
1080H VAL* 3.0 22.7 - - + +
1081H THR* 2.4 38.3 + - - -
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Residues in contact with CYS1078 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544H ILE* 5.5 1.1 - - - -
545H PHE* 3.5 24.7 - - + -
548H THR* 3.6 32.1 - - - +
549H ALA* 5.4 0.9 - - + -
1022H LYS* 3.5 32.2 - - - +
1074H GLY 2.9 17.4 + - - +
1075H ILE* 3.5 8.1 - - - +
1077H LEU* 1.3 77.6 - - - +
1079H LEU* 1.3 61.3 + - - +
1081H THR* 3.2 2.6 + - - -
1082H SER* 3.0 24.3 + - - -
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Residues in contact with LEU1079 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
545H PHE* 3.4 45.0 - - + -
1075H ILE 3.0 7.1 + - - +
1076H VAL* 3.1 11.0 + - - +
1078H CYS* 1.3 74.7 - - - +
1080H VAL* 1.3 72.2 + - + +
1082H SER* 3.1 5.5 + - - +
1083H VAL* 3.0 43.7 + - + +
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Residues in contact with VAL1080 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1014H LEU* 4.1 23.6 - - + -
1018H SER* 4.0 5.8 - - - +
1076H VAL 3.0 7.5 + - - +
1077H LEU* 3.0 42.8 - - + +
1079H LEU* 1.3 81.8 - - + +
1081H THR* 1.3 58.0 + - - +
1083H VAL* 3.4 4.7 + - + +
1084H THR* 2.6 43.1 + - - +
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Residues in contact with THR1081 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1015H LEU* 5.4 0.4 - - - +
1018H SER* 3.3 32.6 + - - -
1019H GLN* 3.1 37.2 - - - +
1022H LYS* 3.7 15.4 - - + +
1077H LEU 2.4 24.7 + - - -
1078H CYS* 3.3 8.7 - - - -
1079H LEU 3.1 0.2 - - - -
1080H VAL* 1.3 79.1 - - - +
1082H SER* 1.3 66.5 + - - +
1084H THR* 3.1 3.7 + - - -
1085H VAL* 3.0 25.9 + - + +
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Residues in contact with SER1082 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541H SER* 3.1 22.8 + - - -
544H ILE* 3.9 29.1 - - - +
545H PHE* 3.4 19.3 - - - +
1078H CYS* 3.0 14.0 + - - -
1079H LEU* 3.1 9.2 + - - -
1081H THR* 1.3 78.2 - - - +
1083H VAL* 1.3 67.0 + - - +
1085H VAL* 3.1 11.0 + - - +
1086H GLU* 3.0 19.8 + - - +
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Residues in contact with VAL1083 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
541H SER* 3.6 12.3 - - - +
1079H LEU* 3.0 34.8 + - + +
1080H VAL* 3.8 6.1 - - + +
1082H SER* 1.3 84.6 + - - +
1084H THR* 1.3 63.9 + - - +
1086H GLU* 3.3 2.4 + - - +
1087H TRP* 3.0 28.3 + - + +
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Residues in contact with THR1084 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1011H LEU* 4.0 15.4 - - + +
1014H LEU* 3.2 36.2 - - + +
1015H LEU* 3.7 37.7 - - + +
1018H SER* 4.2 1.1 + - - -
1080H VAL* 2.6 25.4 + - - +
1081H THR* 3.4 5.8 - - - -
1083H VAL* 1.3 77.7 - - - +
1085H VAL* 1.3 65.3 + - - +
1087H TRP* 3.9 6.0 - - - +
1088H THR* 2.9 27.9 + - + +
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Residues in contact with VAL1085 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544H ILE* 5.5 6.7 - - + -
1015H LEU* 4.8 13.7 - - + -
1019H GLN* 4.3 18.2 - - - +
1081H THR* 3.0 19.6 + - + +
1082H SER* 3.1 11.2 + - - +
1084H THR* 1.3 75.7 - - - +
1086H GLU* 1.3 64.8 + - - +
1088H THR* 3.0 24.0 - - + +
1089H GLY* 3.0 7.8 + - - -
1136H PRO* 4.2 20.3 - - + +
1139H LEU* 5.4 8.1 - - + -
1140H GLU* 4.1 29.8 - - + +
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Residues in contact with GLU1086 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537H ALA* 3.8 25.6 - - + +
538H ILE* 5.4 0.7 - - - -
540H THR* 5.2 2.9 - - + -
541H SER* 3.6 30.5 - - - -
1082H SER 3.0 7.5 + - - +
1083H VAL* 4.0 3.1 - - - +
1085H VAL* 1.3 80.3 - - - +
1087H TRP* 1.3 63.8 + - - +
1089H GLY* 3.3 1.2 + - - -
1090H LEU* 3.0 24.1 + - - +
1136H PRO* 5.1 8.4 - - - +
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Residues in contact with TRP1087 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1010H LEU* 5.4 11.0 - - + -
1011H LEU* 3.4 31.6 - - + -
1014H LEU* 5.8 5.8 - - + -
1083H VAL* 3.0 23.1 + - + +
1084H THR* 3.9 4.3 - - + +
1086H GLU* 1.3 76.2 - - - +
1088H THR* 1.3 59.2 + - - +
1090H LEU* 3.3 12.6 + - + +
1091H LYS* 2.9 69.1 + - + +
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Residues in contact with THR1088 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003H TYR* 5.8 2.4 - - + -
1004H LEU* 5.9 0.2 - - - -
1007H ALA* 3.3 22.3 - - - +
1011H LEU* 3.5 29.1 - - - +
1012H LEU* 5.9 0.3 - - - +
1015H LEU* 4.2 18.3 - - + +
1084H THR* 2.9 16.3 + - + +
1085H VAL* 3.0 27.6 - - - +
1087H TRP* 1.3 75.6 - - - +
1089H GLY* 1.3 64.7 + - - +
1091H LYS* 3.9 0.5 - - - +
1092H VAL* 2.9 32.5 + - - +
1139H LEU* 5.3 8.3 - - + -
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Residues in contact with GLY1089 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003H TYR* 4.0 18.8 + - - -
1085H VAL 3.0 14.8 + - - -
1086H GLU 3.7 2.9 - - - -
1088H THR* 1.3 80.6 - - - +
1090H LEU* 1.3 60.5 + - - +
1092H VAL* 3.4 2.3 + - - +
1093H ALA* 3.0 24.1 + - - +
1131H ILE* 5.9 0.2 - - - +
1132H ASP* 5.7 0.6 - - - -
1136H PRO* 4.1 20.4 - - - -
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Residues in contact with LEU1090 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
530H MET* 4.4 21.8 - - + +
533H LEU* 4.4 11.9 - - + -
534H ARG* 3.4 51.8 - - + +
537H ALA* 4.3 14.4 - - + -
1086H GLU 3.0 16.7 + - - +
1087H TRP* 3.7 13.9 - - + +
1089H GLY* 1.3 76.3 - - - +
1091H LYS* 1.3 70.0 + - + +
1093H ALA* 3.3 7.5 + - + +
1094H LYS* 2.9 27.8 + - + +
1136H PRO* 5.3 0.6 - - - +
----------------------------------------------------------
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Residues in contact with LYS1091 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1006H SER 4.8 2.6 - - - +
1007H ALA* 5.3 3.8 - - - +
1008H GLY* 5.0 7.2 - - - +
1011H LEU* 3.6 28.0 - - + -
1087H TRP* 2.9 60.9 + - + +
1088H THR 3.9 2.7 - - - +
1090H LEU* 1.3 79.7 - - + +
1092H VAL* 1.3 63.7 + - + +
1094H LYS* 3.3 7.9 + - + +
1095H ARG* 3.0 25.5 + - - +
----------------------------------------------------------
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Residues in contact with VAL1092 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003H TYR* 3.3 62.8 - - + +
1004H LEU* 5.0 0.4 - - - -
1006H SER* 3.6 14.8 - - - +
1007H ALA* 3.5 27.8 - - + +
1088H THR* 2.9 24.2 + - - +
1089H GLY 3.8 3.6 - - - +
1091H LYS* 1.3 77.7 - - - +
1093H ALA* 1.3 63.5 + - - +
1095H ARG* 3.4 1.4 + - - +
1096H LEU* 2.9 35.8 + - + +
----------------------------------------------------------
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Residues in contact with ALA1093 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526H ARG* 4.3 4.0 + - - +
530H MET* 4.8 6.3 - - + -
533H LEU* 5.7 2.9 - - + -
1089H GLY 3.0 17.9 + - - +
1090H LEU* 3.3 7.4 + - - +
1092H VAL* 1.3 76.2 - - - +
1094H LYS* 1.3 58.3 + - - +
1096H LEU* 3.3 12.3 + - - +
1097H HIS* 2.9 31.4 + - - +
1128H CYS* 5.2 1.8 - - - -
1131H ILE* 4.6 5.1 - - + +
1132H ASP* 3.6 35.7 - - + +
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Residues in contact with LYS1094 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
530H MET* 3.6 39.6 - - + +
1090H LEU* 2.9 22.6 + - + +
1091H LYS* 3.6 7.2 - - - +
1093H ALA* 1.3 74.7 - - - +
1095H ARG* 1.3 66.8 + - - +
1096H LEU 3.2 0.2 + - - -
1097H HIS* 3.3 1.3 + - - +
1098H ARG* 3.0 62.9 + - - +
----------------------------------------------------------
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Residues in contact with ARG1095 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1006H SER* 4.3 23.3 - - - +
1091H LYS 3.0 16.5 + - - +
1092H VAL 3.8 2.9 - - - +
1094H LYS* 1.3 75.8 - - - +
1096H LEU* 1.3 62.8 + - - +
1098H ARG* 4.9 7.0 - - - +
1099H SER* 2.9 30.4 + - - -
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Residues in contact with LEU1096 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003H TYR* 4.4 5.4 - - + -
1006H SER* 3.9 18.2 - - - +
1092H VAL* 2.9 39.8 + - + +
1093H ALA* 3.5 4.5 - - - +
1094H LYS 3.2 0.2 - - - -
1095H ARG* 1.3 75.2 - - - +
1097H HIS* 1.3 64.4 + - - +
1099H SER* 4.0 2.3 - - - -
1100H LEU* 2.9 28.2 + - - +
1128H CYS* 5.8 4.0 - - - -
1131H ILE* 3.6 45.3 - - + -
1311H VAL* 4.9 11.7 - - + -
1314H ILE* 5.1 15.4 - - + +
1315H HIS* 6.1 6.3 - - + +
1318H LEU* 6.5 1.1 - - + -
----------------------------------------------------------
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Residues in contact with HIS1097 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495H ARG* 3.9 22.7 + - + -
522H VAL* 5.3 1.8 - - + -
526H ARG* 3.0 72.8 + - + +
530H MET* 5.5 0.2 - - + -
1093H ALA 2.9 14.0 + - - +
1094H LYS* 4.1 3.1 - - - +
1096H LEU* 1.3 72.7 - - - +
1098H ARG* 1.3 67.1 + - - +
1100H LEU* 3.9 4.1 - - - +
1101H LEU* 2.9 50.8 + - + +
1124H PHE* 4.1 19.6 - + - -
1128H CYS* 3.7 19.0 - - + -
----------------------------------------------------------
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Residues in contact with ARG1098 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1094H LYS* 3.0 62.6 + - - +
1095H ARG* 4.1 5.4 - - - +
1097H HIS* 1.3 83.2 + - - +
1099H SER* 1.3 59.8 + - - +
1101H LEU* 3.7 4.8 - - - +
1102H ASN* 2.7 51.0 + - - +
----------------------------------------------------------
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Residues in contact with SER1099 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1095H ARG 2.9 20.2 + - - -
1096H LEU* 4.0 2.2 - - - -
1098H ARG* 1.3 77.3 - - - +
1100H LEU* 1.3 58.0 + - - +
1102H ASN* 3.4 8.4 + - - +
1103H ARG* 2.9 29.8 + - - +
1318H LEU* 3.2 27.4 - - - +
----------------------------------------------------------
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Residues in contact with LEU1100 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1096H LEU 2.9 19.7 + - - +
1097H HIS* 3.9 3.1 - - - +
1099H SER* 1.3 73.9 - - - +
1101H LEU* 1.3 66.9 + - - +
1103H ARG 3.3 0.5 + - - -
1104H ILE* 2.9 45.3 + - + +
1120H ILE* 6.0 0.9 - - + -
1123H ARG* 4.5 11.2 - - + +
1124H PHE* 3.5 33.2 - - + -
1128H CYS* 6.0 1.6 - - + -
1314H ILE* 3.6 50.5 - - + +
1317H LEU* 4.3 4.5 - - + -
1318H LEU* 4.1 22.8 - - + +
----------------------------------------------------------
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Residues in contact with LEU1101 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499H THR* 5.5 7.6 - - - +
502H MET* 5.3 4.5 - - - -
519H ARG* 4.3 22.0 - - + +
522H VAL* 4.5 20.2 - - + -
523H GLU* 5.2 7.4 - - + +
1097H HIS* 2.9 36.5 + - + +
1098H ARG* 3.7 5.6 - - - +
1100H LEU* 1.3 74.8 - - - +
1102H ASN* 1.3 63.4 + - - +
1104H ILE* 3.8 0.6 - - + +
1105H ILE* 3.0 54.8 + - + +
1124H PHE* 3.6 28.0 - - + -
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Residues in contact with ASN1102 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519H ARG* 2.9 36.3 + - - +
1098H ARG* 2.7 48.4 + - - +
1099H SER* 3.6 7.0 - - - +
1101H LEU* 1.3 77.6 - - - +
1103H ARG* 1.3 63.1 + - - +
1106H LEU* 3.1 41.6 + - + +
----------------------------------------------------------
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Residues in contact with ARG1103 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1099H SER 2.9 17.5 + - - +
1100H LEU* 4.0 2.2 - - - +
1102H ASN* 1.3 76.5 - - - +
1104H ILE* 1.3 65.6 + - + +
1106H LEU* 3.7 6.6 + - - +
1107H ALA* 3.4 7.1 + - - +
1318H LEU* 3.7 34.1 - - + +
1320H THR* 3.1 36.1 + - + -
----------------------------------------------------------
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Residues in contact with ILE1104 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
503H LEU* 4.9 10.8 - - + -
1100H LEU* 2.9 40.8 + - + +
1101H LEU* 3.8 3.1 - - + +
1103H ARG* 1.3 75.5 - - + +
1105H ILE* 1.3 71.1 + - + +
1106H LEU 3.1 1.3 - - - -
1107H ALA* 2.8 23.8 + - + +
1111H PHE* 5.1 7.6 - - + -
1112H PHE* 3.5 18.3 - - + -
1120H ILE* 3.7 34.3 - - + -
1124H PHE* 3.8 24.5 - - + -
1317H LEU 4.1 19.5 - - - +
1320H THR* 5.8 1.8 - - - +
----------------------------------------------------------
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Residues in contact with ILE1105 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502H MET* 3.8 23.6 - - - -
503H LEU* 5.3 6.1 - - + -
506H ILE* 5.3 5.1 - - + +
510H LYS* 3.9 4.9 + - - +
515H GLU* 3.6 43.2 - - + +
519H ARG* 3.6 43.5 - - + +
1101H LEU* 3.0 36.1 + - + +
1102H ASN 4.2 2.0 - - - +
1104H ILE* 1.3 79.4 - - + +
1106H LEU* 1.3 65.4 + - + +
1107H ALA 3.2 7.4 + - - +
1112H PHE* 4.3 9.2 - - - -
1325H TYR* 5.6 0.2 - - - +
----------------------------------------------------------
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Residues in contact with LEU1106 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519H ARG* 5.1 9.9 - - - +
1102H ASN* 3.1 36.8 + - + +
1103H ARG* 3.9 7.0 - - - +
1104H ILE 3.0 1.0 + - - -
1105H ILE* 1.3 84.7 - - + +
1107H ALA* 1.3 62.5 + - - +
1108H PRO* 4.1 0.2 - - - +
1320H THR* 4.8 3.4 - - + +
1321H GLU 4.6 2.7 - - - +
1323H GLU* 3.1 24.8 - - + +
1325H TYR* 3.2 36.0 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il