Contacts of the helix formed by residues 1162 - 1209 (chain E) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL1162 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1160E THR* 2.9 12.2 + - - +
1161E PRO* 1.3 85.5 - - + +
1163E PHE* 1.3 64.0 + - - +
1164E LEU 3.0 1.9 + - - -
1165E VAL* 3.3 21.1 + - + +
1166E ALA* 4.2 1.7 + - - +
1265E THR* 3.7 20.2 - - + +
1269E ASN* 5.0 11.9 - - + +
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Residues in contact with PHE1163 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1153E LEU* 5.0 0.9 - - + -
1156E ILE* 3.4 33.7 - - + +
1157E SER* 4.5 7.4 - - - -
1160E THR* 2.8 30.1 + - + +
1162E VAL* 1.3 78.1 - - - +
1164E LEU* 1.3 64.3 + - - +
1166E ALA* 3.0 9.0 + - + +
1167E LEU* 2.9 52.8 + - + -
1258E VAL* 3.8 38.8 - - + -
1261E ILE* 3.5 35.0 - - + -
1262E ALA* 4.0 14.1 - - + -
1265E THR* 5.3 4.0 - - + -
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Residues in contact with LEU1164 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1157E SER* 3.4 43.7 - - - +
1161E PRO* 3.1 28.7 - - + +
1162E VAL 3.0 1.2 + - - -
1163E PHE* 1.3 78.1 - - - +
1165E VAL* 1.3 60.3 + - + +
1167E LEU* 3.1 9.4 + - + +
1168E LEU* 3.0 40.9 + - + +
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Residues in contact with VAL1165 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1161E PRO 5.4 2.2 - - - +
1162E VAL* 3.3 13.7 + - + +
1163E PHE 3.2 0.6 - - - -
1164E LEU* 1.3 79.4 - - + +
1166E ALA* 1.3 57.8 + - - +
1168E LEU* 3.8 11.6 + - + +
1169E PRO* 3.1 25.3 - - - +
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Residues in contact with ALA1166 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1162E VAL 4.2 1.2 + - - +
1163E PHE* 3.0 14.0 + - + +
1165E VAL* 1.3 77.8 - - - +
1167E LEU* 1.3 64.4 + - - +
1169E PRO* 3.1 11.9 - - - +
1170E LEU* 3.2 20.9 - - - +
1261E ILE* 3.6 41.3 - - + -
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Residues in contact with LEU1167 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1153E LEU* 3.6 30.7 - - + +
1157E SER* 6.4 1.3 - - - -
1163E PHE* 2.9 39.4 + - + +
1164E LEU* 3.1 12.3 + - + +
1166E ALA* 1.3 78.0 - - - +
1168E LEU* 1.3 75.7 + - + +
1170E LEU* 3.2 10.8 + - + +
1171E ALA* 3.0 34.5 + - + +
1258E VAL* 5.4 6.5 - - + -
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Residues in contact with LEU1168 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1164E LEU* 3.0 27.5 + - + +
1165E VAL* 4.1 9.2 - - + +
1167E LEU* 1.3 87.4 - - + +
1169E PRO* 1.3 69.2 - - + +
1171E ALA* 3.5 5.4 + - + +
1172E ILE* 3.3 24.3 + - - +
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Residues in contact with PRO1169 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1165E VAL 3.1 27.6 - - - +
1166E ALA* 3.1 11.4 - - - +
1168E LEU* 1.3 82.4 - - + +
1170E LEU* 1.3 63.9 + - + +
1172E ILE* 3.1 11.4 + - + +
1173E VAL* 2.9 35.3 + - + +
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Residues in contact with LEU1170 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1166E ALA* 3.2 18.6 - - - +
1167E LEU* 3.2 16.7 + - + +
1169E PRO* 1.3 86.2 - - + +
1171E ALA* 1.3 57.6 + - - +
1173E VAL* 3.3 11.8 + - + +
1174E CYS* 2.9 28.8 + - - +
1254E ILE* 3.8 41.3 - - + +
1257E CYS* 4.8 9.6 - - + -
1258E VAL* 4.7 11.2 - - + -
1261E ILE* 4.7 16.8 - - + -
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Residues in contact with ALA1171 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1167E LEU* 3.0 26.5 + - + +
1168E LEU* 3.8 9.9 - - + +
1170E LEU* 1.3 76.0 - - - +
1172E ILE* 1.3 61.6 + - + +
1174E CYS* 3.4 8.5 + - - +
1175E TYR* 2.9 30.4 + - - +
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Residues in contact with ILE1172 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1168E LEU 3.3 15.9 - - - +
1169E PRO* 3.1 11.4 + - + +
1171E ALA* 1.3 77.5 - - + +
1173E VAL* 1.3 67.0 + - + +
1175E TYR* 3.2 8.9 + - + +
1176E PHE* 2.9 56.7 + - + -
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Residues in contact with VAL1173 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1169E PRO* 2.9 23.0 + - + +
1170E LEU* 3.3 13.9 + - + +
1172E ILE* 1.3 79.9 - - + +
1174E CYS* 1.3 62.9 + - - +
1176E PHE* 3.3 4.3 + - - -
1177E ILE* 2.9 44.2 + - + +
1254E ILE* 4.8 11.9 - - + -
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Residues in contact with CYS1174 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1170E LEU 2.9 13.8 + - - +
1171E ALA* 3.4 13.5 - - - +
1173E VAL* 1.3 76.6 - - - +
1175E TYR* 1.3 63.9 + - - +
1177E ILE* 3.5 8.3 - - - +
1178E GLN* 2.9 44.3 + - - +
1251E MET* 3.4 29.8 - - + -
1254E ILE* 4.4 13.4 - - + +
1294E LEU* 5.5 5.6 - - - -
1297E MET* 6.2 2.9 - - - -
1298E VAL* 5.5 0.7 - - - -
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Residues in contact with TYR1175 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1171E ALA 2.9 19.5 + - - +
1172E ILE* 3.6 10.5 - - + +
1174E CYS* 1.3 72.3 - - - +
1176E PHE* 1.3 92.9 + + - +
1178E GLN* 3.1 25.8 - - - +
1179E LYS* 3.0 60.2 + - - +
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Residues in contact with PHE1176 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1172E ILE* 2.9 42.9 + - + +
1173E VAL* 4.0 3.8 - - - +
1175E TYR* 1.3 104.8 - + - +
1177E ILE* 1.3 60.7 + - + +
1179E LYS* 3.3 10.4 + - + +
1180E TYR* 2.9 27.4 + - - +
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Residues in contact with ILE1177 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1173E VAL* 2.9 38.5 + - + +
1174E CYS* 3.5 3.8 - - - +
1176E PHE* 1.3 79.0 - - + +
1178E GLN* 1.3 61.1 + - - +
1180E TYR* 3.3 12.3 - - + +
1181E PHE* 2.9 27.0 + - - +
1246E TRP* 5.8 5.1 - - + -
1247E LEU* 3.7 16.4 - - + +
1250E ARG* 4.9 7.9 - - + -
1251E MET* 3.4 33.4 - - - -
1254E ILE* 4.4 6.1 - - + -
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Residues in contact with GLN1178 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1174E CYS* 2.9 39.3 + - - +
1175E TYR* 3.1 35.1 - - - +
1177E ILE* 1.3 83.2 - - + +
1179E LYS* 1.3 59.1 + - + +
1181E PHE* 3.3 7.0 + - - +
1182E ARG* 2.9 42.9 + - + +
1247E LEU* 4.7 9.6 - - + -
1251E MET* 5.1 2.9 - - + -
1297E MET* 6.0 1.0 - - - +
1298E VAL* 4.3 18.3 - - + +
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Residues in contact with LYS1179 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1175E TYR* 3.0 59.9 + - + +
1176E PHE* 3.7 9.6 - - + +
1178E GLN* 1.3 78.1 - - + +
1180E TYR* 1.3 63.8 + - - +
1182E ARG* 3.3 17.7 + - - +
1183E VAL* 2.9 26.2 + - + +
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Residues in contact with TYR1180 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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234E ASN 5.9 0.2 - - - -
237E ILE* 2.9 31.7 + - + -
238E LYS* 3.1 19.9 + - - +
241E HIS* 3.4 27.6 - - + -
1176E PHE 2.9 13.7 + - - +
1177E ILE* 3.3 16.6 - - + +
1178E GLN 3.2 0.2 - - - -
1179E LYS* 1.3 76.5 - - - +
1181E PHE* 1.3 65.8 + - - +
1183E VAL* 2.9 26.9 - - + +
1184E ALA* 3.1 8.6 + - + +
1246E TRP* 4.1 32.8 - + - -
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Residues in contact with PHE1181 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1177E ILE 2.9 18.9 + - - +
1178E GLN 3.3 3.6 + - - +
1180E TYR* 1.3 79.2 - - + +
1182E ARG* 1.3 66.2 + - + +
1184E ALA* 3.2 11.3 + - + +
1185E SER* 2.8 46.4 + - - -
1240E LEU* 5.3 2.2 - - + -
1243E ALA* 2.9 51.6 - - + -
1244E ASN* 3.7 15.7 - - + -
1246E TRP* 4.6 13.0 - + + -
1247E LEU* 3.4 43.3 - - + -
1302E ALA* 5.7 9.6 - - + -
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Residues in contact with ARG1182 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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996E PRO* 5.1 6.3 - - - +
1178E GLN* 2.9 32.6 + - + +
1179E LYS* 3.8 14.8 - - - +
1180E TYR 3.2 0.2 - - - -
1181E PHE* 1.3 83.1 - - + +
1183E VAL* 1.3 59.4 + - - +
1185E SER* 3.8 6.0 - - - +
1186E ARG* 2.9 75.8 + - + +
1247E LEU* 6.2 0.7 - - + -
1301E LEU* 4.4 23.8 - - - +
1302E ALA* 6.3 1.8 - - + +
1305E GLU* 4.1 27.3 + - - +
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Residues in contact with VAL1183 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240E ALA 4.6 7.9 - - - +
241E HIS* 5.1 15.0 - - + +
1179E LYS* 2.9 17.6 + - + +
1180E TYR* 2.9 33.4 - - + +
1182E ARG* 1.3 76.3 - - - +
1184E ALA* 1.3 61.0 + - + +
1186E ARG* 4.6 8.6 - - - +
1187E ASP* 4.2 13.5 + - - +
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Residues in contact with ALA1184 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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237E ILE* 4.9 13.9 - - + +
240E ALA* 4.1 28.3 - - + +
1180E TYR* 3.1 14.9 + - + +
1181E PHE* 3.4 16.6 - - + +
1182E ARG 3.1 0.2 - - - -
1183E VAL* 1.3 80.7 - - + +
1185E SER* 1.3 58.5 + - - +
1186E ARG 3.4 0.2 + - - -
1187E ASP* 3.4 7.1 + - - +
1188E LEU* 3.0 25.4 + - - +
1243E ALA* 5.8 4.7 - - + -
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Residues in contact with SER1185 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1181E PHE* 2.8 45.3 + - - -
1182E ARG* 3.1 5.8 + - - -
1184E ALA* 1.3 71.7 - - - +
1186E ARG* 1.3 62.3 + - - +
1188E LEU* 3.5 7.8 - - - +
1189E GLN* 2.8 32.1 + - - +
1240E LEU* 4.6 14.8 - - - +
1243E ALA* 5.9 2.2 - - - -
1302E ALA* 6.2 0.3 - - - +
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Residues in contact with ARG1186 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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996E PRO* 5.4 7.9 - - - +
1182E ARG* 2.9 65.1 + - + +
1183E VAL* 4.6 9.0 - - - +
1184E ALA 3.3 0.2 - - - -
1185E SER* 1.3 75.0 - - - +
1187E ASP* 1.3 65.9 + - - +
1189E GLN* 3.9 3.9 - - - +
1190E GLN* 3.0 24.7 + - - +
1305E GLU* 5.0 6.2 + - + +
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Residues in contact with ASP1187 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240E ALA* 5.6 3.8 - - + +
244E PRO* 3.4 11.8 - - - +
245E ILE* 2.5 52.9 + - + +
1183E VAL 4.2 8.2 + - - +
1184E ALA* 3.4 9.8 + - - +
1186E ARG* 1.3 77.8 - - - +
1188E LEU* 1.3 63.6 + - - +
1190E GLN* 3.4 7.3 + - - +
1191E LEU* 3.0 25.4 + - - +
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Residues in contact with LEU1188 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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245E ILE* 6.0 1.1 - - - +
1184E ALA 3.0 15.3 + - - +
1185E SER* 3.5 13.9 - - - +
1186E ARG 3.2 0.2 - - - -
1187E ASP* 1.3 77.1 - - - +
1189E GLN* 1.3 61.8 + - - +
1191E LEU* 3.0 17.2 + - + +
1192E ASP* 2.9 29.0 + - + -
1236E ALA 4.1 5.4 - - - +
1239E PHE* 3.5 34.3 - - + +
1240E LEU* 3.4 47.8 - - + +
1243E ALA* 5.4 6.1 - - + -
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Residues in contact with GLN1189 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1185E SER* 2.8 23.4 + - - +
1186E ARG* 4.0 3.6 - - - +
1188E LEU* 1.3 71.2 - - + +
1190E GLN* 1.3 65.0 + - - +
1192E ASP* 3.2 19.6 + - - +
1193E ASP* 2.9 27.6 + - + +
1196E GLN* 5.8 0.8 + - - -
1240E LEU* 4.1 25.6 - - - +
1306E LEU* 3.7 33.9 - - + +
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Residues in contact with GLN1190 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1186E ARG 3.0 17.3 + - - +
1187E ASP* 3.6 9.9 - - - +
1189E GLN* 1.3 77.2 - - - +
1191E LEU* 1.3 62.6 + - - +
1193E ASP* 3.2 18.3 + - - +
1194E THR* 3.0 30.1 + - + +
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Residues in contact with LEU1191 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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245E ILE* 5.0 10.3 - - + +
246E ASP* 4.2 32.3 - - - +
247E LEU* 4.3 12.1 - - + +
1187E ASP* 3.0 14.8 + - - +
1188E LEU* 3.0 18.0 + - + +
1190E GLN* 1.3 75.0 - - - +
1192E ASP* 1.3 56.6 + - - +
1194E THR* 3.2 11.8 - - + +
1195E THR* 2.8 43.5 + - - +
1236E ALA* 3.7 27.6 - - + -
1239E PHE* 4.5 18.8 - - + -
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Residues in contact with ASP1192 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1188E LEU* 2.9 18.3 + - + +
1189E GLN* 3.2 26.0 + - - +
1191E LEU* 1.3 76.5 - - - +
1193E ASP* 1.3 63.5 + - - +
1195E THR 3.3 1.0 + - - -
1196E GLN* 2.9 32.2 + - - +
1233E ASN* 3.5 19.2 - - - +
1236E ALA* 4.3 17.0 - - + +
1237E SER* 4.8 9.4 - - - -
1240E LEU* 4.1 17.7 - - - +
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Residues in contact with ASP1193 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1189E GLN* 2.9 17.2 + - - +
1190E GLN* 3.2 21.2 + - - +
1192E ASP* 1.3 76.1 - - - +
1194E THR* 1.3 59.1 + - - +
1196E GLN* 3.1 10.4 + - - +
1197E LEU* 3.0 46.3 + - - +
1313E ARG* 5.1 8.8 + - - -
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Residues in contact with THR1194 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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247E LEU* 6.5 0.4 - - + -
1190E GLN* 3.0 24.9 + - + +
1191E LEU* 3.2 24.0 - - + +
1193E ASP* 1.3 76.9 - - - +
1195E THR* 1.3 60.0 + - - +
1196E GLN 3.4 0.2 - - - -
1197E LEU* 4.5 11.2 - - - +
1198E PRO* 3.2 22.0 - - - +
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Residues in contact with THR1195 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247E LEU* 5.7 3.6 - - - +
1191E LEU* 2.8 30.3 + - - +
1192E ASP 3.9 3.1 - - - -
1194E THR* 1.3 80.3 - - - +
1196E GLN* 1.3 62.0 + - - +
1197E LEU 3.5 0.2 - - - -
1198E PRO* 3.6 10.3 - - - +
1199E LEU* 4.3 10.0 + - - +
1229E TYR* 4.8 2.4 - - - +
1232E SER* 3.4 48.0 - - - +
1233E ASN* 3.4 8.6 - - - +
1236E ALA* 4.3 7.6 - - + -
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Residues in contact with GLN1196 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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422E ALA 5.3 0.6 + - - -
426E ASN* 4.3 24.4 + - - +
1189E GLN* 5.8 0.9 + - - -
1192E ASP* 2.9 31.7 + - - +
1193E ASP* 3.1 8.9 + - - +
1195E THR* 1.3 78.9 - - - +
1197E LEU* 1.3 66.7 + - + +
1199E LEU* 3.2 27.6 + - + +
1200E LEU* 3.8 13.2 + - + +
1233E ASN* 4.4 16.5 - - - +
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Residues in contact with LEU1197 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1122E ASN* 5.2 12.1 - - - +
1193E ASP* 3.0 35.6 + - - +
1194E THR* 4.5 10.3 - - - +
1196E GLN* 1.3 76.8 - - + +
1198E PRO* 1.3 70.9 - - + +
1199E LEU 3.0 1.0 + - - -
1200E LEU* 3.0 18.9 + - + +
1201E SER* 3.0 23.6 + - - +
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Residues in contact with PRO1198 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1194E THR 3.2 21.8 - - - +
1195E THR* 3.6 9.4 - - - +
1196E GLN 3.6 2.9 - - - -
1197E LEU* 1.3 90.9 - - + +
1199E LEU* 1.3 56.1 + - - +
1201E SER* 3.7 11.6 - - - +
1202E HIS* 2.8 32.1 + - - +
1229E TYR* 4.2 26.7 - - + -
----------------------------------------------------------
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Residues in contact with LEU1199 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392E GLN* 4.3 19.1 - - - +
1195E THR 4.3 7.2 - - - +
1196E GLN* 3.3 17.3 - - + +
1197E LEU 3.0 0.6 + - - -
1198E PRO* 1.3 78.2 - - - +
1200E LEU* 1.3 66.9 + - + +
1202E HIS* 3.8 2.8 - - - +
1203E PHE* 2.9 41.5 + - + -
1226E LEU* 4.0 12.3 - - + -
1229E TYR* 3.6 38.1 - - + +
1230E THR* 3.9 8.3 - - - +
1233E ASN* 3.2 36.8 - - + +
----------------------------------------------------------
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Residues in contact with LEU1200 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418E CYS* 3.7 20.9 - - - +
421E VAL* 4.8 0.7 - - + -
422E ALA* 3.7 35.0 - - + -
1122E ASN* 5.2 12.1 - - - +
1196E GLN* 4.4 15.9 - - + +
1197E LEU* 3.0 17.1 + - + +
1199E LEU* 1.3 79.9 - - + +
1201E SER* 1.3 63.9 + - - +
1203E PHE* 3.3 12.2 + - + +
1204E ALA* 2.9 25.7 + - - +
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Residues in contact with SER1201 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
780E ASN* 4.0 20.7 + - - +
825E ARG* 5.1 8.7 - - - +
1197E LEU* 3.0 16.3 + - - +
1198E PRO* 3.7 13.6 - - - +
1200E LEU* 1.3 79.1 - - - +
1202E HIS* 1.3 58.0 + - - +
1204E ALA* 3.2 5.2 + - - +
1205E GLU* 2.9 33.5 + - - +
----------------------------------------------------------
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Residues in contact with HIS1202 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396E TYR* 3.0 35.3 + + - -
1198E PRO 2.8 20.9 + - - +
1199E LEU 3.9 2.2 - - - +
1201E SER* 1.3 72.9 - - - +
1203E PHE* 1.3 53.8 + + - +
1205E GLU* 3.4 11.3 + - + +
1206E THR* 2.5 48.2 + - - -
1222E PHE* 3.6 35.9 + + + -
1225E LYS* 4.6 10.5 - - + +
1226E LEU* 3.9 20.8 - - + +
1229E TYR* 3.6 24.7 + + + -
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Residues in contact with PHE1203 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392E GLN* 4.9 13.0 - - + -
395E ILE* 6.5 1.1 - - + -
396E TYR* 4.1 17.0 - + + -
399E ILE* 6.5 0.4 - - + -
418E CYS* 3.8 18.2 - - + -
421E VAL* 3.4 46.7 - - + -
1199E LEU* 2.9 36.2 + - + +
1200E LEU* 3.6 7.6 - - + +
1201E SER 3.2 0.2 - - - -
1202E HIS* 1.3 78.3 - + - +
1204E ALA* 1.3 66.0 + - - +
1206E THR* 3.1 4.1 + - - -
1207E VAL* 3.0 31.8 + - + +
1226E LEU* 3.4 45.5 - - + -
----------------------------------------------------------
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Residues in contact with ALA1204 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414E ALA* 6.5 0.9 - - - -
418E CYS* 4.8 6.8 - - + -
780E ASN* 5.3 4.5 - - - +
1200E LEU 2.9 16.7 + - - +
1201E SER* 3.6 7.0 - - - +
1203E PHE* 1.3 75.5 - - - +
1205E GLU* 1.3 58.8 - - + +
1207E VAL* 4.0 3.0 - - - +
1208E GLU* 2.9 35.5 + - - +
----------------------------------------------------------
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Residues in contact with GLU1205 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
777E TRP* 2.9 40.2 + - + -
778E LEU* 2.9 13.6 - - - +
779E LEU* 3.1 23.8 - - + +
780E ASN* 2.5 40.0 + - + +
824E GLU* 5.3 1.4 - - - +
1201E SER* 2.9 21.2 + - - +
1202E HIS* 3.5 15.7 - - + +
1204E ALA* 1.3 77.2 - - - +
1206E THR* 1.3 63.3 + - - +
1209E GLY* 2.9 22.2 + - - -
1213E ILE* 5.0 1.1 - - - -
----------------------------------------------------------
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Residues in contact with THR1206 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396E TYR* 3.3 40.0 + - + +
399E ILE* 3.6 24.0 - - + -
400E MET* 4.9 5.2 - - + -
1202E HIS* 2.5 38.6 + - - -
1203E PHE* 3.1 8.0 + - - -
1205E GLU* 1.3 73.9 - - - +
1207E VAL* 1.3 58.4 + - - +
1209E GLY 3.7 0.2 - - - -
1210E LEU* 3.1 38.7 + - + +
1213E ILE* 4.1 11.5 - - + +
----------------------------------------------------------
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Residues in contact with VAL1207 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399E ILE* 4.1 20.6 - - + -
402E LEU* 5.8 2.5 - - + -
407E LEU* 3.7 27.7 - - + +
414E ALA* 3.6 34.8 - - + +
417E ILE* 4.7 19.5 - - + -
418E CYS* 5.9 4.3 - - + +
1203E PHE* 3.0 18.1 + - + +
1204E ALA* 4.2 2.9 - - - +
1206E THR* 1.3 76.0 - - - +
1208E GLU* 1.3 66.2 + - - +
1209E GLY 3.3 0.7 + - - -
1210E LEU* 3.4 22.1 + - + +
----------------------------------------------------------
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Residues in contact with GLU1208 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414E ALA* 5.2 8.7 - - + +
775E LYS* 3.5 30.7 + - - -
777E TRP* 3.3 35.2 - - + +
1204E ALA 2.9 19.4 + - - +
1205E GLU* 4.8 0.2 - - - -
1207E VAL* 1.3 77.9 - - - +
1209E GLY* 1.3 57.7 + - - +
1210E LEU 3.5 0.6 + - - -
1211E THR* 5.7 0.3 + - - -
1479E GLU* 5.5 0.2 - - - +
----------------------------------------------------------
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Residues in contact with GLY1209 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
777E TRP* 3.4 30.6 - - - -
1205E GLU 2.9 10.7 + - - -
1206E THR 3.7 3.1 - - - -
1208E GLU* 1.3 78.6 - - - +
1210E LEU* 1.3 61.0 + - - -
1211E THR* 3.4 2.7 - - - -
1212E THR* 2.6 26.3 + - - -
1213E ILE* 3.1 14.8 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il