Contacts of the helix formed by residues 1126 - 1160 (chain G) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER1126 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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423G ILE* 4.3 20.1 - - - +
1122G ASN* 2.8 25.1 + - - -
1125G SER* 1.3 76.5 - - - +
1127G ASP* 1.3 64.3 + - - +
1128G CYS 3.5 0.9 - - - -
1129G ASN* 3.4 7.9 - - - +
1130G THR* 2.8 38.9 + - - -
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Residues in contact with ASP1127 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1122G ASN* 3.1 8.9 + - - +
1123G ARG* 3.2 52.1 + - - +
1126G SER* 1.3 78.2 + - - +
1128G CYS* 1.3 61.3 + - - +
1130G THR* 3.3 9.6 + - - -
1131G ILE* 2.9 31.2 + - - +
1310G ALA* 4.5 10.6 - - + +
1313G ARG* 4.2 19.0 + - - -
1314G ILE* 3.5 18.2 - - + -
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Residues in contact with CYS1128 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495G ARG* 5.1 1.1 - - - +
526G ARG* 3.4 31.2 - - - -
1093G ALA* 5.2 2.0 - - - -
1096G LEU* 5.8 3.1 - - - -
1097G HIS* 3.7 25.8 - - + -
1100G LEU* 6.0 2.0 - - + -
1123G ARG 2.9 19.2 + - - +
1124G PHE* 3.7 17.7 + - + +
1126G SER 3.5 0.2 - - - -
1127G ASP* 1.3 75.7 - - - +
1129G ASN* 1.3 56.7 + - - +
1131G ILE* 3.6 7.1 - - - +
1132G ASP* 2.8 38.4 + - - +
1314G ILE* 3.8 8.2 - - + +
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Residues in contact with ASN1129 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423G ILE* 4.5 27.5 - - - +
492G SER* 5.2 8.6 + - - +
495G ARG* 5.2 5.5 - - - +
1124G PHE 4.4 0.8 + - - -
1125G SER 3.6 21.9 + - - +
1126G SER* 3.4 9.5 + - - +
1127G ASP 3.2 0.4 - - - -
1128G CYS* 1.3 74.8 - - - +
1130G THR* 1.3 66.7 + - - +
1132G ASP* 2.6 21.3 - - - +
1133G GLN* 2.4 47.6 + - - +
1134G HIS* 4.7 2.0 - - - -
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Residues in contact with THR1130 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1126G SER* 2.8 28.8 + - - -
1127G ASP* 3.4 13.2 + - - +
1129G ASN* 1.3 72.0 - - - +
1131G ILE* 1.3 70.0 + - + +
1134G HIS* 2.9 39.4 + - + +
1135G ILE* 3.6 1.7 + - + -
1306G LEU* 5.5 6.1 - - + -
1307G GLN* 4.4 28.0 - - + +
1310G ALA* 5.1 9.9 - - + -
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Residues in contact with ILE1131 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003G TYR* 4.4 8.1 - - + +
1093G ALA* 4.6 8.3 - - + -
1096G LEU* 3.6 34.1 - - + -
1127G ASP 2.9 12.6 + - - +
1128G CYS* 3.6 10.8 - - - +
1130G THR* 1.3 83.6 - - + +
1132G ASP* 1.3 63.0 + - + +
1133G GLN 3.0 2.6 + - - -
1135G ILE* 3.0 41.2 + - + +
1136G PRO* 4.0 2.1 - - - +
1307G GLN 5.2 0.9 - - - +
1310G ALA* 5.5 1.6 - - + -
1311G VAL* 3.6 35.9 - - + +
1314G ILE* 3.5 31.6 - - + -
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Residues in contact with ASP1132 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495G ARG* 5.6 0.7 + - - -
526G ARG* 3.3 32.7 + - - +
529G GLU* 4.6 4.0 - - - +
533G LEU* 3.2 39.5 - - + +
536G PHE* 5.9 0.2 - - - -
1089G GLY 5.7 0.4 - - - -
1093G ALA* 3.6 27.1 - - + +
1128G CYS* 2.8 21.2 + - - +
1129G ASN* 2.6 36.1 - - - +
1131G ILE* 1.3 75.0 - - + +
1133G GLN* 1.3 61.0 + - - +
1134G HIS 3.8 0.2 - - - -
1136G PRO* 4.9 7.5 - - - +
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Residues in contact with GLN1133 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427G GLN* 4.7 5.5 - - - +
485G GLN* 4.5 12.8 + - - +
488G THR* 4.8 10.7 - - - +
533G LEU* 4.5 7.8 - - + +
536G PHE* 4.8 17.8 - - + -
598G ARG* 3.5 19.8 + - - +
602G LYS* 3.5 26.6 + - - +
1129G ASN* 2.4 46.2 + - - +
1132G ASP* 1.3 88.4 + - - +
1134G HIS* 1.3 78.9 + - + +
1136G PRO* 4.8 4.5 - - - -
1137G SER* 5.4 0.2 - - - -
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Residues in contact with HIS1134 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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427G GLN* 5.9 0.7 - - + -
430G TRP* 3.3 37.2 - + - -
598G ARG* 5.6 2.0 - - - -
602G LYS* 3.4 29.2 + - - -
1129G ASN* 4.8 2.2 - - - -
1130G THR* 2.9 26.4 + - + +
1133G GLN* 1.3 105.1 + - + +
1135G ILE* 1.3 68.3 + - - +
1136G PRO* 3.5 3.1 - - - +
1137G SER* 3.5 12.7 + - - -
1138G THR* 3.2 21.8 + - - -
1307G GLN* 3.9 15.9 - - - +
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Residues in contact with ILE1135 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003G TYR* 3.0 37.0 - - + +
1130G THR* 4.8 1.1 - - + +
1131G ILE* 3.0 45.8 + - + +
1134G HIS* 1.3 75.9 - - - +
1136G PRO* 1.3 68.0 - - + +
1138G THR* 3.0 4.0 + - - -
1139G LEU* 2.8 30.4 + - + -
1304G MET* 5.9 2.0 - - + -
1307G GLN* 3.2 38.6 - - + +
1308G LEU* 4.6 9.9 - - + -
1311G VAL* 4.3 15.7 - - + -
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Residues in contact with PRO1136 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537G ALA* 6.5 1.1 - - + -
540G THR* 6.2 4.3 - - + -
544G ILE* 6.1 1.3 - - + -
1003G TYR* 5.0 0.2 - - - +
1085G VAL* 4.2 22.0 - - + +
1086G GLU* 5.1 7.4 - - - +
1089G GLY* 4.1 25.1 - - - -
1090G LEU 5.3 0.2 - - - +
1131G ILE 4.0 6.1 - - - +
1132G ASP* 4.9 6.7 - - - +
1133G GLN* 4.8 2.7 - - - -
1134G HIS* 3.6 6.3 - - - +
1135G ILE* 1.3 95.3 - - + +
1137G SER* 1.3 62.1 + - - +
1139G LEU* 3.9 7.8 - - + +
1140G GLU* 2.9 28.8 + - - +
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Residues in contact with SER1137 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544G ILE* 5.9 1.8 - - - -
595G SER* 5.7 6.3 - - - -
598G ARG* 2.4 41.6 + - - +
1133G GLN 5.4 0.2 - - - -
1134G HIS* 3.5 16.3 + - - -
1135G ILE 3.1 0.8 + - - -
1136G PRO* 1.3 78.8 - - - +
1138G THR* 1.3 64.3 + - - +
1140G GLU* 2.8 30.4 - - - +
1141G CYS* 2.9 16.2 + - - -
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Residues in contact with THR1138 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1134G HIS* 3.2 3.3 + - - +
1135G ILE 3.0 2.3 + - - -
1137G SER* 1.3 77.9 - - - +
1139G LEU* 1.3 58.4 + - - +
1141G CYS* 3.3 6.8 + - - +
1142G LEU* 2.9 28.8 + - - +
1300G ASN* 4.0 11.4 - - + +
1303G ASP* 4.2 8.6 - - + +
1304G MET* 3.5 41.1 - - + +
1307G GLN* 2.6 38.0 + - - +
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Residues in contact with LEU1139 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1000G CYS* 5.9 1.1 - - - -
1003G TYR* 5.0 17.3 - - + -
1015G LEU* 4.5 24.2 - - + -
1085G VAL* 5.4 7.2 - - + -
1088G THR* 5.3 8.3 - - + -
1135G ILE* 2.8 26.4 + - + +
1136G PRO* 3.9 7.6 - - + +
1138G THR* 1.3 73.9 - - - +
1140G GLU* 1.3 57.9 + - - +
1142G LEU* 3.4 5.9 + - + -
1143G SER* 2.8 36.7 + - - -
1304G MET* 3.6 35.4 - - + -
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Residues in contact with GLU1140 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544G ILE* 4.1 23.4 - - + +
591G PHE 5.7 1.2 - - - +
594G SER* 5.8 0.3 + - - -
1019G GLN* 5.7 2.0 + - - +
1085G VAL* 4.1 22.6 - - + +
1136G PRO 2.9 27.6 + - - +
1137G SER* 2.8 20.8 - - - +
1139G LEU* 1.3 74.0 - - - +
1141G CYS* 1.3 89.2 + - - +
1143G SER* 3.8 6.2 - - - -
1144G ARG* 2.9 69.9 + - - +
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Residues in contact with CYS1141 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
591G PHE 5.8 3.6 - - - -
592G LEU* 6.5 0.7 - - - -
595G SER* 6.3 3.4 - - - -
1137G SER* 2.9 20.9 + - - +
1138G THR* 3.3 6.7 + - - +
1140G GLU* 1.3 104.0 - - - +
1142G LEU* 1.3 60.4 + - - +
1144G ARG* 3.2 7.0 - - - +
1145G SER* 2.6 31.8 + - - +
1300G ASN* 3.5 27.4 - - - +
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Residues in contact with LEU1142 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1138G THR 2.9 20.5 + - - +
1139G LEU* 3.8 7.6 - - + +
1141G CYS* 1.3 72.1 - - - +
1143G SER* 1.3 59.9 - - - +
1145G SER* 3.7 2.3 - - - -
1146G THR* 2.9 48.2 + - + +
1297G MET* 5.0 4.6 - - + +
1300G ASN* 3.5 20.1 - - + +
1301G LEU* 3.5 44.6 - - + +
1304G MET* 3.5 28.3 - - + -
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Residues in contact with SER1143 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1015G LEU* 5.1 4.4 - - - +
1019G GLN* 3.0 38.9 + - - +
1139G LEU* 2.8 28.7 + - - -
1140G GLU* 3.8 5.4 - - - -
1141G CYS 3.2 0.2 - - - -
1142G LEU* 1.3 77.1 - - - +
1144G ARG* 1.3 64.0 + - - +
1146G THR* 3.3 7.4 - - - +
1147G LEU* 2.9 28.2 + - - +
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Residues in contact with ARG1144 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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544G ILE* 3.3 33.1 + - - +
547G ASN* 4.8 4.0 + - - -
548G THR* 3.5 22.6 + - - +
591G PHE* 3.6 34.4 + - - +
1019G GLN* 4.2 3.6 + - - +
1023G HIS* 4.0 22.9 - - + -
1140G GLU* 2.9 45.9 + - - +
1141G CYS* 3.2 9.4 - - - +
1143G SER* 1.3 75.7 - - - +
1145G SER* 1.3 71.3 + - - +
1148G LEU* 2.9 36.3 + - + +
1293G TYR* 6.3 5.2 - - + -
1296G TRP* 6.4 2.5 - - - -
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Residues in contact with SER1145 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1141G CYS 2.6 23.9 + - - -
1142G LEU 3.7 2.5 - - - -
1143G SER 3.2 0.2 - - - -
1144G ARG* 1.3 80.6 - - - +
1146G THR* 1.3 59.1 + - - +
1148G LEU* 3.9 3.5 - - - +
1149G CYS* 2.9 29.9 + - - +
1293G TYR* 4.1 16.6 - - - +
1296G TRP* 3.9 14.0 - - - +
1297G MET* 3.7 28.6 - - - +
1300G ASN* 3.4 13.9 + - - -
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Residues in contact with THR1146 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1142G LEU* 2.9 36.1 + - + +
1143G SER* 3.3 10.8 - - - +
1145G SER* 1.3 73.7 - - - +
1147G LEU* 1.3 67.5 + - + +
1149G CYS* 3.3 1.0 - - - +
1150G VAL* 2.9 37.6 + - - +
1297G MET* 3.4 30.3 - - - +
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Residues in contact with LEU1147 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1019G GLN* 4.2 20.9 - - + +
1020G LEU* 3.9 31.6 - - + +
1023G HIS* 3.5 38.6 - - + +
1024G MET* 5.0 3.8 - - + +
1143G SER* 2.9 18.9 + - - +
1146G THR* 1.3 81.8 - - + +
1148G LEU* 1.3 65.1 + - - +
1150G VAL* 4.5 8.7 - - + +
1151G SER* 2.9 34.2 + - - +
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Residues in contact with LEU1148 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584G HIS* 6.2 1.6 - - + -
1023G HIS* 3.2 42.6 - - + +
1026G LEU* 5.6 8.5 - - + -
1027G VAL* 6.2 2.0 - - + -
1144G ARG* 2.9 34.0 + - + +
1145G SER* 3.9 3.6 - - - +
1147G LEU* 1.3 75.3 - - - +
1149G CYS* 1.3 64.1 + - - +
1151G SER* 2.6 22.3 + - - +
1152G ALA* 2.9 12.8 + - - +
1289G MET* 3.6 38.2 - - + +
1293G TYR* 5.2 8.1 - - + -
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Residues in contact with CYS1149 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1145G SER 2.9 20.0 + - - +
1146G THR 3.3 6.7 - - - +
1148G LEU* 1.3 73.8 - - - +
1150G VAL* 1.3 70.4 + - - +
1152G ALA* 2.9 7.7 + - - +
1153G LEU* 2.9 43.4 + - - +
1290G VAL* 4.8 7.6 - - + +
1293G TYR* 5.5 4.2 - - - +
1294G LEU* 3.6 36.1 - - - +
1297G MET* 3.8 18.2 - - + -
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Residues in contact with VAL1150 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1146G THR* 2.9 31.3 + - - +
1147G LEU* 4.3 9.0 - - + +
1149G CYS* 1.3 77.5 - - + +
1151G SER* 1.3 63.0 + - - +
1153G LEU* 3.3 10.4 + - + +
1154G ALA* 2.9 25.2 + - + +
1297G MET* 5.6 1.3 - - - -
----------------------------------------------------------
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Residues in contact with SER1151 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1023G HIS* 5.1 4.3 - - - +
1024G MET* 6.1 2.9 - - - -
1027G VAL* 3.9 23.6 - - - +
1147G LEU* 2.9 24.7 + - - +
1148G LEU* 2.6 32.6 + - - +
1150G VAL* 1.3 77.9 - - - +
1152G ALA* 1.3 57.5 + - - +
1154G ALA* 3.1 9.0 + - - +
1155G VAL* 2.9 33.5 + - - +
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Residues in contact with ALA1152 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1027G VAL* 5.9 1.1 - - - -
1148G LEU 3.4 12.3 - - - +
1149G CYS 2.9 4.4 + - - -
1151G SER* 1.3 78.8 + - - +
1153G LEU* 1.3 57.8 + - - +
1155G VAL* 4.3 6.7 - - - -
1156G ILE* 2.9 36.5 + - - +
1286G TYR* 3.9 22.9 - - + +
1289G MET* 4.5 10.5 - - + -
1290G VAL* 3.6 24.0 - - + -
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Residues in contact with LEU1153 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1149G CYS* 2.9 47.2 + - - +
1150G VAL* 3.4 14.4 - - + +
1152G ALA* 1.3 75.6 - - - +
1154G ALA* 1.3 62.4 + - - +
1156G ILE* 3.1 18.2 - - + +
1157G SER* 2.9 24.7 + - - -
1163G PHE* 5.3 0.3 - - - -
1167G LEU* 3.6 38.0 - - + +
1258G VAL* 5.9 2.0 - - + -
1290G VAL* 3.7 23.3 - - + -
1294G LEU* 5.6 0.9 - - + -
----------------------------------------------------------
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Residues in contact with ALA1154 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1150G VAL* 2.9 15.8 + - + +
1151G SER* 3.5 9.6 - - - +
1153G LEU* 1.3 76.2 - - - +
1155G VAL* 1.3 59.6 + - + +
1157G SER* 2.2 27.5 + - - +
1158G TYR* 2.9 13.7 + - - +
----------------------------------------------------------
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Residues in contact with VAL1155 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1027G VAL* 3.5 33.0 - - + -
1031G TYR* 4.7 7.2 - - + -
1151G SER 2.9 24.2 + - - +
1152G ALA* 3.8 4.5 - - - +
1153G LEU 3.1 0.4 - - - -
1154G ALA* 1.3 77.5 - - + +
1156G ILE* 1.3 60.7 + - - +
1158G TYR* 2.9 7.6 + - + +
1159G VAL* 2.9 32.2 + - + +
1282G LEU* 3.8 14.6 - - + -
1286G TYR* 3.4 32.5 - - + -
----------------------------------------------------------
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Residues in contact with ILE1156 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1152G ALA 2.9 20.2 + - - +
1153G LEU* 3.1 26.7 - - + +
1155G VAL* 1.3 72.5 - - - +
1157G SER* 1.3 64.9 + - - +
1159G VAL* 3.7 8.5 - - + -
1160G THR* 3.1 31.1 + - + +
1163G PHE* 3.4 37.3 - - + +
1258G VAL* 4.4 13.5 - - + -
1262G ALA* 5.2 8.3 - - + -
1283G GLY* 3.3 29.2 - - - +
1286G TYR* 3.5 16.6 - - + -
1287G ALA* 4.0 7.2 - - + +
1290G VAL* 4.9 6.3 - - + -
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Residues in contact with SER1157 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1153G LEU 2.9 12.7 + - - -
1154G ALA* 2.2 34.6 + - - -
1156G ILE* 1.3 79.0 - - - +
1158G TYR* 1.3 55.2 + - - +
1160G THR 2.8 25.1 - - - +
1161G PRO* 3.2 9.4 - - - +
1163G PHE* 4.6 8.3 - - - -
1164G LEU* 3.4 33.2 - - - +
1167G LEU* 6.4 1.8 - - - -
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Residues in contact with TYR1158 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1031G TYR* 3.1 41.5 + + - -
1154G ALA 2.9 10.6 + - - +
1155G VAL* 2.9 12.3 + - + +
1157G SER* 1.3 83.9 + - - +
1159G VAL* 1.3 65.6 + - + +
1160G THR 3.3 0.7 + - - -
1161G PRO* 3.7 11.5 - - - +
1279G LEU* 5.9 0.2 - - + -
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Residues in contact with VAL1159 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1031G TYR* 3.8 19.7 - - + -
1155G VAL* 2.9 24.7 + - + +
1156G ILE* 3.5 15.0 - - - +
1158G TYR* 1.3 79.0 - - + +
1160G THR* 1.3 67.5 + - + +
1161G PRO* 4.0 3.2 - - - +
1266G SER* 5.2 2.7 - - - +
1269G ASN* 5.5 0.5 + - - -
1275G LEU* 4.6 19.2 - - - +
1279G LEU* 4.1 24.0 - - + +
1282G LEU* 3.6 27.8 - - + -
1283G GLY* 3.8 19.7 - - - -
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Residues in contact with THR1160 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156G ILE* 3.1 16.5 + - + +
1157G SER* 2.8 10.5 - - - +
1159G VAL* 1.3 82.1 - - + +
1161G PRO* 1.3 61.2 - - - +
1162G VAL* 2.9 9.3 + - - +
1163G PHE* 2.8 36.9 + - + +
1262G ALA* 5.0 5.2 - - + +
1265G THR* 3.2 29.0 - - + +
1266G SER* 3.9 25.4 - - - +
1269G ASN* 4.9 7.7 + - - +
1275G LEU* 6.4 0.4 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il