Contacts of the helix formed by residues 1162 - 1209 (chain F) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL1162 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1160F THR* 2.9 13.4 + - - +
1161F PRO* 1.3 83.6 - - + +
1163F PHE* 1.3 64.2 + - - +
1164F LEU 3.0 1.6 + - - -
1165F VAL* 3.3 22.0 + - + +
1166F ALA* 4.2 1.6 + - - +
1265F THR* 3.7 21.1 - - + +
1269F ASN* 5.0 11.9 - - + +
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Residues in contact with PHE1163 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1153F LEU 5.3 0.2 - - - -
1156F ILE* 3.4 33.7 - - + +
1157F SER* 4.5 7.4 - - - -
1160F THR* 2.8 29.9 + - + +
1162F VAL* 1.3 78.8 - - - +
1164F LEU* 1.3 63.8 + - - +
1165F VAL 3.2 0.2 - - - -
1166F ALA* 3.0 8.8 + - + +
1167F LEU* 2.9 54.1 + - + -
1258F VAL* 3.8 34.5 - - + -
1261F ILE* 3.5 39.3 - - + -
1262F ALA* 4.0 14.4 - - + -
1265F THR* 5.3 4.3 - - + -
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Residues in contact with LEU1164 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1157F SER* 3.4 42.4 - - - +
1161F PRO* 3.1 30.1 - - + +
1162F VAL 3.0 1.6 + - - -
1163F PHE* 1.3 78.6 - - - +
1165F VAL* 1.3 59.2 + - + +
1167F LEU* 3.1 9.4 + - + +
1168F LEU* 3.0 42.3 + - + +
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Residues in contact with VAL1165 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1161F PRO 5.4 2.0 - - - +
1162F VAL* 3.8 13.5 - - + +
1163F PHE 3.2 0.6 - - - -
1164F LEU* 1.3 79.7 - - + +
1166F ALA* 1.3 57.4 + - - +
1168F LEU* 3.8 12.1 + - + +
1169F PRO* 3.1 24.6 - - - +
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Residues in contact with ALA1166 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1162F VAL 4.2 1.4 + - - +
1163F PHE* 3.0 13.4 + - + +
1165F VAL* 1.3 77.8 - - - +
1167F LEU* 1.3 65.7 + - - +
1169F PRO* 3.1 12.2 - - - +
1170F LEU* 3.2 21.6 - - - +
1261F ILE* 3.6 39.9 - - + -
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Residues in contact with LEU1167 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1153F LEU* 3.6 31.6 - - + +
1157F SER* 6.4 2.0 - - - -
1163F PHE* 2.9 38.3 + - + +
1164F LEU* 3.1 12.8 + - + +
1166F ALA* 1.3 77.9 - - - +
1168F LEU* 1.3 75.3 + - + +
1170F LEU* 3.2 11.9 + - + +
1171F ALA* 3.0 33.7 + - + +
1258F VAL* 5.4 6.3 - - + -
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Residues in contact with LEU1168 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1164F LEU* 3.0 27.1 + - + +
1165F VAL* 4.1 9.0 - - + +
1167F LEU* 1.3 87.3 - - + +
1169F PRO* 1.3 70.0 - - + +
1171F ALA* 3.5 5.2 + - + +
1172F ILE* 3.3 23.8 + - - +
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Residues in contact with PRO1169 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1165F VAL 3.1 27.8 - - - +
1166F ALA* 3.1 11.7 - - - +
1168F LEU* 1.3 82.3 - - + +
1170F LEU* 1.3 62.7 + - + +
1172F ILE* 3.1 10.9 + - + +
1173F VAL* 2.9 36.4 + - + +
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Residues in contact with LEU1170 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1166F ALA* 3.2 17.9 - - + +
1167F LEU* 3.2 16.5 + - + +
1169F PRO* 1.3 85.8 - - + +
1171F ALA* 1.3 57.5 + - - +
1173F VAL* 3.3 11.6 + - + +
1174F CYS* 2.9 29.0 + - - +
1254F ILE* 3.8 40.1 - - + +
1257F CYS* 4.8 10.3 - - + -
1258F VAL* 4.7 11.2 - - + -
1261F ILE* 4.7 16.4 - - + -
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Residues in contact with ALA1171 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1167F LEU* 3.0 26.7 + - + +
1168F LEU* 3.8 9.2 - - + +
1169F PRO 3.2 0.2 - - - -
1170F LEU* 1.3 75.4 - - - +
1172F ILE* 1.3 62.4 + - + +
1174F CYS* 3.4 8.4 + - - +
1175F TYR* 2.9 29.5 + - - +
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Residues in contact with ILE1172 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1168F LEU 3.3 16.8 - - - +
1169F PRO* 3.1 11.4 + - + +
1171F ALA* 1.3 77.5 - - + +
1173F VAL* 1.3 66.4 + - + +
1175F TYR* 3.2 9.3 + - + +
1176F PHE* 2.9 56.3 + - + -
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Residues in contact with VAL1173 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1169F PRO* 2.9 23.0 + - + +
1170F LEU* 3.3 14.8 + - + +
1172F ILE* 1.3 77.3 - - + +
1174F CYS* 1.3 63.2 + - - +
1176F PHE* 3.3 5.5 + - - +
1177F ILE* 2.9 43.5 + - + +
1254F ILE* 4.8 11.7 - - + -
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Residues in contact with CYS1174 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1170F LEU 2.9 13.8 + - - +
1171F ALA* 3.4 12.3 - - - +
1173F VAL* 1.3 77.3 - - - +
1175F TYR* 1.3 64.1 + - - +
1177F ILE* 3.5 8.2 - - - +
1178F GLN* 2.9 44.7 + - - +
1251F MET* 3.4 30.7 - - + -
1254F ILE* 4.4 12.7 - - + +
1294F LEU* 5.5 5.4 - - - -
1297F MET* 6.2 2.5 - - - -
1298F VAL* 5.5 0.7 - - - -
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Residues in contact with TYR1175 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1171F ALA 2.9 19.1 + - - +
1172F ILE* 3.2 11.0 + - + +
1174F CYS* 1.3 73.3 - - - +
1176F PHE* 1.3 93.5 + + - +
1178F GLN* 3.1 25.6 - - - +
1179F LYS* 3.0 59.8 + - + +
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Residues in contact with PHE1176 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1172F ILE* 2.9 41.8 + - + +
1173F VAL* 4.0 4.5 - - - +
1175F TYR* 1.3 105.4 - + - +
1177F ILE* 1.3 60.2 + - + +
1179F LYS* 3.3 11.3 + - + +
1180F TYR* 2.9 26.7 + - - +
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Residues in contact with ILE1177 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1173F VAL* 2.9 39.3 + - + +
1174F CYS* 3.5 3.1 - - - +
1176F PHE* 1.3 80.2 - - + +
1178F GLN* 1.3 62.6 + - - +
1180F TYR* 3.3 12.7 - - + +
1181F PHE* 2.9 27.0 + - - +
1246F TRP* 5.8 4.5 - - + -
1247F LEU* 3.7 15.4 - - + +
1250F ARG* 4.9 8.5 - - + -
1251F MET* 3.4 32.5 - - - -
1254F ILE* 4.4 7.2 - - + -
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Residues in contact with GLN1178 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1174F CYS* 2.9 39.3 + - - +
1175F TYR* 3.1 36.1 - - - +
1177F ILE* 1.3 82.9 - - + +
1179F LYS* 1.3 60.4 + - + +
1181F PHE* 3.3 6.3 + - - +
1182F ARG* 2.9 44.6 + - + +
1247F LEU* 4.7 9.6 - - + -
1251F MET* 5.1 2.9 - - - -
1297F MET* 6.0 1.0 - - - +
1298F VAL* 4.3 18.2 - - + +
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Residues in contact with LYS1179 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1175F TYR* 3.0 58.7 + - - +
1176F PHE* 3.7 9.3 - - + +
1178F GLN* 1.3 78.2 - - + +
1180F TYR* 1.3 62.6 + - - +
1182F ARG* 3.3 16.5 + - - +
1183F VAL* 2.9 27.4 + - + +
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Residues in contact with TYR1180 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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234F ASN 5.1 0.4 + - - -
237F ILE* 2.9 31.8 + - + -
238F LYS* 3.1 20.1 + - - +
241F HIS* 3.4 27.6 - - + -
1176F PHE 2.9 14.7 + - - +
1177F ILE* 3.3 15.9 - - + +
1179F LYS* 1.3 76.1 - - - +
1181F PHE* 1.3 65.9 + - - +
1183F VAL* 2.9 27.0 - - + +
1184F ALA* 3.1 8.5 + - + +
1246F TRP* 4.1 32.8 - + - -
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Residues in contact with PHE1181 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1177F ILE 2.9 19.7 + - - +
1178F GLN 3.8 3.4 - - - +
1180F TYR* 1.3 79.3 - - + +
1182F ARG* 1.3 66.2 + - + +
1184F ALA* 3.2 10.7 + - + +
1185F SER* 2.8 46.8 + - - -
1240F LEU* 5.3 2.5 - - + -
1243F ALA* 2.9 50.3 - - + -
1244F ASN* 3.7 16.8 - - + -
1246F TRP* 4.6 12.8 - + + -
1247F LEU* 3.4 44.2 - - + -
1302F ALA* 5.7 9.4 - - + -
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Residues in contact with ARG1182 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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996F PRO* 5.1 6.3 - - - +
1178F GLN* 2.9 30.9 + - + +
1179F LYS* 3.8 14.4 - - - +
1180F TYR 3.2 0.2 - - - -
1181F PHE* 1.3 84.5 - - + +
1183F VAL* 1.3 57.9 + - - +
1185F SER* 4.1 6.3 - - - +
1186F ARG* 2.9 75.3 + - + +
1247F LEU* 6.2 0.2 - - + -
1301F LEU* 4.4 21.4 - - - +
1302F ALA* 6.3 2.2 - - + +
1305F GLU* 4.1 26.7 + - - +
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Residues in contact with VAL1183 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240F ALA 4.6 8.2 - - - +
241F HIS* 5.1 15.3 - - + +
1179F LYS* 2.9 18.2 + - + +
1180F TYR* 2.9 33.2 - - + +
1182F ARG* 1.3 76.1 - - - +
1184F ALA* 1.3 61.2 + - + +
1186F ARG* 4.6 9.0 - - - +
1187F ASP* 4.2 13.5 + - - +
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Residues in contact with ALA1184 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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237F ILE* 4.9 13.9 - - + +
240F ALA* 4.1 27.4 - - + +
1180F TYR* 3.1 15.4 + - + +
1181F PHE* 3.4 16.8 - - + +
1182F ARG 3.1 0.2 - - - -
1183F VAL* 1.3 81.0 - - + +
1185F SER* 1.3 58.0 + - - +
1186F ARG 3.4 0.5 + - - -
1187F ASP* 3.4 6.7 + - - +
1188F LEU* 3.0 25.3 + - - +
1243F ALA* 5.8 4.7 - - + -
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Residues in contact with SER1185 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1181F PHE* 2.8 45.7 + - - -
1182F ARG* 3.1 6.0 + - - -
1184F ALA* 1.3 71.5 - - - +
1186F ARG* 1.3 60.6 + - - +
1188F LEU* 3.6 8.7 - - - -
1189F GLN* 2.8 32.1 + - - +
1240F LEU* 4.6 14.2 - - - +
1243F ALA* 5.9 2.2 - - - -
1302F ALA* 6.2 0.5 - - - +
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Residues in contact with ARG1186 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
996F PRO* 5.4 7.3 - - - +
1182F ARG* 2.9 63.4 + - + +
1183F VAL* 4.6 7.6 - - - +
1184F ALA 3.3 0.2 - - - -
1185F SER* 1.3 74.5 - - - +
1187F ASP* 1.3 66.3 + - - +
1189F GLN* 3.3 3.8 + - - +
1190F GLN* 3.0 24.8 + - - +
1305F GLU* 5.0 6.8 + - + +
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Residues in contact with ASP1187 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240F ALA* 5.6 3.4 - - + +
244F PRO* 3.4 11.2 - - - +
245F ILE* 2.5 52.8 + - + +
1183F VAL 4.2 9.2 + - - +
1184F ALA* 3.4 9.4 + - - +
1186F ARG* 1.3 78.0 - - - +
1188F LEU* 1.3 63.3 + - - +
1190F GLN* 3.4 8.5 + - - +
1191F LEU* 3.0 24.5 + - - +
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Residues in contact with LEU1188 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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245F ILE* 6.0 0.9 - - - +
1184F ALA 3.0 15.3 + - - +
1185F SER* 3.5 14.1 - - - +
1186F ARG 3.2 0.2 - - - -
1187F ASP* 1.3 77.0 - - - +
1189F GLN* 1.3 59.7 + - - +
1191F LEU* 3.0 17.2 + - + +
1192F ASP* 2.9 29.0 + - + +
1236F ALA 4.1 5.6 - - - +
1239F PHE* 3.5 34.8 - - + +
1240F LEU* 3.4 47.6 - - + +
1243F ALA* 5.4 6.7 - - + -
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Residues in contact with GLN1189 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1185F SER* 2.8 22.8 + - - +
1186F ARG* 4.0 4.5 - - - +
1188F LEU* 1.3 70.8 - - + +
1190F GLN* 1.3 66.1 + - - +
1192F ASP* 3.2 20.4 + - - +
1193F ASP* 2.9 28.5 + - + +
1196F GLN* 5.8 1.0 + - - -
1240F LEU* 4.1 25.5 - - + +
1306F LEU* 3.7 33.4 - - + +
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Residues in contact with GLN1190 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1186F ARG 3.0 17.7 + - - +
1187F ASP* 3.6 9.9 - - - +
1189F GLN* 1.3 76.5 - - - +
1191F LEU* 1.3 63.2 + - - +
1193F ASP* 3.2 18.6 + - - +
1194F THR* 3.0 30.5 + - + +
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Residues in contact with LEU1191 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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245F ILE* 5.0 10.3 - - + +
246F ASP* 4.2 31.9 - - - +
247F LEU* 4.3 12.3 - - + +
1187F ASP* 3.0 16.1 + - - +
1188F LEU* 3.0 17.7 + - + +
1190F GLN* 1.3 77.5 - - - +
1192F ASP* 1.3 56.7 + - - +
1194F THR* 3.2 11.4 - - + +
1195F THR* 2.8 42.8 + - - +
1236F ALA* 3.7 28.5 - - + -
1239F PHE* 4.5 18.2 - - + -
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Residues in contact with ASP1192 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1188F LEU* 2.9 19.2 + - + +
1189F GLN* 3.2 26.9 + - - +
1191F LEU* 1.3 77.6 - - - +
1193F ASP* 1.3 57.3 + - - +
1195F THR 3.3 1.2 + - - -
1196F GLN* 2.9 37.6 + - - +
1233F ASN* 3.5 19.2 - - - +
1236F ALA* 4.3 16.1 - - + +
1237F SER* 4.8 9.2 - - - -
1240F LEU* 4.1 17.5 - - - +
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Residues in contact with ASP1193 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1189F GLN* 2.9 17.1 + - - +
1190F GLN* 3.5 21.0 + - - +
1192F ASP* 1.3 76.1 - - - +
1194F THR* 1.3 57.6 + - - +
1196F GLN* 3.0 10.8 + - - +
1197F LEU* 3.0 47.6 + - - +
1313F ARG* 5.1 8.7 + - - -
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Residues in contact with THR1194 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247F LEU* 6.5 0.7 - - + -
1190F GLN* 3.0 24.8 + - + +
1191F LEU* 3.2 23.3 - - + +
1193F ASP* 1.3 77.6 - - - +
1195F THR* 1.3 60.5 + - - +
1197F LEU* 4.5 11.7 - - - +
1198F PRO* 3.2 21.8 - - - +
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Residues in contact with THR1195 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247F LEU* 5.7 3.6 - - - +
1191F LEU* 2.8 29.7 + - - +
1192F ASP 3.9 2.7 - - - -
1194F THR* 1.3 80.4 - - - +
1196F GLN* 1.3 61.6 + - - +
1197F LEU 3.5 0.2 - - - -
1198F PRO* 3.6 11.0 - - - +
1199F LEU* 4.3 9.9 + - - +
1229F TYR* 4.8 2.3 - - - +
1232F SER* 3.4 47.3 - - - +
1233F ASN* 3.4 9.6 + - - +
1236F ALA* 4.3 7.6 - - + -
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Residues in contact with GLN1196 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
422F ALA 5.3 0.6 + - - -
426F ASN* 4.3 24.2 + - - +
1189F GLN* 5.8 1.0 + - - -
1192F ASP* 2.9 31.8 + - - +
1193F ASP* 3.0 9.3 + - - +
1195F THR* 1.3 77.9 - - - +
1197F LEU* 1.3 65.9 + - + +
1198F PRO 3.4 0.2 - - - -
1199F LEU* 3.2 27.7 + - + +
1200F LEU* 3.8 13.7 + - + +
1233F ASN* 4.4 16.1 - - - +
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Residues in contact with LEU1197 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1122F ASN* 5.2 12.3 - - - +
1193F ASP* 3.0 34.5 + - - +
1194F THR* 4.5 10.3 - - - +
1196F GLN* 1.3 76.8 - - + +
1198F PRO* 1.3 69.0 - - + +
1199F LEU 3.0 0.7 + - - -
1200F LEU* 3.0 17.9 + - + +
1201F SER* 3.0 25.1 + - - +
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Residues in contact with PRO1198 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1194F THR 3.2 22.0 - - - +
1195F THR* 3.6 9.6 - - - +
1196F GLN 3.6 3.1 - - - -
1197F LEU* 1.3 91.4 - - + +
1199F LEU* 1.3 54.9 + - - +
1201F SER* 3.6 11.6 - - - +
1202F HIS* 2.8 31.9 + - - +
1229F TYR* 4.2 26.5 - - + -
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Residues in contact with LEU1199 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392F GLN* 4.3 17.7 - - - +
1195F THR 4.3 7.0 - - - +
1196F GLN* 3.2 17.5 + - + +
1197F LEU 3.0 0.4 + - - -
1198F PRO* 1.3 79.2 - - - +
1200F LEU* 1.3 66.6 + - + +
1202F HIS* 3.3 3.4 + - - +
1203F PHE* 2.9 40.8 + - + -
1226F LEU* 4.0 11.9 - - + -
1229F TYR* 3.6 38.8 - - + -
1230F THR* 3.9 8.3 - - - +
1233F ASN* 3.2 37.2 - - + +
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Residues in contact with LEU1200 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418F CYS* 3.7 21.9 - - - +
421F VAL* 4.8 0.7 - - + -
422F ALA* 3.7 33.4 - - + +
1122F ASN* 5.2 11.9 - - - +
1196F GLN* 4.4 15.0 - - + +
1197F LEU* 3.0 17.8 + - + +
1199F LEU* 1.3 79.0 - - + +
1201F SER* 1.3 63.5 + - - +
1203F PHE* 3.3 11.6 + - + +
1204F ALA* 2.9 24.9 + - - +
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Residues in contact with SER1201 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
780F ASN* 4.0 20.3 + - - +
825F ARG* 5.1 8.3 - - - +
1197F LEU* 3.0 16.6 + - - +
1198F PRO* 3.6 13.7 - - - +
1200F LEU* 1.3 78.9 - - - +
1202F HIS* 1.3 56.5 + - - +
1204F ALA* 3.2 5.6 + - - +
1205F GLU* 2.9 33.3 + - - +
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Residues in contact with HIS1202 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396F TYR* 3.0 34.9 + + - -
1198F PRO 2.8 21.0 + - - +
1199F LEU 3.9 2.5 - - - +
1201F SER* 1.3 73.1 - - - +
1203F PHE* 1.3 53.0 + + - +
1205F GLU* 3.5 10.5 - - + +
1206F THR* 2.5 49.6 + - - -
1222F PHE* 3.6 35.9 + + + -
1225F LYS* 4.6 10.7 - - + -
1226F LEU* 3.9 21.1 - - + -
1229F TYR* 3.6 24.9 + + + -
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Residues in contact with PHE1203 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392F GLN* 4.9 12.8 - - + -
395F ILE* 6.5 1.1 - - + -
396F TYR* 4.1 16.2 - + + -
399F ILE* 6.5 0.9 - - + -
418F CYS* 3.8 18.4 - - + -
421F VAL* 3.4 46.7 - - + -
1199F LEU* 2.9 34.9 + - + +
1200F LEU* 3.6 7.6 - - + +
1202F HIS* 1.3 77.2 - + - +
1204F ALA* 1.3 65.4 + - - +
1206F THR* 3.1 4.1 + - - -
1207F VAL* 3.0 33.6 + - + +
1226F LEU* 3.4 46.4 - - + -
----------------------------------------------------------
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Residues in contact with ALA1204 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414F ALA* 6.5 0.7 - - - -
418F CYS* 4.8 6.8 - - + -
780F ASN* 5.3 4.3 - - - +
1200F LEU 2.9 17.1 + - - +
1201F SER* 3.6 6.1 - - - +
1203F PHE* 1.3 74.5 - - - +
1205F GLU* 1.3 60.1 + - + +
1207F VAL* 3.5 3.2 + - - +
1208F GLU* 2.9 35.5 + - + +
----------------------------------------------------------
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Residues in contact with GLU1205 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
777F TRP* 2.9 38.8 + - + -
778F LEU* 2.9 13.4 - - - +
779F LEU* 3.1 25.7 - - + +
780F ASN* 2.5 40.7 + - + +
824F GLU* 5.3 1.4 - - - +
1201F SER 2.9 19.7 + - - +
1202F HIS* 3.5 16.4 - - + +
1203F PHE 3.2 0.2 - - - -
1204F ALA* 1.3 77.7 - - - +
1206F THR* 1.3 62.6 + - - +
1208F GLU* 4.8 0.7 - - - -
1209F GLY* 2.9 22.3 + - - -
1213F ILE* 5.0 1.1 - - - -
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Residues in contact with THR1206 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396F TYR* 3.3 38.8 + - + +
399F ILE* 3.6 24.5 - - + -
400F MET* 4.9 5.6 - - + +
1202F HIS* 2.5 38.2 + - - -
1203F PHE* 3.1 8.4 + - - -
1205F GLU* 1.3 73.9 - - - +
1207F VAL* 1.3 57.4 + - - +
1209F GLY 3.7 0.2 - - - -
1210F LEU* 3.1 39.0 + - + +
1213F ILE* 4.1 11.9 - - + +
----------------------------------------------------------
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Residues in contact with VAL1207 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399F ILE* 4.1 21.3 - - + -
402F LEU* 5.8 3.1 - - + -
407F LEU* 3.7 26.9 - - + +
414F ALA* 3.6 34.5 - - + +
417F ILE* 4.7 18.6 - - + -
418F CYS* 5.9 3.8 - - + +
1203F PHE* 3.0 19.4 + - + +
1204F ALA* 4.2 3.1 - - - +
1206F THR* 1.3 75.9 - - - +
1208F GLU* 1.3 68.2 + - - +
1209F GLY 3.3 0.5 + - - -
1210F LEU* 3.4 21.5 + - + +
----------------------------------------------------------
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Residues in contact with GLU1208 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414F ALA* 5.2 9.4 - - + +
775F LYS* 3.5 30.3 + - - -
777F TRP* 3.3 33.1 - - + +
1204F ALA* 2.9 20.9 + - + +
1207F VAL* 1.3 78.6 - - - +
1209F GLY* 1.3 57.1 + - - +
1210F LEU 3.5 0.7 + - - -
1211F THR* 5.7 0.2 + - - -
----------------------------------------------------------
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Residues in contact with GLY1209 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
777F TRP* 3.4 31.2 - - - -
1205F GLU 2.9 10.7 + - - -
1206F THR 3.7 3.4 - - - -
1208F GLU* 1.3 77.3 - - - +
1210F LEU* 1.3 59.5 + - - -
1211F THR* 3.4 3.6 - - - -
1212F THR* 2.6 25.0 + - - -
1213F ILE* 3.1 14.4 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il