Contacts of the helix formed by residues 1162 - 1209 (chain H) in PDB entry 6C3P
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL1162 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160H THR* 2.9 12.0 + - - +
1161H PRO* 1.3 85.7 - - + +
1163H PHE* 1.3 63.6 + - - +
1164H LEU 3.0 1.7 + - - -
1165H VAL* 3.3 20.8 + - + +
1166H ALA* 4.2 1.7 + - - +
1265H THR* 3.7 20.4 - - + +
1269H ASN* 5.0 12.6 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1163 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156H ILE* 3.4 34.8 - - + +
1157H SER* 4.5 7.9 - - - -
1160H THR* 2.8 29.5 + - + +
1162H VAL* 1.3 79.5 - - - +
1164H LEU* 1.3 63.4 + - - +
1166H ALA* 3.0 9.9 + - + +
1167H LEU* 2.9 53.7 + - + -
1258H VAL* 3.8 33.9 - - + -
1261H ILE* 3.5 39.0 - - + -
1262H ALA* 4.0 15.3 - - + -
1265H THR* 5.3 3.6 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1164 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157H SER* 3.4 42.6 - - - +
1161H PRO* 3.1 28.7 - - + +
1162H VAL 3.0 1.2 + - - -
1163H PHE* 1.3 77.7 - - - +
1165H VAL* 1.3 60.6 + - + +
1167H LEU* 3.1 10.5 + - + +
1168H LEU* 3.0 41.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1165 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1161H PRO 5.4 2.2 - - - +
1162H VAL* 3.3 13.4 + - + +
1163H PHE 3.2 0.8 - - - -
1164H LEU* 1.3 80.6 - - + +
1166H ALA* 1.3 57.8 + - - +
1168H LEU* 4.1 11.7 - - + +
1169H PRO* 3.1 24.4 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1166 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1162H VAL 4.2 1.0 + - - +
1163H PHE* 3.0 14.1 + - + +
1165H VAL* 1.3 77.6 - - - +
1167H LEU* 1.3 66.5 + - - +
1169H PRO* 3.1 11.6 - - - +
1170H LEU* 3.2 21.7 - - + +
1261H ILE* 3.6 40.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1167 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1153H LEU* 3.6 31.6 - - + +
1157H SER* 6.4 1.6 - - - -
1163H PHE* 2.9 37.1 + - + +
1164H LEU* 3.1 14.5 + - + +
1166H ALA* 1.3 78.6 - - - +
1168H LEU* 1.3 75.0 + - + +
1170H LEU* 3.2 11.7 + - + +
1171H ALA* 3.0 34.1 + - + +
1258H VAL* 5.4 6.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1168 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1164H LEU* 3.0 28.0 + - + +
1165H VAL* 4.1 9.9 - - + +
1167H LEU* 1.3 87.7 - - + +
1169H PRO* 1.3 69.0 - - + +
1171H ALA* 3.5 5.0 + - + +
1172H ILE* 3.3 24.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PRO1169 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1165H VAL 3.1 27.8 - - - +
1166H ALA* 3.1 11.4 - - - +
1168H LEU* 1.3 82.8 - - + +
1170H LEU* 1.3 64.3 + - + +
1172H ILE* 3.1 10.0 + - + +
1173H VAL* 2.9 36.0 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1170 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1166H ALA* 3.2 17.9 - - - +
1167H LEU* 3.2 16.5 + - + +
1169H PRO* 1.3 86.5 - - + +
1171H ALA* 1.3 55.8 + - - +
1173H VAL* 3.3 12.2 + - + +
1174H CYS* 2.9 29.5 + - - +
1254H ILE* 3.8 40.6 - - + +
1257H CYS* 4.8 10.8 - - + -
1258H VAL* 4.7 11.2 - - + -
1261H ILE* 4.7 16.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1171 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1167H LEU* 3.0 27.0 + - + +
1168H LEU* 3.8 9.9 - - + +
1169H PRO 3.2 0.2 - - - -
1170H LEU* 1.3 76.7 - - - +
1172H ILE* 1.3 61.8 + - + +
1174H CYS* 3.4 8.1 + - - +
1175H TYR* 2.9 29.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1172 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1168H LEU 3.3 15.5 - - - +
1169H PRO* 3.1 11.8 + - + +
1171H ALA* 1.3 76.8 - - + +
1173H VAL* 1.3 66.5 + - + +
1175H TYR* 3.2 8.4 + - + +
1176H PHE* 2.9 55.9 + - + -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1173 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1169H PRO* 2.9 22.8 + - + +
1170H LEU* 3.6 14.8 - - + +
1172H ILE* 1.3 76.5 - - + +
1174H CYS* 1.3 62.9 + - - +
1176H PHE* 3.3 5.5 + - - +
1177H ILE* 2.9 44.3 + - + +
1254H ILE* 4.8 12.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with CYS1174 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1170H LEU 2.9 13.2 + - - +
1171H ALA* 3.4 12.8 - - - +
1173H VAL* 1.3 76.8 - - - +
1175H TYR* 1.3 64.4 + - - +
1177H ILE* 3.5 7.5 - - - +
1178H GLN* 2.9 45.4 + - - +
1251H MET* 3.4 29.6 - - + -
1254H ILE* 4.4 14.3 - - + +
1294H LEU* 5.5 6.5 - - - -
1297H MET* 6.2 2.9 - - - -
1298H VAL* 5.5 0.9 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with TYR1175 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1171H ALA 2.9 19.8 + - - +
1172H ILE* 3.6 10.8 - - + +
1174H CYS* 1.3 73.6 - - - +
1176H PHE* 1.3 90.9 + + - +
1178H GLN* 3.1 24.6 - - - +
1179H LYS* 3.0 61.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1176 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1172H ILE* 2.9 41.8 + - + +
1173H VAL* 4.0 4.5 - - - +
1175H TYR* 1.3 105.0 - + - +
1177H ILE* 1.3 61.0 + - + +
1179H LYS* 3.3 10.4 + - + +
1180H TYR* 2.9 27.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE1177 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1173H VAL* 2.9 39.4 + - + +
1174H CYS* 3.5 3.8 - - - +
1176H PHE* 1.3 80.2 - - + +
1178H GLN* 1.3 61.1 + - - +
1180H TYR* 3.3 12.1 - - + +
1181H PHE* 2.9 27.2 + - - +
1246H TRP* 5.8 5.1 - - + -
1247H LEU* 3.7 15.0 - - + +
1250H ARG* 4.9 8.5 - - + -
1251H MET* 3.4 33.7 - - + -
1254H ILE* 4.4 5.6 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN1178 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1174H CYS* 2.9 40.9 + - - +
1175H TYR* 3.1 35.3 - - + +
1177H ILE* 1.3 82.5 - - + +
1179H LYS* 1.3 62.1 + - + +
1181H PHE* 3.3 6.9 + - - +
1182H ARG* 2.9 43.3 + - + +
1247H LEU* 4.7 10.1 - - + -
1251H MET* 5.1 2.5 - - - -
1297H MET* 6.0 0.7 - - - +
1298H VAL* 4.3 18.9 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS1179 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1175H TYR* 3.0 58.8 + - + +
1176H PHE* 3.7 9.6 - - + +
1178H GLN* 1.3 78.0 - - + +
1180H TYR* 1.3 63.7 + - - +
1182H ARG* 3.3 17.3 + - - +
1183H VAL* 2.9 26.5 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with TYR1180 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
237H ILE* 2.9 31.7 + - + -
238H LYS* 3.1 20.3 + - - -
241H HIS* 3.4 28.0 - - + -
1176H PHE 2.9 14.2 + - - +
1177H ILE* 3.3 15.3 - - + +
1179H LYS* 1.3 76.1 - - - +
1181H PHE* 1.3 66.7 + - - +
1183H VAL* 2.9 26.8 - - + +
1184H ALA* 3.0 9.2 + - + +
1246H TRP* 4.1 33.2 - + - -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1181 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1177H ILE 2.9 19.3 + - - +
1178H GLN 3.3 4.0 + - - +
1180H TYR* 1.3 78.4 - - + +
1182H ARG* 1.3 66.5 - - + +
1184H ALA* 3.2 10.9 + - + +
1185H SER* 2.8 46.8 + - - -
1240H LEU* 5.3 2.5 - - + -
1243H ALA* 2.9 51.6 - - + -
1244H ASN* 3.7 15.7 - - + -
1246H TRP* 4.6 11.9 - + + -
1247H LEU* 3.4 40.6 - - + -
1302H ALA* 5.7 9.0 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1182 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
996H PRO* 5.1 6.5 - - - +
1178H GLN* 2.9 31.3 + - + +
1179H LYS* 3.8 14.9 - - + +
1181H PHE* 1.3 82.4 - - + +
1183H VAL* 1.3 58.3 + - - +
1185H SER* 4.0 6.2 - - - +
1186H ARG* 2.9 76.8 + - + +
1247H LEU* 6.2 0.7 - - + -
1301H LEU* 4.4 21.8 - - - +
1302H ALA* 6.3 2.2 - - + +
1305H GLU* 4.1 27.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1183 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240H ALA 4.6 8.1 - - - +
241H HIS* 5.1 14.4 - - + +
1179H LYS* 2.9 17.2 + - + +
1180H TYR* 2.9 34.3 - - + +
1182H ARG* 1.3 77.1 - - - +
1184H ALA* 1.3 61.2 + - + +
1186H ARG* 4.4 9.2 - - - +
1187H ASP* 4.2 13.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1184 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
237H ILE* 4.9 13.5 - - + +
240H ALA* 4.1 27.9 - - + +
1180H TYR* 3.0 14.7 + - + +
1181H PHE* 3.4 17.0 - - + +
1183H VAL* 1.3 80.8 - - + +
1185H SER* 1.3 58.6 + - - +
1186H ARG 3.4 0.3 + - - -
1187H ASP* 3.4 6.7 + - - +
1188H LEU* 3.0 25.8 + - - +
1243H ALA* 5.8 3.8 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with SER1185 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1181H PHE* 2.8 46.1 + - - -
1182H ARG* 3.1 5.6 + - - -
1184H ALA* 1.3 72.1 - - - +
1186H ARG* 1.3 61.6 + - - +
1188H LEU* 3.6 8.1 - - - -
1189H GLN* 2.8 32.7 + - - +
1240H LEU* 4.6 14.2 - - - +
1243H ALA* 5.9 2.5 - - - -
1302H ALA* 6.2 0.5 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG1186 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
996H PRO* 5.4 7.3 - - - +
1182H ARG* 2.9 65.9 + - + +
1183H VAL* 4.6 7.9 - - - +
1184H ALA 3.3 0.2 - - - -
1185H SER* 1.3 73.6 - - - +
1187H ASP* 1.3 65.5 + - - +
1189H GLN* 3.9 3.7 - - - +
1190H GLN* 3.0 24.9 + - - +
1305H GLU* 5.0 6.6 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP1187 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240H ALA* 5.6 3.6 - - + +
244H PRO* 3.4 11.2 - - - +
245H ILE* 2.5 53.4 + - + +
1183H VAL 4.2 8.8 + - - +
1184H ALA* 3.4 9.0 + - - +
1185H SER 3.4 0.4 - - - -
1186H ARG* 1.3 77.1 - - - +
1188H LEU* 1.3 64.3 + - - +
1190H GLN* 3.4 8.4 + - - +
1191H LEU* 3.0 24.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1188 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
245H ILE* 6.0 1.3 - - - +
1184H ALA 3.0 15.8 + - - +
1185H SER* 3.5 13.9 - - - +
1186H ARG 3.2 0.2 - - - -
1187H ASP* 1.3 76.6 - - - +
1189H GLN* 1.3 60.4 + - - +
1191H LEU* 3.0 17.1 + - + +
1192H ASP* 2.9 28.9 + - + -
1236H ALA 4.1 4.9 - - - +
1239H PHE* 3.5 34.3 - - + +
1240H LEU* 3.4 48.5 - - + +
1243H ALA* 5.4 6.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN1189 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1185H SER* 2.8 23.2 + - - +
1186H ARG* 4.0 3.8 - - - +
1188H LEU* 1.3 71.3 - - + +
1190H GLN* 1.3 66.7 + - - +
1192H ASP* 3.2 19.1 + - - +
1193H ASP* 2.9 27.3 + - + +
1196H GLN* 5.8 1.0 + - - -
1240H LEU* 4.1 24.8 - - - +
1306H LEU* 3.7 35.0 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLN1190 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1186H ARG 3.0 17.0 + - - +
1187H ASP* 3.6 10.1 - - - +
1189H GLN* 1.3 76.3 - - - +
1191H LEU* 1.3 62.3 + - - +
1193H ASP* 3.2 17.7 + - - +
1194H THR* 3.0 29.6 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1191 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
245H ILE* 5.0 10.8 - - + +
246H ASP* 4.2 31.4 - - - +
247H LEU* 4.3 12.1 - - + +
249H ALA 5.9 0.2 - - - +
250H ILE* 5.4 0.2 - - + -
1187H ASP* 3.0 15.0 + - - +
1188H LEU* 3.0 17.3 + - + +
1190H GLN* 1.3 76.9 - - - +
1192H ASP* 1.3 57.0 + - - +
1194H THR* 3.2 11.2 - - + +
1195H THR* 2.8 43.2 + - - +
1236H ALA* 3.7 28.3 - - + -
1239H PHE* 4.5 19.5 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ASP1192 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1188H LEU* 2.9 17.7 + - + +
1189H GLN* 3.2 27.3 + - - +
1191H LEU* 1.3 78.0 - - - +
1193H ASP* 1.3 62.0 + - - +
1195H THR* 3.3 1.0 + - - -
1196H GLN* 2.9 32.3 + - - +
1233H ASN* 3.5 20.0 - - - +
1236H ALA* 4.3 17.0 - - + +
1237H SER* 4.8 9.9 - - - -
1240H LEU* 4.1 18.1 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP1193 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1189H GLN* 2.9 17.9 + - - +
1190H GLN* 3.5 21.6 - - - +
1192H ASP* 1.3 76.8 - - - +
1194H THR* 1.3 58.7 + - - +
1196H GLN* 3.1 11.0 + - - +
1197H LEU* 3.0 47.1 + - - +
1313H ARG* 5.1 8.8 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with THR1194 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247H LEU* 6.5 0.7 - - + -
1190H GLN* 3.0 24.8 + - + +
1191H LEU* 3.2 23.3 - - + +
1193H ASP* 1.3 75.9 - - - +
1195H THR* 1.3 61.2 + - - +
1197H LEU* 4.5 12.4 - - - +
1198H PRO* 3.2 21.6 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR1195 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247H LEU* 5.7 3.8 - - - +
1191H LEU* 2.8 30.7 + - - +
1192H ASP 3.7 3.4 - - - -
1194H THR* 1.3 81.0 - - - +
1196H GLN* 1.3 62.4 + - - +
1197H LEU 3.5 0.2 - - - -
1198H PRO* 3.6 10.0 - - - +
1199H LEU* 4.3 9.9 + - - +
1229H TYR* 4.8 2.1 - - - +
1232H SER* 3.4 47.1 - - - +
1233H ASN* 3.4 8.9 + - - +
1236H ALA* 4.3 7.0 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN1196 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
422H ALA 5.3 0.8 + - - -
426H ASN* 4.3 23.0 + - - +
1189H GLN* 5.8 1.0 + - - -
1192H ASP* 2.9 30.9 + - - +
1193H ASP* 3.1 9.3 + - - +
1195H THR* 1.3 78.7 - - - +
1197H LEU* 1.3 65.9 + - + +
1199H LEU* 3.2 27.0 + - + +
1200H LEU* 3.8 13.3 + - + +
1233H ASN* 4.4 16.5 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1197 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1122H ASN* 5.2 12.1 - - - +
1193H ASP* 3.0 34.8 + - - +
1194H THR* 4.5 10.3 - - - +
1196H GLN* 1.3 76.2 - - + +
1198H PRO* 1.3 68.8 - - + +
1199H LEU 3.0 1.0 + - - -
1200H LEU* 3.0 18.4 + - + +
1201H SER* 3.0 24.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PRO1198 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1194H THR 3.2 21.8 - - - +
1195H THR* 3.6 8.7 - - - +
1196H GLN 3.6 3.1 - - - -
1197H LEU* 1.3 92.1 - - + +
1199H LEU* 1.3 56.2 + - - +
1201H SER* 3.6 10.7 - - - +
1202H HIS* 2.8 32.2 + - - +
1229H TYR* 4.2 26.1 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1199 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392H GLN* 4.3 18.2 - - - +
1195H THR 4.3 7.2 - - - +
1196H GLN* 3.2 17.9 + - + +
1197H LEU 3.0 1.0 + - - -
1198H PRO* 1.3 78.4 - - - +
1200H LEU* 1.3 66.1 + - + +
1202H HIS* 3.3 3.0 + - - +
1203H PHE* 2.9 41.0 + - + -
1226H LEU* 4.0 11.7 - - + -
1229H TYR* 3.6 37.7 - - + +
1230H THR* 3.9 8.5 - - - +
1233H ASN* 3.2 37.5 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU1200 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418H CYS* 3.7 21.8 - - - +
421H VAL* 4.8 0.7 - - + -
422H ALA* 3.7 34.3 - - + -
1122H ASN* 5.2 12.1 - - - +
1196H GLN* 4.4 15.3 - - + +
1197H LEU* 3.0 18.0 + - + +
1199H LEU* 1.3 78.3 - - + +
1201H SER* 1.3 63.8 + - - +
1203H PHE* 3.3 11.5 + - + +
1204H ALA* 2.9 24.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER1201 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
780H ASN* 4.0 20.5 + - - +
825H ARG* 5.1 8.1 - - - +
1197H LEU* 3.0 16.7 + - - +
1198H PRO* 3.6 13.7 - - - +
1199H LEU 3.2 0.2 - - - -
1200H LEU* 1.3 77.1 - - - +
1202H HIS* 1.3 57.7 + - - +
1204H ALA* 3.2 6.0 + - - +
1205H GLU* 2.9 33.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with HIS1202 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396H TYR* 3.0 35.9 + + - -
1198H PRO 2.8 21.4 + - - +
1199H LEU 3.9 2.2 - - - +
1201H SER* 1.3 73.6 - - - +
1203H PHE* 1.3 55.1 + + - +
1205H GLU* 3.4 11.5 + - + +
1206H THR* 2.5 49.3 + - - -
1222H PHE* 3.6 36.0 + + + -
1225H LYS* 4.6 10.7 - - + +
1226H LEU* 3.9 20.0 - - + -
1229H TYR* 3.6 24.2 + + + -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE1203 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392H GLN* 4.9 12.6 - - + -
395H ILE* 6.5 0.7 - - + -
396H TYR* 4.1 16.6 - + + -
399H ILE* 6.5 0.9 - - + -
418H CYS* 3.8 18.8 - - + -
421H VAL* 3.4 47.1 - - + -
1199H LEU* 2.9 34.7 + - + +
1200H LEU* 3.6 7.6 - - + +
1201H SER 3.2 0.2 - - - -
1202H HIS* 1.3 76.6 - + - +
1204H ALA* 1.3 64.7 + - - +
1206H THR* 3.1 3.9 + - - -
1207H VAL* 3.0 31.9 + - + +
1226H LEU* 3.4 44.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA1204 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414H ALA* 6.5 0.7 - - - -
418H CYS* 4.8 6.8 - - - -
780H ASN* 5.3 4.3 - - - +
1200H LEU 2.9 17.4 + - - +
1201H SER* 3.6 6.3 - - - +
1203H PHE* 1.3 75.7 - - - +
1205H GLU* 1.3 60.0 + - + +
1207H VAL* 4.0 3.0 - - - +
1208H GLU* 2.9 36.1 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU1205 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
777H TRP* 2.9 39.3 + - + -
778H LEU* 2.9 13.7 - - - +
779H LEU* 3.1 24.6 - - + +
780H ASN* 2.5 38.2 + - + +
824H GLU* 5.3 1.6 - - - +
1201H SER 2.9 20.3 + - - +
1202H HIS* 3.5 16.4 - - + +
1203H PHE 3.2 0.2 - - - -
1204H ALA* 1.3 77.5 - - - +
1206H THR* 1.3 62.9 + - - +
1208H GLU* 4.8 0.2 - - - -
1209H GLY 2.9 21.8 + - - -
1213H ILE* 5.0 0.9 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with THR1206 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396H TYR* 3.3 39.9 + - + +
399H ILE* 3.6 23.8 - - + -
400H MET* 4.9 6.1 - - + -
1202H HIS* 2.5 37.9 + - - -
1203H PHE* 3.4 7.6 - - - -
1205H GLU* 1.3 72.7 - - - +
1207H VAL* 1.3 59.9 + - - +
1209H GLY 3.7 0.5 - - - -
1210H LEU* 3.1 38.6 + - + +
1213H ILE* 4.1 11.5 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL1207 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399H ILE* 4.1 20.9 - - + -
402H LEU* 5.8 2.9 - - + -
407H LEU* 3.8 28.2 - - + +
414H ALA* 3.6 34.3 - - + +
417H ILE* 4.7 20.0 - - + -
418H CYS* 5.9 3.6 - - + +
1203H PHE* 3.0 18.3 + - + +
1204H ALA* 4.2 2.9 - - - +
1206H THR* 1.3 76.2 - - - +
1208H GLU* 1.3 68.2 + - - +
1209H GLY 3.3 0.5 + - - -
1210H LEU* 3.4 21.4 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU1208 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407H LEU* 6.3 0.2 - - - -
414H ALA* 5.2 9.0 - - + +
775H LYS* 3.5 30.0 + - - -
777H TRP* 3.3 32.9 - - + +
1204H ALA* 2.9 20.0 + - + +
1207H VAL* 1.3 78.7 - - - +
1209H GLY* 1.3 56.5 + - - +
1210H LEU 3.9 0.5 + - - -
1211H THR* 5.7 0.3 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLY1209 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
777H TRP* 3.4 31.3 - - - -
1205H GLU 2.9 10.9 + - - -
1206H THR 3.7 3.4 - - - -
1208H GLU* 1.3 77.2 - - - +
1210H LEU* 1.3 60.0 + - - -
1211H THR* 3.4 3.6 - - - -
1212H THR* 2.6 25.4 + - - -
1213H ILE* 3.1 14.3 - - - +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il