Contacts of the helix formed by residues 1162 - 1209 (chain G) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL1162 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1160G THR* 2.9 12.5 + - - +
1161G PRO* 1.3 85.4 - - + +
1163G PHE* 1.3 64.6 + - - +
1164G LEU 3.0 1.7 + - - -
1165G VAL* 3.3 20.8 + - + +
1166G ALA* 4.2 1.6 + - - +
1265G THR* 3.7 20.6 - - + +
1269G ASN* 5.0 11.9 - - + +
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Residues in contact with PHE1163 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1153G LEU* 5.0 0.9 - - + -
1156G ILE* 3.4 33.4 - - + +
1157G SER* 4.5 7.2 - - - -
1160G THR* 2.8 28.5 + - + +
1162G VAL* 1.3 79.4 - - - +
1164G LEU* 1.3 65.3 + - - +
1165G VAL 3.2 0.2 - - - -
1166G ALA* 3.0 9.1 + - + +
1167G LEU* 2.9 52.3 + - + -
1258G VAL* 3.8 34.3 - - + -
1261G ILE* 3.5 39.5 - - + -
1262G ALA* 4.0 15.3 - - + -
1265G THR* 5.3 4.0 - - + -
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Residues in contact with LEU1164 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157G SER* 3.4 43.7 - - - +
1161G PRO* 3.1 30.3 - - + +
1162G VAL 3.0 1.6 + - - -
1163G PHE* 1.3 78.1 - - - +
1165G VAL* 1.3 59.5 + - + +
1167G LEU* 3.1 10.4 + - + +
1168G LEU* 3.0 42.0 + - + +
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Residues in contact with VAL1165 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1161G PRO 5.4 1.8 - - - +
1162G VAL* 3.8 13.9 - - + +
1163G PHE 3.2 0.6 - - - -
1164G LEU* 1.3 78.7 - - + +
1166G ALA* 1.3 56.9 + - - +
1168G LEU* 3.8 12.0 + - + +
1169G PRO* 3.1 24.1 - - - +
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Residues in contact with ALA1166 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1162G VAL 4.2 1.2 + - - +
1163G PHE* 3.0 13.0 + - + +
1165G VAL* 1.3 76.1 - - - +
1167G LEU* 1.3 65.6 + - - +
1169G PRO* 3.1 12.1 - - - +
1170G LEU* 3.2 22.1 - - + +
1261G ILE* 3.6 41.1 - - + -
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Residues in contact with LEU1167 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1153G LEU* 3.6 31.4 - - + +
1157G SER* 6.4 1.8 - - - -
1163G PHE* 2.9 37.7 + - + +
1164G LEU* 3.1 12.8 + - - +
1166G ALA* 1.3 77.6 - - - +
1168G LEU* 1.3 76.4 + - + +
1170G LEU* 3.2 11.9 + - + +
1171G ALA* 3.0 33.3 + - + +
1258G VAL* 5.4 6.5 - - + -
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Residues in contact with LEU1168 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1164G LEU* 3.0 26.6 + - + +
1165G VAL* 4.1 9.6 - - + +
1167G LEU* 1.3 87.3 - - + +
1169G PRO* 1.3 68.2 - - + +
1171G ALA* 3.5 5.2 + - + +
1172G ILE* 3.3 24.5 + - - +
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Residues in contact with PRO1169 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1165G VAL 3.1 26.7 - - - +
1166G ALA* 3.1 11.9 - - - +
1168G LEU* 1.3 83.1 - - + +
1170G LEU* 1.3 62.9 + - + +
1172G ILE* 3.1 10.7 + - + +
1173G VAL* 2.9 35.7 + - + +
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Residues in contact with LEU1170 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1166G ALA* 3.2 18.8 - - - +
1167G LEU* 3.2 16.5 + - + +
1169G PRO* 1.3 87.1 - - + +
1171G ALA* 1.3 56.8 + - - +
1173G VAL* 3.3 12.2 + - + +
1174G CYS* 2.9 29.0 + - - +
1254G ILE* 3.8 41.2 - - + +
1257G CYS* 4.8 10.1 - - + -
1258G VAL* 4.7 11.7 - - + -
1261G ILE* 4.7 15.7 - - + -
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Residues in contact with ALA1171 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1167G LEU* 3.0 27.4 + - + +
1168G LEU* 3.8 9.6 - - - +
1169G PRO 3.2 0.2 - - - -
1170G LEU* 1.3 76.7 - - - +
1172G ILE* 1.3 61.0 + - + +
1174G CYS* 3.4 8.0 + - - +
1175G TYR* 2.9 29.6 + - - +
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Residues in contact with ILE1172 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1168G LEU 3.3 15.9 - - - +
1169G PRO* 3.1 12.0 + - + +
1171G ALA* 1.3 77.1 - - + +
1173G VAL* 1.3 66.8 + - + +
1175G TYR* 3.2 8.9 + - + +
1176G PHE* 2.9 57.2 + - + -
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Residues in contact with VAL1173 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1169G PRO* 2.9 23.0 + - + +
1170G LEU* 3.6 15.3 - - + +
1172G ILE* 1.3 78.8 - - + +
1174G CYS* 1.3 63.2 + - - +
1176G PHE* 3.3 5.1 + - - -
1177G ILE* 2.9 43.8 + - + +
1254G ILE* 4.8 12.1 - - + -
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Residues in contact with CYS1174 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1170G LEU 2.9 14.5 + - - +
1171G ALA* 3.4 12.1 - - - +
1173G VAL* 1.3 77.2 - - - +
1175G TYR* 1.3 64.1 + - - +
1177G ILE* 3.5 7.7 - - - +
1178G GLN* 2.9 44.8 + - - +
1251G MET* 3.4 29.4 - - + -
1254G ILE* 4.4 12.5 - - + +
1294G LEU* 5.5 5.8 - - - -
1297G MET* 6.2 2.7 - - - -
1298G VAL* 5.5 1.1 - - - -
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Residues in contact with TYR1175 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1171G ALA 2.9 20.4 + - - +
1172G ILE* 3.2 10.3 + - + +
1174G CYS* 1.3 71.8 - - - +
1176G PHE* 1.3 92.5 + + - +
1178G GLN* 3.1 24.3 - - - +
1179G LYS* 3.0 62.3 + - + +
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Residues in contact with PHE1176 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1172G ILE* 2.9 41.4 + - + +
1173G VAL* 4.0 4.9 - - - +
1175G TYR* 1.3 104.2 - + - +
1177G ILE* 1.3 60.8 + - + +
1179G LYS* 3.3 10.6 + - + +
1180G TYR* 2.9 27.8 + - - +
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Residues in contact with ILE1177 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1173G VAL* 2.9 38.9 + - + +
1174G CYS* 3.5 3.6 - - - +
1176G PHE* 1.3 80.0 - - + +
1178G GLN* 1.3 61.4 + - - +
1180G TYR* 3.3 12.6 - - + +
1181G PHE* 2.9 26.9 + - - +
1246G TRP* 5.8 4.6 - - + -
1247G LEU* 3.7 16.6 - - + +
1250G ARG* 4.9 7.9 - - + -
1251G MET* 3.4 33.4 - - - -
1254G ILE* 4.4 6.5 - - + -
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Residues in contact with GLN1178 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1174G CYS* 2.9 39.2 + - - +
1175G TYR* 3.1 35.0 - - + +
1177G ILE* 1.3 82.6 - - + +
1179G LYS* 1.3 60.9 + - + +
1181G PHE* 3.3 6.7 + - - +
1182G ARG* 2.9 43.9 + - + +
1247G LEU* 4.7 9.4 - - + +
1251G MET* 5.1 2.5 - - + -
1297G MET* 6.0 1.0 - - - +
1298G VAL* 4.3 18.7 - - + +
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Residues in contact with LYS1179 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1175G TYR* 3.0 59.1 + - + +
1176G PHE* 3.7 9.6 - - + +
1178G GLN* 1.3 77.1 - - + +
1180G TYR* 1.3 62.9 + - - +
1182G ARG* 3.3 17.1 + - + +
1183G VAL* 2.9 26.9 + - + +
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Residues in contact with TYR1180 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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234G ASN 5.1 0.6 + - - -
237G ILE* 2.9 31.5 + - + -
238G LYS* 3.1 20.3 + - - -
241G HIS* 3.4 26.9 - - + -
1176G PHE 2.9 14.3 + - - +
1177G ILE* 3.3 15.7 - - + +
1179G LYS* 1.3 75.8 - - - +
1181G PHE* 1.3 66.5 + - - +
1183G VAL* 2.9 26.8 - - + +
1184G ALA* 3.1 8.8 + - + +
1246G TRP* 4.1 32.1 - + - -
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Residues in contact with PHE1181 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1177G ILE 2.9 19.5 + - - +
1178G GLN 3.3 3.6 + - - +
1180G TYR* 1.3 78.9 - - + +
1182G ARG* 1.3 65.4 + - + +
1184G ALA* 3.2 11.1 + - + +
1185G SER* 2.8 47.2 + - - -
1240G LEU* 5.3 2.7 - - + -
1243G ALA* 2.9 51.1 - - + -
1244G ASN* 3.7 16.6 - - + -
1246G TRP* 4.6 14.1 - + + -
1247G LEU* 3.4 42.0 - - + -
1302G ALA* 5.7 8.7 - - + -
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Residues in contact with ARG1182 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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996G PRO* 5.1 6.5 - - - +
1178G GLN* 2.9 31.5 + - + +
1179G LYS* 3.8 15.3 - - - +
1180G TYR 3.2 0.2 - - - -
1181G PHE* 1.3 83.1 - - + +
1183G VAL* 1.3 58.6 + - - +
1185G SER* 4.0 6.7 - - - +
1186G ARG* 2.9 75.1 + - + +
1247G LEU* 6.2 0.7 - - + -
1301G LEU* 4.4 23.2 - - - +
1302G ALA* 6.3 2.0 - - + +
1305G GLU* 4.1 27.1 + - - +
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Residues in contact with VAL1183 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240G ALA 4.6 8.3 - - - +
241G HIS* 5.1 15.0 - - + +
1179G LYS* 2.9 17.1 + - + +
1180G TYR* 2.9 33.9 - - + +
1182G ARG* 1.3 76.3 - - - +
1184G ALA* 1.3 61.0 + - + +
1186G ARG* 4.6 8.8 - - - +
1187G ASP* 4.2 13.7 + - - +
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Residues in contact with ALA1184 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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237G ILE* 4.9 13.9 - - + +
240G ALA* 4.1 28.4 - - + +
1180G TYR* 3.1 14.4 + - + +
1181G PHE* 3.4 17.0 - - + +
1182G ARG 3.1 0.2 - - - -
1183G VAL* 1.3 80.1 - - + +
1185G SER* 1.3 59.3 + - - +
1186G ARG 3.4 0.3 + - - -
1187G ASP* 3.4 7.0 + - - +
1188G LEU* 3.0 24.5 + - - +
1243G ALA* 5.8 4.3 - - + -
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Residues in contact with SER1185 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1181G PHE* 2.8 45.0 + - - -
1182G ARG* 3.1 6.0 + - - -
1184G ALA* 1.3 71.8 - - - +
1186G ARG* 1.3 60.1 + - - +
1188G LEU* 3.5 8.0 - - - +
1189G GLN* 2.8 32.9 + - - +
1240G LEU* 4.6 14.3 - - - +
1243G ALA* 5.9 2.2 - - - -
1302G ALA* 6.2 0.5 - - - +
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Residues in contact with ARG1186 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
996G PRO* 5.4 7.3 - - - +
1182G ARG* 2.9 64.0 + - + +
1183G VAL* 4.6 8.7 - - - +
1185G SER* 1.3 75.8 - - - +
1187G ASP* 1.3 65.5 + - - +
1189G GLN* 3.9 3.3 - - - +
1190G GLN* 3.0 25.0 + - - +
1305G GLU* 5.0 6.6 + - - +
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Residues in contact with ASP1187 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240G ALA* 5.6 3.2 - - + +
244G PRO* 3.4 11.1 - - - +
245G ILE* 2.5 52.8 + - + +
1183G VAL 4.2 8.4 + - - +
1184G ALA* 3.4 8.8 + - - +
1186G ARG* 1.3 78.3 - - - +
1188G LEU* 1.3 62.7 + - - +
1190G GLN* 3.4 9.2 + - - +
1191G LEU* 3.0 24.5 + - - +
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Residues in contact with LEU1188 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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245G ILE* 6.0 1.1 - - - +
1184G ALA 3.0 16.2 + - - +
1185G SER* 3.5 14.1 - - - +
1186G ARG 3.2 0.4 - - - -
1187G ASP* 1.3 76.5 - - - +
1189G GLN* 1.3 60.8 + - - +
1191G LEU* 3.0 17.4 + - + +
1192G ASP* 2.9 29.4 + - + -
1236G ALA 4.1 4.9 - - - +
1239G PHE* 3.5 34.5 - - + +
1240G LEU* 3.4 47.8 - - + +
1243G ALA* 5.4 6.1 - - + -
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Residues in contact with GLN1189 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1185G SER* 2.8 23.1 + - - +
1186G ARG* 4.0 4.0 - - - +
1188G LEU* 1.3 72.9 - - + +
1190G GLN* 1.3 66.7 + - - +
1192G ASP* 3.2 19.3 + - - +
1193G ASP* 2.9 27.2 + - + +
1196G GLN* 5.8 1.0 + - - -
1240G LEU* 4.1 25.1 - - - +
1306G LEU* 3.7 34.2 - - + +
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Residues in contact with GLN1190 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1186G ARG 3.0 17.4 + - - +
1187G ASP* 3.6 10.3 - - - +
1189G GLN* 1.3 76.8 - - - +
1191G LEU* 1.3 62.0 + - - +
1193G ASP* 3.2 17.9 + - - +
1194G THR* 3.0 30.4 + - + +
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Residues in contact with LEU1191 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
245G ILE* 5.0 10.8 - - + +
246G ASP* 4.2 31.0 - - - +
247G LEU* 4.3 12.8 - - + +
250G ILE* 5.4 0.2 - - + -
1187G ASP* 3.0 15.5 + - - +
1188G LEU* 3.0 17.5 + - + +
1190G GLN* 1.3 76.0 - - - +
1192G ASP* 1.3 58.1 + - - +
1194G THR* 3.2 11.4 - - + +
1195G THR* 2.8 42.8 + - - +
1236G ALA* 3.7 28.3 - - + -
1239G PHE* 4.5 19.3 - - + -
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Residues in contact with ASP1192 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1188G LEU* 2.9 18.9 + - + +
1189G GLN* 3.2 26.8 + - - +
1191G LEU* 1.3 76.6 - - - +
1193G ASP* 1.3 56.7 + - - +
1195G THR* 3.3 1.2 + - - -
1196G GLN* 2.9 36.5 + - - +
1233G ASN* 3.5 19.9 - - - +
1236G ALA* 4.3 17.2 - - + +
1237G SER* 4.8 10.0 - - - -
1240G LEU* 4.1 17.5 - - - +
----------------------------------------------------------
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Residues in contact with ASP1193 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1189G GLN* 2.9 16.6 + - - +
1190G GLN* 3.5 21.3 + - - +
1192G ASP* 1.3 77.0 - - - +
1194G THR* 1.3 57.8 + - - +
1196G GLN* 3.1 10.5 + - - +
1197G LEU* 3.0 48.2 + - - +
1313G ARG* 5.1 9.0 + - - -
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Residues in contact with THR1194 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247G LEU* 6.5 0.7 - - + -
1190G GLN* 3.0 25.7 + - + +
1191G LEU* 3.2 22.9 - - + +
1193G ASP* 1.3 77.3 - - - +
1195G THR* 1.3 59.6 + - - +
1197G LEU* 4.5 11.8 - - - +
1198G PRO* 3.2 22.2 - - - +
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Residues in contact with THR1195 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247G LEU* 5.7 3.6 - - - +
1191G LEU* 2.8 29.6 + - - +
1192G ASP 3.9 2.9 - - - -
1194G THR* 1.3 80.5 - - - +
1196G GLN* 1.3 61.5 + - - +
1197G LEU 3.5 0.2 - - - -
1198G PRO* 3.6 10.7 - - - +
1199G LEU* 4.3 9.9 + - - +
1229G TYR* 4.8 1.9 - - - +
1232G SER* 3.4 47.3 - - - +
1233G ASN* 3.4 9.8 + - - +
1236G ALA* 4.3 7.4 - - + -
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Residues in contact with GLN1196 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
422G ALA 5.3 0.4 + - - -
426G ASN* 4.3 24.0 + - - +
1189G GLN* 5.8 1.2 + - - -
1192G ASP* 2.9 31.9 + - - +
1193G ASP* 3.1 8.9 + - - +
1195G THR* 1.3 77.6 - - - +
1197G LEU* 1.3 66.6 + - + +
1199G LEU* 3.2 27.6 + - + +
1200G LEU* 3.8 13.4 + - + +
1233G ASN* 4.4 16.7 - - - +
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Residues in contact with LEU1197 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1122G ASN* 5.2 11.7 - - - +
1193G ASP* 3.0 35.6 + - - +
1194G THR* 4.5 10.3 - - - +
1196G GLN* 1.3 78.0 - - + +
1198G PRO* 1.3 68.5 - - + +
1199G LEU 3.0 0.9 + - - -
1200G LEU* 3.0 18.4 + - + +
1201G SER* 3.0 25.3 + - - +
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Residues in contact with PRO1198 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1194G THR 3.2 22.2 - - - +
1195G THR* 3.6 9.0 - - - +
1196G GLN 3.6 2.9 - - - -
1197G LEU* 1.3 92.1 - - + +
1199G LEU* 1.3 55.8 + - - +
1201G SER* 3.7 11.6 - - - +
1202G HIS* 2.8 32.2 + - - +
1229G TYR* 4.2 26.7 - - + -
----------------------------------------------------------
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Residues in contact with LEU1199 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392G GLN* 4.3 17.5 - - - +
1195G THR 4.3 7.0 - - - +
1196G GLN* 3.3 17.5 - - + +
1197G LEU 3.0 0.6 + - - -
1198G PRO* 1.3 79.0 - - - +
1200G LEU* 1.3 67.1 + - + +
1202G HIS* 3.3 2.8 + - - +
1203G PHE* 2.9 40.6 + - + -
1226G LEU* 4.0 12.3 - - + -
1229G TYR* 3.6 38.6 - - + +
1230G THR* 3.9 8.3 - - - +
1233G ASN* 3.2 37.9 - - + +
----------------------------------------------------------
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Residues in contact with LEU1200 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418G CYS* 3.7 21.3 - - - +
421G VAL* 4.8 0.4 - - + -
422G ALA* 3.7 33.4 - - + -
1122G ASN* 5.2 11.9 - - - +
1196G GLN* 3.8 15.9 + - + +
1197G LEU* 3.0 18.4 + - + +
1199G LEU* 1.3 78.9 - - + +
1201G SER* 1.3 63.0 + - - +
1203G PHE* 3.3 12.3 + - + +
1204G ALA* 2.9 24.9 + - - +
----------------------------------------------------------
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Residues in contact with SER1201 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
780G ASN* 4.0 21.0 + - - +
825G ARG* 5.1 8.7 - - - +
1197G LEU* 3.0 15.7 + - - +
1198G PRO* 3.7 13.0 - - - +
1200G LEU* 1.3 78.5 - - - +
1202G HIS* 1.3 58.1 + - - +
1204G ALA* 3.2 5.0 + - - +
1205G GLU* 2.9 33.4 + - - +
----------------------------------------------------------
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Residues in contact with HIS1202 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396G TYR* 3.0 36.4 + + - -
1198G PRO 2.8 20.6 + - - +
1199G LEU 3.9 2.2 - - - +
1201G SER* 1.3 74.9 - - - +
1203G PHE* 1.3 53.3 + + - +
1205G GLU* 3.5 12.0 - - + +
1206G THR* 2.5 49.2 + - - -
1222G PHE* 3.6 36.2 + + + -
1225G LYS* 4.6 10.3 - - + -
1226G LEU* 3.9 20.6 - - + +
1229G TYR* 3.6 24.2 + + + -
----------------------------------------------------------
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Residues in contact with PHE1203 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392G GLN* 4.9 13.0 - - + -
395G ILE* 6.5 0.9 - - + -
396G TYR* 4.1 17.0 - + + -
399G ILE* 6.5 0.7 - - + -
418G CYS* 3.8 18.2 - - + -
421G VAL* 3.4 47.3 - - + -
1199G LEU* 2.9 35.8 + - + +
1200G LEU* 3.6 6.7 - - + +
1202G HIS* 1.3 76.8 - + - +
1204G ALA* 1.3 66.6 + - - +
1206G THR* 3.1 4.7 + - - -
1207G VAL* 3.0 32.0 + - + +
1226G LEU* 3.4 44.9 - - + -
----------------------------------------------------------
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Residues in contact with ALA1204 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414G ALA* 6.5 0.9 - - - -
418G CYS* 4.8 7.2 - - + -
780G ASN* 5.3 4.5 - - - +
1200G LEU 2.9 16.3 + - - +
1201G SER* 3.6 7.4 - - - +
1203G PHE* 1.3 75.8 - - - +
1205G GLU* 1.3 59.6 + - + +
1207G VAL* 4.0 3.6 - - - +
1208G GLU* 2.9 35.5 + - + +
----------------------------------------------------------
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Residues in contact with GLU1205 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
777G TRP* 2.9 38.0 + - + -
778G LEU* 2.9 14.0 - - - +
779G LEU* 3.1 24.7 - - + +
780G ASN* 2.5 38.7 + - + +
824G GLU* 5.3 1.4 - - - +
1201G SER 2.9 21.2 + - - +
1202G HIS* 3.5 15.0 - - + +
1204G ALA* 1.3 77.3 - - - +
1206G THR* 1.3 63.6 + - - +
1209G GLY* 2.9 21.5 + - - -
1213G ILE* 4.5 1.2 - - - +
----------------------------------------------------------
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Residues in contact with THR1206 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396G TYR* 3.3 40.5 + - + +
399G ILE* 3.6 23.1 - - + -
400G MET* 4.9 5.2 - - + -
1202G HIS* 2.5 39.0 + - - -
1203G PHE* 3.1 7.8 + - - -
1205G GLU* 1.3 72.1 - - - +
1207G VAL* 1.3 58.7 + - - +
1209G GLY 3.7 0.3 - - - -
1210G LEU* 3.1 38.2 + - + +
1213G ILE* 4.1 11.9 - - + +
----------------------------------------------------------
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Residues in contact with VAL1207 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399G ILE* 4.1 21.1 - - + -
402G LEU* 5.8 2.5 - - + -
407G LEU* 3.8 28.4 - - + +
414G ALA* 3.6 35.2 - - + +
417G ILE* 4.7 19.1 - - + -
418G CYS* 5.9 3.6 - - + +
1203G PHE* 3.0 18.4 + - + +
1204G ALA* 4.2 2.5 - - - +
1206G THR* 1.3 75.9 - - - +
1208G GLU* 1.3 66.9 + - - +
1209G GLY 3.3 0.7 + - - -
1210G LEU* 3.4 21.3 + - + +
----------------------------------------------------------
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Residues in contact with GLU1208 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414G ALA* 5.2 9.6 - - + +
775G LYS* 3.5 30.1 + - - -
777G TRP* 3.3 33.7 - - + +
1204G ALA* 2.9 20.0 + - + +
1207G VAL* 1.3 80.0 - - - +
1209G GLY* 1.3 57.7 + - - +
1210G LEU 3.5 0.6 + - - -
1211G THR* 5.7 0.3 + - - -
----------------------------------------------------------
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Residues in contact with GLY1209 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
777G TRP* 3.4 30.1 - - - -
1205G GLU 2.9 10.5 + - - -
1206G THR 3.7 3.4 - - - -
1208G GLU* 1.3 79.0 - - - +
1210G LEU* 1.3 59.2 + - - -
1211G THR* 3.4 3.6 - - - -
1212G THR* 2.6 25.1 + - - -
1213G ILE* 3.1 14.1 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il